RNA–Protein interactions for RNA: ENST00000316707.10

PTPN13-201, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 7,546 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-201ENST00000316707 TNRC6BQ9UPQ9 1833 aaKnown RBP3.73□□□□□ -1.81
PTPN13-201ENST00000316707 SCGB1C2P0DMR2 95 aa3.73□□□□□ -1.81
PTPN13-201ENST00000316707 SPANXN1Q5VSR9 72 aa3.73□□□□□ -1.81
PTPN13-201ENST00000316707 IGFL3Q6UXB1 125 aa3.73□□□□□ -1.81
PTPN13-201ENST00000316707 TEX29Q8N6K0 151 aa3.73□□□□□ -1.81
PTPN13-201ENST00000316707 CADP27708 2225 aa3.73□□□□□ -1.81
PTPN13-201ENST00000316707 M0QXV9 152 aa3.73□□□□□ -1.81
PTPN13-201ENST00000316707 FDCSPQ8NFU4 85 aa3.73□□□□□ -1.81
PTPN13-201ENST00000316707 CHD9Q3L8U1 2897 aa3.73□□□□□ -1.81
PTPN13-201ENST00000316707 SMKR1H3BMG3 65 aa3.73□□□□□ -1.81
PTPN13-201ENST00000316707 Q1RN00 199 aa3.73□□□□□ -1.81
PTPN13-201ENST00000316707 GFRALQ6UXV0 394 aa3.73□□□□□ -1.81
PTPN13-201ENST00000316707 C8orf49Q96NF6 230 aa3.73□□□□□ -1.81
PTPN13-201ENST00000316707 SELENOKQ9Y6D0 94 aa3.73□□□□□ -1.81
PTPN13-201ENST00000316707 WNK2Q9Y3S1 2297 aa3.73□□□□□ -1.81
PTPN13-201ENST00000316707 NDUFA3O95167 84 aa3.73□□□□□ -1.81
PTPN13-201ENST00000316707 UBE2D1P51668 147 aa3.73□□□□□ -1.81
PTPN13-201ENST00000316707 IGLV11-55A0A075B6I3 123 aa3.72□□□□□ -1.81
PTPN13-201ENST00000316707 RPL32P62910 135 aaKnown RBP3.72□□□□□ -1.81
PTPN13-201ENST00000316707 GAGE5Q13069 117 aa3.72□□□□□ -1.81
PTPN13-201ENST00000316707 GAGE6Q13070 117 aa3.72□□□□□ -1.81
PTPN13-201ENST00000316707 ZFAND6Q6FIF0 208 aa3.72□□□□□ -1.81
PTPN13-201ENST00000316707 C17orf77Q96MU5 243 aa3.72□□□□□ -1.81
PTPN13-201ENST00000316707 FAM215AQ9Y5M1 114 aa3.72□□□□□ -1.81
PTPN13-201ENST00000316707 HTTP42858 3142 aa3.72□□□□□ -1.81
PTPN13-201ENST00000316707 SPTA1P02549 2419 aa3.72□□□□□ -1.81
PTPN13-201ENST00000316707 LOC107984156A0A0G2JMH3 177 aa3.72□□□□□ -1.81
PTPN13-201ENST00000316707 B9A039 149 aa3.72□□□□□ -1.81
PTPN13-201ENST00000316707 FXYD7P58549 80 aa3.72□□□□□ -1.81
PTPN13-201ENST00000316707 ARL17AQ8IVW1 177 aa3.72□□□□□ -1.81
PTPN13-201ENST00000316707 PLCE1Q9P212 2302 aa3.72□□□□□ -1.81
PTPN13-201ENST00000316707 A0A1W2PNU3 283 aaPredicted RBP3.72□□□□□ -1.81
PTPN13-201ENST00000316707 FCN3O75636 299 aa3.72□□□□□ -1.81
PTPN13-201ENST00000316707 TSPAN13O95857 204 aa3.72□□□□□ -1.81
PTPN13-201ENST00000316707 SUMO2P61956 95 aaKnown RBP3.72□□□□□ -1.81
PTPN13-201ENST00000316707 SEM1Q6ZVN7 128 aa3.72□□□□□ -1.81
PTPN13-201ENST00000316707 WFDC3Q8IUB2 231 aa3.72□□□□□ -1.81
PTPN13-201ENST00000316707 NPBQ8NG41 125 aa3.72□□□□□ -1.81
PTPN13-201ENST00000316707 DOCK7Q96N67 2140 aa3.72□□□□□ -1.81
PTPN13-201ENST00000316707 CTSZQ9UBR2 303 aa3.72□□□□□ -1.81
PTPN13-201ENST00000316707 GOSR1O95249 250 aa3.72□□□□□ -1.81
PTPN13-201ENST00000316707 ATP1A1-AS1Q5TC04 95 aa3.72□□□□□ -1.81
PTPN13-201ENST00000316707 ANAPC13Q9BS18 74 aa3.72□□□□□ -1.81
PTPN13-201ENST00000316707 CEP250Q9BV73 2442 aa3.72□□□□□ -1.81
PTPN13-201ENST00000316707 IGLV2-18A0A075B6J9 118 aa3.72□□□□□ -1.81
PTPN13-201ENST00000316707 IGKV2-40A0A087WW87 121 aaPredicted RBP3.72□□□□□ -1.81
PTPN13-201ENST00000316707 IGKV2D-40P01614 121 aaPredicted RBP3.72□□□□□ -1.81
PTPN13-201ENST00000316707 C2orf66Q6UXQ4 117 aa3.72□□□□□ -1.81
PTPN13-201ENST00000316707 Q6ZUT4 128 aa3.72□□□□□ -1.81
PTPN13-201ENST00000316707 ARRDC1-AS1Q9H2J1 176 aa3.72□□□□□ -1.81
PTPN13-201ENST00000316707 MSRB1Q9NZV6 116 aa3.72□□□□□ -1.81
PTPN13-201ENST00000316707 PRRG2O14669 202 aa3.72□□□□□ -1.81
PTPN13-201ENST00000316707 FAM27E3Q08E93 113 aa3.72□□□□□ -1.81
PTPN13-201ENST00000316707 GTF3C1Q12789 2109 aa3.72□□□□□ -1.81
PTPN13-201ENST00000316707 GAGE2BQ13066 116 aa3.72□□□□□ -1.81
PTPN13-201ENST00000316707 GAGE2EQ4V326 116 aa3.72□□□□□ -1.81
PTPN13-201ENST00000316707 UBTD1Q9HAC8 227 aa3.72□□□□□ -1.81
PTPN13-201ENST00000316707 GAGE2DQ9UEU5 116 aa3.72□□□□□ -1.81
PTPN13-201ENST00000316707 COX7A1P24310 79 aa3.71□□□□□ -1.81
PTPN13-201ENST00000316707 UBE2D3P61077 147 aa3.71□□□□□ -1.81
PTPN13-201ENST00000316707 UBE2D2P62837 147 aa3.71□□□□□ -1.81
PTPN13-201ENST00000316707 LPAL2Q16609 132 aa3.71□□□□□ -1.81
PTPN13-201ENST00000316707 ZNF672Q499Z4 452 aaPredicted RBP3.71□□□□□ -1.81
PTPN13-201ENST00000316707 C10orf126Q8N4M7 172 aa3.71□□□□□ -1.81
PTPN13-201ENST00000316707 FAM57AQ8TBR7 257 aa3.71□□□□□ -1.81
PTPN13-201ENST00000316707 TIMD4Q96H15 378 aa3.71□□□□□ -1.81
PTPN13-201ENST00000316707 ROS1P08922 2347 aa3.71□□□□□ -1.81
PTPN13-201ENST00000316707 MED14OSP0DP75 135 aa3.71□□□□□ -1.82
PTPN13-201ENST00000316707 MRAPQ8TCY5 172 aa3.71□□□□□ -1.82
PTPN13-201ENST00000316707 PRADC1Q9BSG0 188 aa3.71□□□□□ -1.82
PTPN13-201ENST00000316707 COLQQ9Y215 455 aaPredicted RBP3.71□□□□□ -1.82
PTPN13-201ENST00000316707 UFC1Q9Y3C8 167 aa3.71□□□□□ -1.82
PTPN13-201ENST00000316707 INTS1Q8N201 2190 aaKnown RBP3.71□□□□□ -1.82
PTPN13-201ENST00000316707 TRBV7-9A0A0J9YWB2 115 aa3.71□□□□□ -1.82
PTPN13-201ENST00000316707 TIMM23O14925 209 aa3.71□□□□□ -1.82
PTPN13-201ENST00000316707 CD7P09564 240 aa3.71□□□□□ -1.82
PTPN13-201ENST00000316707 MORN3Q6PF18 240 aaPredicted RBP3.71□□□□□ -1.82
PTPN13-201ENST00000316707 CLUHP3Q96NS8 147 aa3.71□□□□□ -1.82
PTPN13-201ENST00000316707 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.71□□□□□ -1.82
PTPN13-201ENST00000316707 LGALS1P09382 135 aaKnown RBP3.71□□□□□ -1.82
PTPN13-201ENST00000316707 C9orf139Q6ZV77 190 aa3.71□□□□□ -1.82
PTPN13-201ENST00000316707 Q8TAT8 98 aa3.71□□□□□ -1.82
PTPN13-201ENST00000316707 DPH3P1Q9H4G8 78 aa3.71□□□□□ -1.82
PTPN13-201ENST00000316707 DIDO1Q9BTC0 2240 aaKnown RBP3.71□□□□□ -1.82
PTPN13-201ENST00000316707 APELAP0DMC3 54 aa3.71□□□□□ -1.82
PTPN13-201ENST00000316707 ZNF80P51504 273 aaPredicted RBP3.71□□□□□ -1.82
PTPN13-201ENST00000316707 MAPKAPK5-AS1Q8N8E1 139 aa3.71□□□□□ -1.82
PTPN13-201ENST00000316707 NEXN-AS1Q8NBZ9 246 aa3.71□□□□□ -1.82
PTPN13-201ENST00000316707 PSMG3-AS1Q96PY0 264 aa3.71□□□□□ -1.82
PTPN13-201ENST00000316707 AGPAT4-IT1Q9H0P7 198 aa3.71□□□□□ -1.82
PTPN13-201ENST00000316707 ERG28Q9UKR5 140 aa3.71□□□□□ -1.82
PTPN13-201ENST00000316707 DOCK10Q96BY6 2186 aa3.71□□□□□ -1.82
PTPN13-201ENST00000316707 GAGE12JA6NER3 117 aa3.71□□□□□ -1.82
PTPN13-201ENST00000316707 GAGE7O76087 117 aa3.71□□□□□ -1.82
PTPN13-201ENST00000316707 CTSGP08311 255 aa3.71□□□□□ -1.82
PTPN13-201ENST00000316707 GAGE12FP0CL80 117 aa3.71□□□□□ -1.82
PTPN13-201ENST00000316707 GAGE12GP0CL81 117 aa3.71□□□□□ -1.82
PTPN13-201ENST00000316707 GAGE12IP0CL82 117 aa3.71□□□□□ -1.82
PTPN13-201ENST00000316707 HLA-DMBP28068 263 aa3.71□□□□□ -1.82
PTPN13-201ENST00000316707 ATP5G2Q06055 141 aa3.71□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms