RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 IGHV4-28A0A0C4DH34 117 aa15□□□□□ -0.01
CLN3-240ENST00000631023 SMIM9A6NGZ8 99 aa15□□□□□ -0.01
CLN3-240ENST00000631023 SMLR1H3BR10 107 aa15□□□□□ -0.01
CLN3-240ENST00000631023 BOLA2-SMG1P6H3BVE0 249 aa15□□□□□ -0.01
CLN3-240ENST00000631023 MBP02144 154 aa15□□□□□ -0.01
CLN3-240ENST00000631023 SPINK13Q1W4C9 94 aa15□□□□□ -0.01
CLN3-240ENST00000631023 IGF2BP2-AS1Q96M15 143 aa15□□□□□ -0.01
CLN3-240ENST00000631023 NEU1Q99519 415 aa15□□□□□ -0.01
CLN3-240ENST00000631023 IGHV3OR16-12A0A075B7B8 117 aa14.99□□□□□ -0.01
CLN3-240ENST00000631023 DEFB4AO15263 64 aa14.99□□□□□ -0.01
CLN3-240ENST00000631023 JTBO76095 146 aa14.99□□□□□ -0.01
CLN3-240ENST00000631023 RAB2AP61019 212 aa14.99□□□□□ -0.01
CLN3-240ENST00000631023 RPL7L1Q6DKI1 246 aaKnown RBP14.99□□□□□ -0.01
CLN3-240ENST00000631023 M0R2Z0 102 aa14.98□□□□□ -0.01
CLN3-240ENST00000631023 UBE2L3P68036 154 aaKnown RBP14.98□□□□□ -0.01
CLN3-240ENST00000631023 FAM122CQ6P4D5 195 aa14.98□□□□□ -0.01
CLN3-240ENST00000631023 PQLC2Q6ZP29 291 aa14.98□□□□□ -0.01
CLN3-240ENST00000631023 C11orf45Q8TAV5 145 aa14.98□□□□□ -0.01
CLN3-240ENST00000631023 CXorf65A6NEN9 183 aa14.98□□□□□ -0.01
CLN3-240ENST00000631023 PRAC2D3DTV9 90 aa14.98□□□□□ -0.01
CLN3-240ENST00000631023 INSP01308 110 aa14.98□□□□□ -0.01
CLN3-240ENST00000631023 PRB4P10163 310 aaPredicted RBP14.98□□□□□ -0.01
CLN3-240ENST00000631023 ICAM4Q14773 271 aa14.98□□□□□ -0.01
CLN3-240ENST00000631023 EXOC3-AS1Q8N2X6 119 aa14.98□□□□□ -0.01
CLN3-240ENST00000631023 TMEM208Q9BTX3 173 aa14.98□□□□□ -0.01
CLN3-240ENST00000631023 TENM2Q9NT68 2774 aa14.97□□□□□ -0.01
CLN3-240ENST00000631023 M0R3E3 92 aa14.97□□□□□ -0.01
CLN3-240ENST00000631023 RBMY1A1P0DJD3 496 aaKnown RBP14.97□□□□□ -0.01
CLN3-240ENST00000631023 RBMY1CP0DJD4 496 aa14.97□□□□□ -0.01
CLN3-240ENST00000631023 TSPOP30536 169 aa14.97□□□□□ -0.01
CLN3-240ENST00000631023 RBMY1FQ15415 496 aaKnown RBP14.97□□□□□ -0.01
CLN3-240ENST00000631023 LYPD1Q8N2G4 141 aa14.97□□□□□ -0.01
CLN3-240ENST00000631023 ZNF503Q96F45 646 aa14.97□□□□□ -0.01
CLN3-240ENST00000631023 SH3BGRL3Q9H299 93 aa14.97□□□□□ -0.01
CLN3-240ENST00000631023 HMSDA8MTL9 139 aa14.96□□□□□ -0.01
CLN3-240ENST00000631023 CDKN1BP46527 198 aa14.96□□□□□ -0.01
CLN3-240ENST00000631023 CDC34P49427 236 aaPredicted RBP14.96□□□□□ -0.01
CLN3-240ENST00000631023 ZNF345Q14585 488 aa14.96□□□□□ -0.01
CLN3-240ENST00000631023 C1orf158Q8N1D5 194 aa14.96□□□□□ -0.01
CLN3-240ENST00000631023 CSMD3Q7Z407 3707 aa14.96□□□□□ -0.02
CLN3-240ENST00000631023 RANP62826 216 aaKnown RBP14.95□□□□□ -0.02
CLN3-240ENST00000631023 PMS2P11Q13670 270 aa14.95□□□□□ -0.02
CLN3-240ENST00000631023 Q6ZNX1 250 aa14.95□□□□□ -0.02
CLN3-240ENST00000631023 RPP25LQ8N5L8 163 aaKnown RBP14.95□□□□□ -0.02
CLN3-240ENST00000631023 TMEM189A5PLL7 270 aa14.94□□□□□ -0.02
CLN3-240ENST00000631023 CRXO43186 299 aaPredicted RBP14.94□□□□□ -0.02
CLN3-240ENST00000631023 HBE1P02100 147 aa14.94□□□□□ -0.02
CLN3-240ENST00000631023 BAP18Q8IXM2 172 aa14.94□□□□□ -0.02
CLN3-240ENST00000631023 PHYHIPLQ96FC7 376 aa14.94□□□□□ -0.02
CLN3-240ENST00000631023 ODF3Q96PU9 254 aa14.94□□□□□ -0.02
CLN3-240ENST00000631023 TRAV12-2A0A075B6T6 113 aa14.94□□□□□ -0.02
CLN3-240ENST00000631023 A0A0D9SG52 128 aa14.94□□□□□ -0.02
CLN3-240ENST00000631023 NPIPB6E9PJ23 425 aa14.94□□□□□ -0.02
CLN3-240ENST00000631023 CSN1S1P47710 185 aa14.94□□□□□ -0.02
CLN3-240ENST00000631023 KCNRGQ8N5I3 272 aa14.94□□□□□ -0.02
CLN3-240ENST00000631023 LINC00477Q96M19 166 aa14.94□□□□□ -0.02
CLN3-240ENST00000631023 ARPC5LQ9BPX5 153 aa14.94□□□□□ -0.02
CLN3-240ENST00000631023 ACTR3CQ9C0K3 210 aaPredicted RBP14.94□□□□□ -0.02
CLN3-240ENST00000631023 NUPR2A6NF83 97 aa14.93□□□□□ -0.02
CLN3-240ENST00000631023 HMGB3O15347 200 aaKnown RBP14.93□□□□□ -0.02
CLN3-240ENST00000631023 EIF3GO75821 320 aaKnown RBP eCLIP14.93□□□□□ -0.02
CLN3-240ENST00000631023 RRN3P1Q2M238 152 aa14.93□□□□□ -0.02
CLN3-240ENST00000631023 TMEM256Q8N2U0 113 aa14.93□□□□□ -0.02
CLN3-240ENST00000631023 OR11H4Q8NGC9 324 aa14.93□□□□□ -0.02
CLN3-240ENST00000631023 RAB24Q969Q5 203 aa14.93□□□□□ -0.02
CLN3-240ENST00000631023 Q9H3A6 140 aa14.93□□□□□ -0.02
CLN3-240ENST00000631023 CT45A10P0DMU9 189 aa14.92□□□□□ -0.02
CLN3-240ENST00000631023 LEPP41159 167 aa14.92□□□□□ -0.02
CLN3-240ENST00000631023 NANOS2P60321 138 aaKnown RBP14.92□□□□□ -0.02
CLN3-240ENST00000631023 FAM74A1Q5RGS3 127 aa14.92□□□□□ -0.02
CLN3-240ENST00000631023 CYTL1Q9NRR1 136 aa14.92□□□□□ -0.02
CLN3-240ENST00000631023 STAG3L2P0CL84 134 aa14.91□□□□□ -0.02
CLN3-240ENST00000631023 STAG3L3P0CL85 134 aa14.91□□□□□ -0.02
CLN3-240ENST00000631023 ARL14EPLP0DKL9 152 aa14.91□□□□□ -0.02
CLN3-240ENST00000631023 RXFP4Q8TDU9 374 aa14.91□□□□□ -0.02
CLN3-240ENST00000631023 C20orf144Q9BQM9 153 aa14.91□□□□□ -0.02
CLN3-240ENST00000631023 AKR1C8PQ5T2L2 129 aa14.9□□□□□ -0.02
CLN3-240ENST00000631023 CEMP1Q6PRD7 247 aaPredicted RBP14.9□□□□□ -0.02
CLN3-240ENST00000631023 C9orf47Q6ZRZ4 202 aa14.9□□□□□ -0.02
CLN3-240ENST00000631023 PHLDA1Q8WV24 401 aaPredicted RBP14.9□□□□□ -0.02
CLN3-240ENST00000631023 LINC01587Q99440 93 aa14.9□□□□□ -0.02
CLN3-240ENST00000631023 LOC102723971A0A1B0GUV8 181 aa14.9□□□□□ -0.02
CLN3-240ENST00000631023 KANTRA0A1W2PQU2 76 aa14.9□□□□□ -0.02
CLN3-240ENST00000631023 EMP1P54849 157 aa14.9□□□□□ -0.02
CLN3-240ENST00000631023 ERCC8Q13216 396 aa14.9□□□□□ -0.02
CLN3-240ENST00000631023 TMEM78Q5T7P6 136 aa14.9□□□□□ -0.02
CLN3-240ENST00000631023 ST6GAL2Q96JF0 529 aa14.9□□□□□ -0.02
CLN3-240ENST00000631023 AGPAT4-IT1Q9H0P7 198 aa14.9□□□□□ -0.02
CLN3-240ENST00000631023 KLK5Q9Y337 293 aaPredicted RBP14.9□□□□□ -0.02
CLN3-240ENST00000631023 STARD9Q9P2P6 4700 aa14.89□□□□□ -0.03
CLN3-240ENST00000631023 IGKV2-40A0A087WW87 121 aaPredicted RBP14.89□□□□□ -0.03
CLN3-240ENST00000631023 CXorf1O96002 111 aa14.89□□□□□ -0.03
CLN3-240ENST00000631023 IGKV2D-40P01614 121 aaPredicted RBP14.89□□□□□ -0.03
CLN3-240ENST00000631023 CMTM2Q8TAZ6 248 aa14.89□□□□□ -0.03
CLN3-240ENST00000631023 OTORQ9NRC9 128 aa14.89□□□□□ -0.03
CLN3-240ENST00000631023 TCTE3Q8IZS6 198 aa14.88□□□□□ -0.03
CLN3-240ENST00000631023 TEX48A0A1B0GUV7 120 aa14.87□□□□□ -0.03
CLN3-240ENST00000631023 RBAKDNA6NC62 111 aa14.87□□□□□ -0.03
CLN3-240ENST00000631023 PGPA6NDG6 321 aa14.87□□□□□ -0.03
CLN3-240ENST00000631023 ZNF705GA8MUZ8 300 aaPredicted RBP14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms