RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 PRR25Q96S07 402 aa17.73■□□□□ 0.43
VPS53-211ENST00000571805 MAP1LC3CQ9BXW4 147 aa17.73■□□□□ 0.43
VPS53-211ENST00000571805 ST20Q9HBF5 79 aa17.73■□□□□ 0.43
VPS53-211ENST00000571805 HINT1P49773 126 aaPredicted RBP17.72■□□□□ 0.43
VPS53-211ENST00000571805 TMSB15BA0A087X1C1 80 aa17.72■□□□□ 0.43
VPS53-211ENST00000571805 SAPCD1Q5SSQ6 148 aa17.72■□□□□ 0.43
VPS53-211ENST00000571805 ASH1LQ9NR48 2969 aaKnown RBP17.72■□□□□ 0.43
VPS53-211ENST00000571805 hDV102S1A0JD36 115 aa17.71■□□□□ 0.43
VPS53-211ENST00000571805 FAM106CPP0CH98 169 aa17.71■□□□□ 0.43
VPS53-211ENST00000571805 RELQ04864 619 aaPredicted RBP17.71■□□□□ 0.43
VPS53-211ENST00000571805 TMEM191AQ9H0A3 160 aa17.71■□□□□ 0.43
VPS53-211ENST00000571805 AP5S1Q9NUS5 200 aa17.71■□□□□ 0.43
VPS53-211ENST00000571805 HSPB8Q9UJY1 196 aa17.71■□□□□ 0.43
VPS53-211ENST00000571805 TMEM213A2RRL7 107 aa17.7■□□□□ 0.42
VPS53-211ENST00000571805 SCGB2A1O75556 95 aa17.7■□□□□ 0.42
VPS53-211ENST00000571805 IGFL4Q6B9Z1 124 aa17.7■□□□□ 0.42
VPS53-211ENST00000571805 VGLL1Q99990 258 aa17.7■□□□□ 0.42
VPS53-211ENST00000571805 HLA-DMBP28068 263 aa17.69■□□□□ 0.42
VPS53-211ENST00000571805 KLK9Q2XQG4 91 aa17.69■□□□□ 0.42
VPS53-211ENST00000571805 FAM110DQ8TAY7 271 aaPredicted RBP17.69■□□□□ 0.42
VPS53-211ENST00000571805 COL25A1Q9BXS0 654 aaPredicted RBP17.69■□□□□ 0.42
VPS53-211ENST00000571805 KLK9Q9UKQ9 250 aa17.69■□□□□ 0.42
VPS53-211ENST00000571805 U3KQK5 164 aa17.69■□□□□ 0.42
VPS53-211ENST00000571805 MED13LQ71F56 2210 aa17.69■□□□□ 0.42
VPS53-211ENST00000571805 SVEP1Q4LDE5 3571 aa17.69■□□□□ 0.42
VPS53-211ENST00000571805 IGHV2-70DA0A0C4DH43 119 aa17.69■□□□□ 0.42
VPS53-211ENST00000571805 FBLL1A6NHQ2 334 aaKnown RBP17.69■□□□□ 0.42
VPS53-211ENST00000571805 ZNF80P51504 273 aaPredicted RBP17.69■□□□□ 0.42
VPS53-211ENST00000571805 UBE2E1P51965 193 aa17.69■□□□□ 0.42
VPS53-211ENST00000571805 ZNF502Q8TBZ5 544 aa17.69■□□□□ 0.42
VPS53-211ENST00000571805 MCRIP2Q9BUT9 160 aaKnown RBP17.69■□□□□ 0.42
VPS53-211ENST00000571805 IGHV3OR16-8A0A075B7F1 116 aa17.68■□□□□ 0.42
VPS53-211ENST00000571805 IGHV3-35A0A0C4DH35 117 aa17.68■□□□□ 0.42
VPS53-211ENST00000571805 FAM104BQ5XKR9 115 aa17.68■□□□□ 0.42
VPS53-211ENST00000571805 ZNF575Q86XF7 245 aa17.68■□□□□ 0.42
VPS53-211ENST00000571805 TP73-AS1Q9UF72 201 aa17.68■□□□□ 0.42
VPS53-211ENST00000571805 PRSS3P2Q8NHM4 247 aa17.68■□□□□ 0.42
VPS53-211ENST00000571805 Q8TAT8 98 aa17.68■□□□□ 0.42
VPS53-211ENST00000571805 COL6A6A6NMZ7 2263 aa17.68■□□□□ 0.42
VPS53-211ENST00000571805 C15orf32Q32M92 178 aa17.67■□□□□ 0.42
VPS53-211ENST00000571805 LINC01545Q5VT33 79 aa17.67■□□□□ 0.42
VPS53-211ENST00000571805 FA2HQ7L5A8 372 aa17.67■□□□□ 0.42
VPS53-211ENST00000571805 ZNF747Q9BV97 191 aa17.67■□□□□ 0.42
VPS53-211ENST00000571805 SPTBN1Q01082 2364 aaKnown RBP17.67■□□□□ 0.42
VPS53-211ENST00000571805 D6R8Y8 96 aa17.67■□□□□ 0.42
VPS53-211ENST00000571805 GPR183P32249 361 aa17.66■□□□□ 0.42
VPS53-211ENST00000571805 IFI27P40305 119 aaPredicted RBP17.66■□□□□ 0.42
VPS53-211ENST00000571805 FAM106AQ4KMX7 169 aa17.66■□□□□ 0.42
VPS53-211ENST00000571805 UNQ5815/PRO19632Q6UWF5 114 aa17.66■□□□□ 0.42
VPS53-211ENST00000571805 AMN1Q8IY45 258 aa17.66■□□□□ 0.42
VPS53-211ENST00000571805 ZFAND3Q9H8U3 227 aa17.66■□□□□ 0.42
VPS53-211ENST00000571805 ATP6V0E1O15342 81 aa17.65■□□□□ 0.42
VPS53-211ENST00000571805 PSMG3-AS1Q96PY0 264 aa17.65■□□□□ 0.42
VPS53-211ENST00000571805 TIMM8BQ9Y5J9 83 aaPredicted RBP17.65■□□□□ 0.42
VPS53-211ENST00000571805 A0A096LNJ9 63 aa17.65■□□□□ 0.42
VPS53-211ENST00000571805 MUC21A0A0G2JKD1 596 aa17.65■□□□□ 0.42
VPS53-211ENST00000571805 MUC21A0A140T8X8 626 aa17.65■□□□□ 0.42
VPS53-211ENST00000571805 ECSCRQ19T08 205 aa17.65■□□□□ 0.42
VPS53-211ENST00000571805 MUC21Q5SSG8 566 aa17.65■□□□□ 0.42
VPS53-211ENST00000571805 OR10AG1Q8NH19 301 aa17.65■□□□□ 0.42
VPS53-211ENST00000571805 SIGLEC8Q9NYZ4 499 aa17.65■□□□□ 0.42
VPS53-211ENST00000571805 H0Y8G0 127 aa17.64■□□□□ 0.41
VPS53-211ENST00000571805 CLEC3BP05452 202 aa17.64■□□□□ 0.41
VPS53-211ENST00000571805 BMI1P35226 326 aa17.64■□□□□ 0.41
VPS53-211ENST00000571805 SAA4P35542 130 aa17.64■□□□□ 0.41
VPS53-211ENST00000571805 EFNA4P52798 201 aa17.64■□□□□ 0.41
VPS53-211ENST00000571805 RHOGP84095 191 aa17.64■□□□□ 0.41
VPS53-211ENST00000571805 LOXL1Q08397 574 aaPredicted RBP17.64■□□□□ 0.41
VPS53-211ENST00000571805 PRELID3AQ96N28 172 aa17.64■□□□□ 0.41
VPS53-211ENST00000571805 UBTD1Q9HAC8 227 aa17.64■□□□□ 0.41
VPS53-211ENST00000571805 HIVEP3Q5T1R4 2406 aa17.64■□□□□ 0.41
VPS53-211ENST00000571805 IGLC6P0CF74 106 aa17.64■□□□□ 0.41
VPS53-211ENST00000571805 S100A7P31151 101 aa17.64■□□□□ 0.41
VPS53-211ENST00000571805 RPS20P60866 119 aaKnown RBP17.64■□□□□ 0.41
VPS53-211ENST00000571805 LMO4P61968 165 aa17.64■□□□□ 0.41
VPS53-211ENST00000571805 MRPL51Q4U2R6 128 aaKnown RBP17.64■□□□□ 0.41
VPS53-211ENST00000571805 PMCHL2Q9BQD1 86 aa17.64■□□□□ 0.41
VPS53-211ENST00000571805 SCRT2Q9NQ03 307 aa17.64■□□□□ 0.41
VPS53-211ENST00000571805 HSBP1L1C9JCN9 74 aa17.63■□□□□ 0.41
VPS53-211ENST00000571805 BUB3O43684 328 aa17.63■□□□□ 0.41
VPS53-211ENST00000571805 A0A087X0K7 114 aa17.62■□□□□ 0.41
VPS53-211ENST00000571805 FOSL1P15407 271 aa17.62■□□□□ 0.41
VPS53-211ENST00000571805 ORMDL3Q8N138 153 aa17.62■□□□□ 0.41
VPS53-211ENST00000571805 FER1L6-AS1Q8NA97 138 aa17.62■□□□□ 0.41
VPS53-211ENST00000571805 ORAOV1Q8WV07 137 aa17.62■□□□□ 0.41
VPS53-211ENST00000571805 LOC389332A0A1B0GUA5 103 aa17.62■□□□□ 0.41
VPS53-211ENST00000571805 LINC01548A6NM66 108 aa17.62■□□□□ 0.41
VPS53-211ENST00000571805 SRSF2Q01130 221 aaKnown RBP17.62■□□□□ 0.41
VPS53-211ENST00000571805 SLC25A34Q6PIV7 304 aa17.62■□□□□ 0.41
VPS53-211ENST00000571805 MS4A6AQ9H2W1 248 aa17.62■□□□□ 0.41
VPS53-211ENST00000571805 NCR2O95944 276 aa17.61■□□□□ 0.41
VPS53-211ENST00000571805 Q6ZVH6 145 aa17.61■□□□□ 0.41
VPS53-211ENST00000571805 CLPSL1A2RUU4 121 aa17.61■□□□□ 0.41
VPS53-211ENST00000571805 PRAC2D3DTV9 90 aa17.61■□□□□ 0.41
VPS53-211ENST00000571805 CCDC140Q96MF4 163 aa17.61■□□□□ 0.41
VPS53-211ENST00000571805 G3V318 75 aa17.6■□□□□ 0.41
VPS53-211ENST00000571805 ERCC8Q13216 396 aa17.6■□□□□ 0.41
VPS53-211ENST00000571805 CENPVL3A0A0U1RRI6 287 aa17.6■□□□□ 0.41
VPS53-211ENST00000571805 RAB9AP51151 201 aa17.6■□□□□ 0.41
VPS53-211ENST00000571805 NHLH1Q02575 133 aa17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms