RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 TCRBV4S1A1TA0A5B7 111 aa4.19□□□□□ -1.74
USP28-213ENST00000544967 SMIM9A6NGZ8 99 aa4.19□□□□□ -1.74
USP28-213ENST00000544967 NPIPB5A8MRT5 1133 aa4.19□□□□□ -1.74
USP28-213ENST00000544967 DEFB108AA8MXU0 73 aa4.19□□□□□ -1.74
USP28-213ENST00000544967 MPV17P39210 176 aa4.19□□□□□ -1.74
USP28-213ENST00000544967 SLC35B1P78383 322 aa4.19□□□□□ -1.74
USP28-213ENST00000544967 NPIPB3Q92617 1050 aa4.19□□□□□ -1.74
USP28-213ENST00000544967 ARPC1AQ92747 370 aa4.19□□□□□ -1.74
USP28-213ENST00000544967 ZNF837Q96EG3 531 aaPredicted RBP4.19□□□□□ -1.74
USP28-213ENST00000544967 MRPL53Q96EL3 112 aaKnown RBP4.19□□□□□ -1.74
USP28-213ENST00000544967 CXXC4Q9H2H0 198 aa4.19□□□□□ -1.74
USP28-213ENST00000544967 PROCRQ9UNN8 238 aa4.19□□□□□ -1.74
USP28-213ENST00000544967 LINC00473A8K010 186 aa4.19□□□□□ -1.74
USP28-213ENST00000544967 IGLL5B9A064 214 aa4.19□□□□□ -1.74
USP28-213ENST00000544967 C19orf84I3L1E1 186 aa4.19□□□□□ -1.74
USP28-213ENST00000544967 OVOL3O00110 214 aa4.19□□□□□ -1.74
USP28-213ENST00000544967 P01737 135 aa4.19□□□□□ -1.74
USP28-213ENST00000544967 PRCDQ00LT1 54 aa4.19□□□□□ -1.74
USP28-213ENST00000544967 GAGE13Q4V321 117 aa4.19□□□□□ -1.74
USP28-213ENST00000544967 SBSPONQ8IVN8 264 aa4.19□□□□□ -1.74
USP28-213ENST00000544967 CEND1Q8N111 149 aa4.19□□□□□ -1.74
USP28-213ENST00000544967 THAP8Q8NA92 274 aa4.19□□□□□ -1.74
USP28-213ENST00000544967 NUP37Q8NFH4 326 aa4.19□□□□□ -1.74
USP28-213ENST00000544967 ZNF488Q96MN9 340 aa4.19□□□□□ -1.74
USP28-213ENST00000544967 EPDR1Q9UM22 224 aa4.19□□□□□ -1.74
USP28-213ENST00000544967 PIEZO2Q9H5I5 2752 aa4.18□□□□□ -1.74
USP28-213ENST00000544967 ALPK2Q86TB3 2170 aa4.18□□□□□ -1.74
USP28-213ENST00000544967 NDUFS7O75251 213 aa4.18□□□□□ -1.74
USP28-213ENST00000544967 HBDP02042 147 aa4.18□□□□□ -1.74
USP28-213ENST00000544967 SRD5A1P18405 259 aa4.18□□□□□ -1.74
USP28-213ENST00000544967 UBE2L3P68036 154 aaKnown RBP4.18□□□□□ -1.74
USP28-213ENST00000544967 FOXI1Q12951 378 aa4.18□□□□□ -1.74
USP28-213ENST00000544967 ABHD12Q8N2K0 398 aa4.18□□□□□ -1.74
USP28-213ENST00000544967 SSMEM1Q8WWF3 244 aa4.18□□□□□ -1.74
USP28-213ENST00000544967 PPDPFQ9H3Y8 114 aa4.18□□□□□ -1.74
USP28-213ENST00000544967 DOCK11Q5JSL3 2073 aa4.18□□□□□ -1.74
USP28-213ENST00000544967 ASH1LQ9NR48 2969 aaKnown RBP4.18□□□□□ -1.74
USP28-213ENST00000544967 C15orf65H3BRN8 121 aa4.18□□□□□ -1.74
USP28-213ENST00000544967 SPINT2O43291 252 aa4.18□□□□□ -1.74
USP28-213ENST00000544967 CA1P00915 261 aaPredicted RBP4.18□□□□□ -1.74
USP28-213ENST00000544967 Q6ZR03 302 aa4.18□□□□□ -1.74
USP28-213ENST00000544967 HIVEP3Q5T1R4 2406 aa4.18□□□□□ -1.74
USP28-213ENST00000544967 PRRC2CQ9Y520 2896 aaKnown RBP4.18□□□□□ -1.74
USP28-213ENST00000544967 A0A096LNJ9 63 aa4.18□□□□□ -1.74
USP28-213ENST00000544967 A0A1B0GUT8 65 aa4.18□□□□□ -1.74
USP28-213ENST00000544967 HSPB6O14558 160 aa4.18□□□□□ -1.74
USP28-213ENST00000544967 ENSAO43768 121 aaKnown RBP4.18□□□□□ -1.74
USP28-213ENST00000544967 FSTL3O95633 263 aa4.18□□□□□ -1.74
USP28-213ENST00000544967 ASIPP42127 132 aa4.18□□□□□ -1.74
USP28-213ENST00000544967 RRN3P1Q2M238 152 aa4.18□□□□□ -1.74
USP28-213ENST00000544967 Q6ZUT4 128 aa4.18□□□□□ -1.74
USP28-213ENST00000544967 FGFBP3Q8TAT2 258 aa4.18□□□□□ -1.74
USP28-213ENST00000544967 RPEQ96AT9 228 aa4.18□□□□□ -1.74
USP28-213ENST00000544967 FXYD5Q96DB9 178 aa4.18□□□□□ -1.74
USP28-213ENST00000544967 ZNF414Q96IQ9 312 aa4.18□□□□□ -1.74
USP28-213ENST00000544967 PAXXQ9BUH6 204 aa4.18□□□□□ -1.74
USP28-213ENST00000544967 CHAC1Q9BUX1 264 aa4.18□□□□□ -1.74
USP28-213ENST00000544967 NAV2Q8IVL1 2488 aa4.18□□□□□ -1.74
USP28-213ENST00000544967 PVRIGQ6DKI7 326 aa4.17□□□□□ -1.74
USP28-213ENST00000544967 COX8CQ7Z4L0 72 aa4.17□□□□□ -1.74
USP28-213ENST00000544967 DTX2Q86UW9 622 aa4.17□□□□□ -1.74
USP28-213ENST00000544967 Q8TCH9 128 aa4.17□□□□□ -1.74
USP28-213ENST00000544967 PPDPFLQ8WWR9 84 aa4.17□□□□□ -1.74
USP28-213ENST00000544967 TMEM158Q8WZ71 300 aa4.17□□□□□ -1.74
USP28-213ENST00000544967 S1PR3Q99500 378 aa4.17□□□□□ -1.74
USP28-213ENST00000544967 SSBP3Q9BWW4 388 aaPredicted RBP4.17□□□□□ -1.74
USP28-213ENST00000544967 IFI27L2Q9H2X8 130 aa4.17□□□□□ -1.74
USP28-213ENST00000544967 TP73-AS1Q9UF72 201 aa4.17□□□□□ -1.74
USP28-213ENST00000544967 USP9XQ93008 2570 aaPredicted RBP4.17□□□□□ -1.74
USP28-213ENST00000544967 INTS1Q8N201 2190 aaKnown RBP4.17□□□□□ -1.74
USP28-213ENST00000544967 ATP5LO75964 103 aa4.17□□□□□ -1.74
USP28-213ENST00000544967 ORM1P02763 201 aa4.17□□□□□ -1.74
USP28-213ENST00000544967 SPINK8P0C7L1 97 aa4.17□□□□□ -1.74
USP28-213ENST00000544967 PLP2Q04941 152 aa4.17□□□□□ -1.74
USP28-213ENST00000544967 C11orf71Q6IPW1 123 aa4.17□□□□□ -1.74
USP28-213ENST00000544967 BCL6BQ8N143 479 aaPredicted RBP4.17□□□□□ -1.74
USP28-213ENST00000544967 CENPVL3A0A0U1RRI6 287 aa4.16□□□□□ -1.74
USP28-213ENST00000544967 IQCF6A8MYZ5 107 aa4.16□□□□□ -1.74
USP28-213ENST00000544967 C16orf97H3BN30 126 aa4.16□□□□□ -1.74
USP28-213ENST00000544967 ZNHIT1O43257 154 aa4.16□□□□□ -1.74
USP28-213ENST00000544967 SUB1P53999 127 aaKnown RBP eCLIP4.16□□□□□ -1.74
USP28-213ENST00000544967 CFAP126Q5VTH2 177 aa4.16□□□□□ -1.74
USP28-213ENST00000544967 C22orf34Q6ZV56 151 aa4.16□□□□□ -1.74
USP28-213ENST00000544967 ITLN1Q8WWA0 313 aa4.16□□□□□ -1.74
USP28-213ENST00000544967 TMEM14CQ9P0S9 112 aa4.16□□□□□ -1.74
USP28-213ENST00000544967 ARID1AO14497 2285 aa4.16□□□□□ -1.74
USP28-213ENST00000544967 WFDC2Q14508 124 aa4.16□□□□□ -1.74
USP28-213ENST00000544967 ZGRF1Q86YA3 2104 aa4.16□□□□□ -1.74
USP28-213ENST00000544967 IFI27L1Q96BM0 104 aa4.16□□□□□ -1.74
USP28-213ENST00000544967 ZFYVE26Q68DK2 2539 aa4.16□□□□□ -1.74
USP28-213ENST00000544967 IGHV3-15A0A0B4J1V0 119 aa4.16□□□□□ -1.74
USP28-213ENST00000544967 ZNF503-AS2A6NEH8 195 aa4.16□□□□□ -1.74
USP28-213ENST00000544967 MRPL33O75394 65 aaKnown RBP4.16□□□□□ -1.74
USP28-213ENST00000544967 APOMO95445 188 aa4.16□□□□□ -1.74
USP28-213ENST00000544967 NCR2O95944 276 aa4.16□□□□□ -1.74
USP28-213ENST00000544967 FXYD2P54710 66 aa4.16□□□□□ -1.74
USP28-213ENST00000544967 KLF17Q5JT82 389 aaPredicted RBP4.16□□□□□ -1.74
USP28-213ENST00000544967 C10orf113Q5VZT2 155 aa4.16□□□□□ -1.74
USP28-213ENST00000544967 ZFAND6Q6FIF0 208 aa4.16□□□□□ -1.74
USP28-213ENST00000544967 PDPNQ86YL7 162 aa4.16□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms