RNA–Protein interactions for RNA: ENST00000535399.1

SFSWAP-204, Transcript of splicing factor SWAP, humanhuman

TSL 2

Gene SFSWAP, Length 778 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-204ENST00000535399 M0R3E3 92 aa16.45■□□□□ 0.22
SFSWAP-204ENST00000535399 SERF2P84101 59 aa16.45■□□□□ 0.22
SFSWAP-204ENST00000535399 CASC10Q5T4H9 136 aa16.45■□□□□ 0.22
SFSWAP-204ENST00000535399 ZFAND6Q6FIF0 208 aa16.45■□□□□ 0.22
SFSWAP-204ENST00000535399 ZNF705AQ6ZN79 300 aaPredicted RBP16.45■□□□□ 0.22
SFSWAP-204ENST00000535399 EXOC3-AS1Q8N2X6 119 aa16.45■□□□□ 0.22
SFSWAP-204ENST00000535399 IL17DQ8TAD2 202 aa16.45■□□□□ 0.22
SFSWAP-204ENST00000535399 GNPNAT1Q96EK6 184 aaPredicted RBP16.45■□□□□ 0.22
SFSWAP-204ENST00000535399 ST6GAL2Q96JF0 529 aa16.45■□□□□ 0.22
SFSWAP-204ENST00000535399 PRELID1Q9Y255 219 aa16.45■□□□□ 0.22
SFSWAP-204ENST00000535399 STARD9Q9P2P6 4700 aa16.44■□□□□ 0.22
SFSWAP-204ENST00000535399 IGHV4-28A0A0C4DH34 117 aa16.44■□□□□ 0.22
SFSWAP-204ENST00000535399 A0A1W2PPV4 95 aa16.44■□□□□ 0.22
SFSWAP-204ENST00000535399 M0R2Z0 102 aa16.44■□□□□ 0.22
SFSWAP-204ENST00000535399 DEFB4AO15263 64 aa16.44■□□□□ 0.22
SFSWAP-204ENST00000535399 RBMY1A1P0DJD3 496 aaKnown RBP16.44■□□□□ 0.22
SFSWAP-204ENST00000535399 RBMY1CP0DJD4 496 aa16.44■□□□□ 0.22
SFSWAP-204ENST00000535399 MIFP14174 115 aa16.44■□□□□ 0.22
SFSWAP-204ENST00000535399 UBE2L3P68036 154 aaKnown RBP16.44■□□□□ 0.22
SFSWAP-204ENST00000535399 ZNF345Q14585 488 aa16.44■□□□□ 0.22
SFSWAP-204ENST00000535399 RBMY1FQ15415 496 aaKnown RBP16.44■□□□□ 0.22
SFSWAP-204ENST00000535399 SPINK13Q1W4C9 94 aa16.44■□□□□ 0.22
SFSWAP-204ENST00000535399 KCNRGQ8N5I3 272 aa16.44■□□□□ 0.22
SFSWAP-204ENST00000535399 RPP25LQ8N5L8 163 aaKnown RBP16.44■□□□□ 0.22
SFSWAP-204ENST00000535399 OR10J6PQ8NGY7 276 aa16.44■□□□□ 0.22
SFSWAP-204ENST00000535399 PHYHIPLQ96FC7 376 aa16.44■□□□□ 0.22
SFSWAP-204ENST00000535399 BOLA2-SMG1P6H3BVE0 249 aa16.43■□□□□ 0.22
SFSWAP-204ENST00000535399 CRXO43186 299 aaPredicted RBP16.43■□□□□ 0.22
SFSWAP-204ENST00000535399 JTBO76095 146 aa16.43■□□□□ 0.22
SFSWAP-204ENST00000535399 AMBPP02760 352 aa16.43■□□□□ 0.22
SFSWAP-204ENST00000535399 C1orf158Q8N1D5 194 aa16.43■□□□□ 0.22
SFSWAP-204ENST00000535399 IGF2BP2-AS1Q96M15 143 aa16.43■□□□□ 0.22
SFSWAP-204ENST00000535399 MBP02144 154 aa16.42■□□□□ 0.22
SFSWAP-204ENST00000535399 ICAM4Q14773 271 aa16.42■□□□□ 0.22
SFSWAP-204ENST00000535399 AAMDCQ9H7C9 122 aa16.42■□□□□ 0.22
SFSWAP-204ENST00000535399 CSMD3Q7Z407 3707 aa16.42■□□□□ 0.22
SFSWAP-204ENST00000535399 HMGB3O15347 200 aaKnown RBP16.41■□□□□ 0.22
SFSWAP-204ENST00000535399 CDC34P49427 236 aaPredicted RBP16.41■□□□□ 0.22
SFSWAP-204ENST00000535399 PQLC2Q6ZP29 291 aa16.41■□□□□ 0.22
SFSWAP-204ENST00000535399 NEU1Q99519 415 aa16.41■□□□□ 0.22
SFSWAP-204ENST00000535399 GOLT1BQ9Y3E0 138 aa16.41■□□□□ 0.22
SFSWAP-204ENST00000535399 NPIPB6E9PJ23 425 aa16.4■□□□□ 0.22
SFSWAP-204ENST00000535399 BAP18Q8IXM2 172 aa16.4■□□□□ 0.22
SFSWAP-204ENST00000535399 RAB24Q969Q5 203 aa16.4■□□□□ 0.22
SFSWAP-204ENST00000535399 ARPC5LQ9BPX5 153 aa16.4■□□□□ 0.22
SFSWAP-204ENST00000535399 PPP1R14DQ9NXH3 145 aa16.4■□□□□ 0.22
SFSWAP-204ENST00000535399 IGHV3OR16-12A0A075B7B8 117 aa16.39■□□□□ 0.21
SFSWAP-204ENST00000535399 STAG3L2P0CL84 134 aa16.39■□□□□ 0.21
SFSWAP-204ENST00000535399 STAG3L3P0CL85 134 aa16.39■□□□□ 0.21
SFSWAP-204ENST00000535399 RANP62826 216 aaKnown RBP16.39■□□□□ 0.21
SFSWAP-204ENST00000535399 TCTE3Q8IZS6 198 aa16.39■□□□□ 0.21
SFSWAP-204ENST00000535399 LYPD1Q8N2G4 141 aa16.39■□□□□ 0.21
SFSWAP-204ENST00000535399 Q9H3A6 140 aa16.39■□□□□ 0.21
SFSWAP-204ENST00000535399 TRAV12-2A0A075B6T6 113 aa16.38■□□□□ 0.21
SFSWAP-204ENST00000535399 A0A0D9SG52 128 aa16.38■□□□□ 0.21
SFSWAP-204ENST00000535399 INSP01308 110 aa16.38■□□□□ 0.21
SFSWAP-204ENST00000535399 CT45A10P0DMU9 189 aa16.38■□□□□ 0.21
SFSWAP-204ENST00000535399 SMIM9A6NGZ8 99 aa16.37■□□□□ 0.21
SFSWAP-204ENST00000535399 ARL14EPLP0DKL9 152 aa16.37■□□□□ 0.21
SFSWAP-204ENST00000535399 CDKN1BP46527 198 aa16.37■□□□□ 0.21
SFSWAP-204ENST00000535399 ERCC8Q13216 396 aa16.37■□□□□ 0.21
SFSWAP-204ENST00000535399 ODF3Q96PU9 254 aa16.37■□□□□ 0.21
SFSWAP-204ENST00000535399 ACTR3CQ9C0K3 210 aaPredicted RBP16.37■□□□□ 0.21
SFSWAP-204ENST00000535399 KMT2CQ8NEZ4 4911 aaKnown RBP16.37■□□□□ 0.21
SFSWAP-204ENST00000535399 hCG_2014768A0A024R1R8 64 aa16.36■□□□□ 0.21
SFSWAP-204ENST00000535399 IGKV2-40A0A087WW87 121 aaPredicted RBP16.36■□□□□ 0.21
SFSWAP-204ENST00000535399 IGKV2D-40P01614 121 aaPredicted RBP16.36■□□□□ 0.21
SFSWAP-204ENST00000535399 SSX7Q7RTT5 188 aa16.36■□□□□ 0.21
SFSWAP-204ENST00000535399 BCL2L11O43521 198 aa16.35■□□□□ 0.21
SFSWAP-204ENST00000535399 TSPOP30536 169 aa16.35■□□□□ 0.21
SFSWAP-204ENST00000535399 PMS2P11Q13670 270 aa16.35■□□□□ 0.21
SFSWAP-204ENST00000535399 KIR3DS1Q14943 382 aa16.35■□□□□ 0.21
SFSWAP-204ENST00000535399 ZNF726P1Q15940 193 aa16.35■□□□□ 0.21
SFSWAP-204ENST00000535399 C11orf45Q8TAV5 145 aa16.35■□□□□ 0.21
SFSWAP-204ENST00000535399 AGPAT4-IT1Q9H0P7 198 aa16.35■□□□□ 0.21
SFSWAP-204ENST00000535399 GCHFRP30047 84 aa16.34■□□□□ 0.21
SFSWAP-204ENST00000535399 NANOS2P60321 138 aaKnown RBP16.34■□□□□ 0.21
SFSWAP-204ENST00000535399 AKR1C8PQ5T2L2 129 aa16.34■□□□□ 0.21
SFSWAP-204ENST00000535399 C9orf47Q6ZRZ4 202 aa16.34■□□□□ 0.21
SFSWAP-204ENST00000535399 SUN5Q8TC36 379 aa16.34■□□□□ 0.21
SFSWAP-204ENST00000535399 LINC00477Q96M19 166 aa16.34■□□□□ 0.21
SFSWAP-204ENST00000535399 VGLL1Q99990 258 aa16.34■□□□□ 0.21
SFSWAP-204ENST00000535399 TMEM208Q9BTX3 173 aa16.34■□□□□ 0.21
SFSWAP-204ENST00000535399 OTORQ9NRC9 128 aa16.34■□□□□ 0.21
SFSWAP-204ENST00000535399 KANTRA0A1W2PQU2 76 aa16.33■□□□□ 0.2
SFSWAP-204ENST00000535399 CXorf65A6NEN9 183 aa16.33■□□□□ 0.2
SFSWAP-204ENST00000535399 HBE1P02100 147 aa16.33■□□□□ 0.2
SFSWAP-204ENST00000535399 LEPP41159 167 aa16.33■□□□□ 0.2
SFSWAP-204ENST00000535399 TMUB2Q71RG4 321 aa16.33■□□□□ 0.2
SFSWAP-204ENST00000535399 FAM19A4Q96LR4 140 aa16.33■□□□□ 0.2
SFSWAP-204ENST00000535399 PGPA6NDG6 321 aa16.32■□□□□ 0.2
SFSWAP-204ENST00000535399 CSN1S1P47710 185 aa16.32■□□□□ 0.2
SFSWAP-204ENST00000535399 GFI1BQ5VTD9 330 aa16.32■□□□□ 0.2
SFSWAP-204ENST00000535399 ZNF471Q9BX82 626 aaPredicted RBP16.32■□□□□ 0.2
SFSWAP-204ENST00000535399 CELA1Q9UNI1 258 aa16.32■□□□□ 0.2
SFSWAP-204ENST00000535399 DYNC2H1Q8NCM8 4307 aaKnown RBP16.31■□□□□ 0.2
SFSWAP-204ENST00000535399 CTXND1A0A1B0GTU2 59 aa16.31■□□□□ 0.2
SFSWAP-204ENST00000535399 TMEM189A5PLL7 270 aa16.31■□□□□ 0.2
SFSWAP-204ENST00000535399 ZNF705GA8MUZ8 300 aaPredicted RBP16.31■□□□□ 0.2
SFSWAP-204ENST00000535399 CXorf1O96002 111 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 112.7 ms