RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 DYNLT1P63172 113 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 SUPT4H1P63272 117 aaKnown RBP0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 RELAQ04206 551 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 HSD52Q0P140 79 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 FOXF1Q12946 379 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 CATR1Q13166 79 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 CDK5R1Q15078 307 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 SS18Q15532 418 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 KISS1Q15726 138 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 ESRGQ1W209 222 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 LGALSLQ3ZCW2 172 aaPredicted RBP0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 FAM229BQ4G0N7 80 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 LINC00483Q53H64 154 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 Q56UQ5 140 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 MEIG1Q5JSS6 88 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 CLLU1Q5K131 121 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 COL5A1-AS1Q5SY13 56 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 FAM27BQ5VT28 67 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 C12orf73Q69YU5 71 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 Q6AWC8 147 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 MRPL54Q6P161 138 aaKnown RBP0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 SPINT4Q6UDR6 99 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 PATE2Q6UY27 113 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 SOSTDC1Q6X4U4 206 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 ATP11AUNQ6ZP68 121 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 FOXI2Q6ZQN5 318 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 ZNF826PQ6ZT77 177 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 Q6ZUT4 128 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 ADM2Q7Z4H4 148 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 SLC35E3Q7Z769 313 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 GKN2Q86XP6 184 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 KRTAP7-1Q8IUC3 87 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 OR5AS1Q8N127 324 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 Q8N2B8 174 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 SVBPQ8N300 66 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 C9orf62Q8N4C0 152 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 TTC9CQ8N5M4 171 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 RNF182Q8N6D2 247 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 PACRGLQ8N7B6 248 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 FAM216BQ8N7L0 139 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 LINC00301Q8NCQ3 95 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 PLPP5Q8NEB5 264 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 WFDC11Q8NEX6 87 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 OR5AK2Q8NH90 309 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 ATP6V0E2Q8NHE4 81 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 CCL4L1Q8NHW4 92 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 STAG3L4Q8TBR4 150 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 CLEC2BQ92478 149 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 AQP3Q92482 292 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 PSMF1Q92530 271 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 CHCHD1Q96BP2 118 aaKnown RBP0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 MUCL1Q96DR8 90 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 DPH3Q96FX2 82 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 HYLS1Q96M11 299 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 Q96M85 177 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 AQP10Q96PS8 301 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 CIB3Q96Q77 187 aaPredicted RBP0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 IMMP2LQ96T52 175 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 PKMYT1Q99640 499 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 RETNLBQ9BQ08 111 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 MRPL57Q9BQC6 102 aaKnown RBP0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 SLC50A1Q9BRV3 221 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 HIGD2AQ9BW72 106 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 SCRT1Q9BWW7 348 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 SNHG12Q9BXW3 62 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 SEC11CQ9BY50 192 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 C16orf95Q9H693 158 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 BCL2L10Q9HD36 194 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 C14orf132Q9NPU4 83 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 COMMD3Q9UBI1 195 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 PSORS1C2Q9UIG4 136 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 SCP2D1Q9UJQ7 156 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 RPL26L1Q9UNX3 145 aaKnown RBP0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 HHLA3Q9XRX5 114 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 TPRKBQ9Y3C4 175 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 AP4S1Q9Y587 144 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 DNAJC15Q9Y5T4 150 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 CHCHD2Q9Y6H1 151 aaPredicted RBP0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 LY96Q9Y6Y9 160 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 S4R3C0 116 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 HSPE1-MOB4S4R3N1 261 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 V9GYS6 101 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 ARHGAP5Q13017 1502 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 MAP3K1Q13233 1512 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 ARHGEF12Q9NZN5 1544 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 DOCK3Q8IZD9 2030 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 CEP162Q5TB80 1403 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 KDM5AP29375 1690 aaKnown RBP0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 TOPAZ1Q8N9V7 1692 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 LRP4O75096 1905 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 CHD4Q14839 1912 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 ATG2AQ2TAZ0 1938 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 PLXND1Q9Y4D7 1925 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 PRRC2AP48634 2157 aaKnown RBP0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 DYSFO75923 2080 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 WDR90Q96KV7 1748 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 CDC42BPBQ9Y5S2 1711 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 KDM6BO15054 1643 aa0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 COL16A1Q07092 1604 aaPredicted RBP0.35□□□□□ -2.35
RNU4-54P-201ENST00000516428 SHROOM2Q13796 1616 aa0.35□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms