RNA–Protein interactions for RNA: ENST00000474025.1

SNRNP40-204, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 3

Gene SNRNP40, Length 581 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-204ENST00000474025 GFI1BQ5VTD9 330 aa3.48□□□□□ -1.85
SNRNP40-204ENST00000474025 Q6ZTI0 123 aa3.48□□□□□ -1.85
SNRNP40-204ENST00000474025 TMED4Q7Z7H5 227 aa3.48□□□□□ -1.85
SNRNP40-204ENST00000474025 NFE4Q86UQ8 179 aa3.48□□□□□ -1.85
SNRNP40-204ENST00000474025 OR1S1Q8NH92 325 aa3.48□□□□□ -1.85
SNRNP40-204ENST00000474025 DEFB104AQ8WTQ1 72 aa3.48□□□□□ -1.85
SNRNP40-204ENST00000474025 RPUSD4Q96CM3 377 aaKnown RBP3.48□□□□□ -1.85
SNRNP40-204ENST00000474025 SHANK2-AS3Q9BTD1 123 aa3.48□□□□□ -1.85
SNRNP40-204ENST00000474025 TMEM70Q9BUB7 260 aa3.48□□□□□ -1.85
SNRNP40-204ENST00000474025 PARD6GQ9BYG4 376 aaPredicted RBP3.48□□□□□ -1.85
SNRNP40-204ENST00000474025 PPP1R14DQ9NXH3 145 aa3.48□□□□□ -1.85
SNRNP40-204ENST00000474025 EXTL2Q9UBQ6 330 aa3.48□□□□□ -1.85
SNRNP40-204ENST00000474025 DISC1C4P0D8 188 aa3.47□□□□□ -1.85
SNRNP40-204ENST00000474025 MRPS12O15235 138 aaKnown RBP3.47□□□□□ -1.85
SNRNP40-204ENST00000474025 PLA2G1BP04054 148 aaKnown RBP3.47□□□□□ -1.85
SNRNP40-204ENST00000474025 AKR1C4P17516 323 aa3.47□□□□□ -1.85
SNRNP40-204ENST00000474025 S100A7P31151 101 aa3.47□□□□□ -1.85
SNRNP40-204ENST00000474025 SSBP1Q04837 148 aaKnown RBP3.47□□□□□ -1.85
SNRNP40-204ENST00000474025 ACOT7LQ6ZUV0 252 aa3.47□□□□□ -1.85
SNRNP40-204ENST00000474025 CCDC28AQ8IWP9 274 aa3.47□□□□□ -1.85
SNRNP40-204ENST00000474025 OR51S1Q8NGJ8 323 aa3.47□□□□□ -1.85
SNRNP40-204ENST00000474025 C15orf40Q8WUR7 153 aa3.47□□□□□ -1.85
SNRNP40-204ENST00000474025 PRRT1Q99946 306 aa3.47□□□□□ -1.85
SNRNP40-204ENST00000474025 C1orf43Q9BWL3 253 aa3.47□□□□□ -1.85
SNRNP40-204ENST00000474025 PAIP2BQ9ULR5 123 aaKnown RBP3.47□□□□□ -1.85
SNRNP40-204ENST00000474025 HIGD1AQ9Y241 93 aa3.47□□□□□ -1.85
SNRNP40-204ENST00000474025 KCNIP3Q9Y2W7 256 aa3.47□□□□□ -1.85
SNRNP40-204ENST00000474025 TRGV2A0A075B6R0 118 aa3.46□□□□□ -1.86
SNRNP40-204ENST00000474025 A0A087WWL8 130 aa3.46□□□□□ -1.86
SNRNP40-204ENST00000474025 LINC00854A0A1B0GVQ3 168 aa3.46□□□□□ -1.86
SNRNP40-204ENST00000474025 PMS2P5A8MQ11 134 aa3.46□□□□□ -1.86
SNRNP40-204ENST00000474025 PRAC2D3DTV9 90 aa3.46□□□□□ -1.86
SNRNP40-204ENST00000474025 NOL3O60936 208 aaKnown RBP3.46□□□□□ -1.86
SNRNP40-204ENST00000474025 TSC22D2O75157 780 aa3.46□□□□□ -1.86
SNRNP40-204ENST00000474025 HYPMO75409 117 aa3.46□□□□□ -1.86
SNRNP40-204ENST00000474025 ATP6V1G2O95670 118 aa3.46□□□□□ -1.86
SNRNP40-204ENST00000474025 OXTP01178 125 aa3.46□□□□□ -1.86
SNRNP40-204ENST00000474025 LINC00869P0C866 280 aa3.46□□□□□ -1.86
SNRNP40-204ENST00000474025 AKAIN1P0CW23 69 aa3.46□□□□□ -1.86
SNRNP40-204ENST00000474025 SLC25A6P12236 298 aa3.46□□□□□ -1.86
SNRNP40-204ENST00000474025 CXCL2P19875 107 aa3.46□□□□□ -1.86
SNRNP40-204ENST00000474025 PLP1P60201 277 aa3.46□□□□□ -1.86
SNRNP40-204ENST00000474025 RAP2BP61225 183 aa3.46□□□□□ -1.86
SNRNP40-204ENST00000474025 SRPXP78539 464 aa3.46□□□□□ -1.86
SNRNP40-204ENST00000474025 MRPS10P82664 201 aaKnown RBP3.46□□□□□ -1.86
SNRNP40-204ENST00000474025 AKR1C1Q04828 323 aa3.46□□□□□ -1.86
SNRNP40-204ENST00000474025 ZNF674Q2M3X9 581 aa3.46□□□□□ -1.86
SNRNP40-204ENST00000474025 LCN15Q6UWW0 184 aa3.46□□□□□ -1.86
SNRNP40-204ENST00000474025 CYP2G1PQ6ZSU1 146 aa3.46□□□□□ -1.86
SNRNP40-204ENST00000474025 IQCF2Q8IXL9 164 aa3.46□□□□□ -1.86
SNRNP40-204ENST00000474025 ZBTB8BQ8NAP8 495 aaPredicted RBP3.46□□□□□ -1.86
SNRNP40-204ENST00000474025 C11orf72Q8NBR9 251 aa3.46□□□□□ -1.86
SNRNP40-204ENST00000474025 LRRC20Q8TCA0 184 aa3.46□□□□□ -1.86
SNRNP40-204ENST00000474025 SMIM4Q8WVI0 70 aa3.46□□□□□ -1.86
SNRNP40-204ENST00000474025 AP3S1Q92572 193 aa3.46□□□□□ -1.86
SNRNP40-204ENST00000474025 CIB3Q96Q77 187 aaPredicted RBP3.46□□□□□ -1.86
SNRNP40-204ENST00000474025 PYGO2Q9BRQ0 406 aa3.46□□□□□ -1.86
SNRNP40-204ENST00000474025 LINC00467Q9BRT7 94 aa3.46□□□□□ -1.86
SNRNP40-204ENST00000474025 FUNDC2Q9BWH2 189 aa3.46□□□□□ -1.86
SNRNP40-204ENST00000474025 MIXL1Q9H2W2 232 aa3.46□□□□□ -1.86
SNRNP40-204ENST00000474025 VCX3AQ9NNX9 186 aa3.46□□□□□ -1.86
SNRNP40-204ENST00000474025 ZNF331Q9NQX6 463 aaPredicted RBP3.46□□□□□ -1.86
SNRNP40-204ENST00000474025 FAM30AQ9NZY2 134 aa3.46□□□□□ -1.86
SNRNP40-204ENST00000474025 ICOSQ9Y6W8 199 aa3.46□□□□□ -1.86
SNRNP40-204ENST00000474025 TRAV9-2A0A087WT02 112 aa3.45□□□□□ -1.86
SNRNP40-204ENST00000474025 A0A087WXM4 84 aa3.45□□□□□ -1.86
SNRNP40-204ENST00000474025 IGLV5-52A0A0A0MRZ9 124 aa3.45□□□□□ -1.86
SNRNP40-204ENST00000474025 TRGV1A0A0A0MS02 117 aa3.45□□□□□ -1.86
SNRNP40-204ENST00000474025 TRAV12-3A0A0B4J271 114 aa3.45□□□□□ -1.86
SNRNP40-204ENST00000474025 DUXBA0A1W2PPF3 345 aa3.45□□□□□ -1.86
SNRNP40-204ENST00000474025 ANKRD20A5PA0PJZ0 165 aa3.45□□□□□ -1.86
SNRNP40-204ENST00000474025 H3BP45 60 aa3.45□□□□□ -1.86
SNRNP40-204ENST00000474025 K7EP13 123 aa3.45□□□□□ -1.86
SNRNP40-204ENST00000474025 WRBO00258 174 aa3.45□□□□□ -1.86
SNRNP40-204ENST00000474025 SLC17A3O00476 420 aa3.45□□□□□ -1.86
SNRNP40-204ENST00000474025 SYNGR2O43760 224 aa3.45□□□□□ -1.86
SNRNP40-204ENST00000474025 ZNF324O75467 553 aaPredicted RBP3.45□□□□□ -1.86
SNRNP40-204ENST00000474025 MED6O75586 246 aa3.45□□□□□ -1.86
SNRNP40-204ENST00000474025 IL5P05113 134 aa3.45□□□□□ -1.86
SNRNP40-204ENST00000474025 SNRPCP09234 159 aaKnown RBP3.45□□□□□ -1.86
SNRNP40-204ENST00000474025 OR5G3P0C626 314 aa3.45□□□□□ -1.86
SNRNP40-204ENST00000474025 CT45A10P0DMU9 189 aa3.45□□□□□ -1.86
SNRNP40-204ENST00000474025 ANXA3P12429 323 aa3.45□□□□□ -1.86
SNRNP40-204ENST00000474025 RPP30P78346 268 aaKnown RBP3.45□□□□□ -1.86
SNRNP40-204ENST00000474025 SPANXN5Q5MJ07 72 aa3.45□□□□□ -1.86
SNRNP40-204ENST00000474025 LYPD5Q6UWN5 251 aa3.45□□□□□ -1.86
SNRNP40-204ENST00000474025 PET117Q6UWS5 81 aa3.45□□□□□ -1.86
SNRNP40-204ENST00000474025 PATE2Q6UY27 113 aa3.45□□□□□ -1.86
SNRNP40-204ENST00000474025 CCDC190Q86UF4 302 aa3.45□□□□□ -1.86
SNRNP40-204ENST00000474025 WFDC10BQ8IUB3 73 aa3.45□□□□□ -1.86
SNRNP40-204ENST00000474025 CLVS1Q8IUQ0 354 aaPredicted RBP3.45□□□□□ -1.86
SNRNP40-204ENST00000474025 ZNF680Q8NEM1 530 aa3.45□□□□□ -1.86
SNRNP40-204ENST00000474025 ZNF431Q8TF32 576 aaPredicted RBP3.45□□□□□ -1.86
SNRNP40-204ENST00000474025 ST6GAL2Q96JF0 529 aa3.45□□□□□ -1.86
SNRNP40-204ENST00000474025 ODF3Q96PU9 254 aa3.45□□□□□ -1.86
SNRNP40-204ENST00000474025 SLC50A1Q9BRV3 221 aa3.45□□□□□ -1.86
SNRNP40-204ENST00000474025 GSN-AS1Q9NRJ2 163 aa3.45□□□□□ -1.86
SNRNP40-204ENST00000474025 MSRB1Q9NZV6 116 aa3.45□□□□□ -1.86
SNRNP40-204ENST00000474025 FUT9Q9Y231 359 aa3.45□□□□□ -1.86
SNRNP40-204ENST00000474025 LY96Q9Y6Y9 160 aa3.45□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 142.2 ms