RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 RPRMQ9NS64 109 aa8.72□□□□□ -1.01
VPS52-213ENST00000461743 HLA-DRB4X5D2U9 266 aa8.72□□□□□ -1.01
VPS52-213ENST00000461743 COLCA2A8K830 154 aa8.71□□□□□ -1.02
VPS52-213ENST00000461743 MRPS12O15235 138 aaKnown RBP8.71□□□□□ -1.02
VPS52-213ENST00000461743 SPRY2O43597 315 aa8.71□□□□□ -1.02
VPS52-213ENST00000461743 CA1P00915 261 aaPredicted RBP8.71□□□□□ -1.02
VPS52-213ENST00000461743 IFNA5P01569 189 aa8.71□□□□□ -1.02
VPS52-213ENST00000461743 NUTF2P61970 127 aaKnown RBP8.71□□□□□ -1.02
VPS52-213ENST00000461743 ZNF266Q14584 549 aa8.71□□□□□ -1.02
VPS52-213ENST00000461743 ACTL10Q5JWF8 245 aa8.71□□□□□ -1.02
VPS52-213ENST00000461743 BAP18Q8IXM2 172 aa8.71□□□□□ -1.02
VPS52-213ENST00000461743 AQP10Q96PS8 301 aa8.71□□□□□ -1.02
VPS52-213ENST00000461743 SLC50A1Q9BRV3 221 aa8.71□□□□□ -1.02
VPS52-213ENST00000461743 C1QTNF4Q9BXJ3 329 aa8.71□□□□□ -1.02
VPS52-213ENST00000461743 CLEC5AQ9NY25 188 aa8.71□□□□□ -1.02
VPS52-213ENST00000461743 H3BMM0 161 aa8.7□□□□□ -1.02
VPS52-213ENST00000461743 C3orf84H3BNL1 204 aa8.7□□□□□ -1.02
VPS52-213ENST00000461743 GUK1Q16774 197 aa8.7□□□□□ -1.02
VPS52-213ENST00000461743 C2CD4CQ8TF44 421 aa8.7□□□□□ -1.02
VPS52-213ENST00000461743 C17orf77Q96MU5 243 aa8.7□□□□□ -1.02
VPS52-213ENST00000461743 MRPL32Q9BYC8 188 aaKnown RBP8.7□□□□□ -1.02
VPS52-213ENST00000461743 NIT2Q9NQR4 276 aa8.7□□□□□ -1.02
VPS52-213ENST00000461743 KNCNA6PVL3 124 aa8.69□□□□□ -1.02
VPS52-213ENST00000461743 A8MTW9 85 aa8.69□□□□□ -1.02
VPS52-213ENST00000461743 ZNF253O75346 499 aa8.69□□□□□ -1.02
VPS52-213ENST00000461743 MT-ND4LP03901 98 aa8.69□□□□□ -1.02
VPS52-213ENST00000461743 IGLC2P0DOY2 106 aa8.69□□□□□ -1.02
VPS52-213ENST00000461743 SNRPEP62304 92 aaKnown RBP8.69□□□□□ -1.02
VPS52-213ENST00000461743 EIF5AL1Q6IS14 154 aaKnown RBP8.69□□□□□ -1.02
VPS52-213ENST00000461743 EBLN2Q6P2I7 272 aa8.69□□□□□ -1.02
VPS52-213ENST00000461743 ZFP82Q8N141 532 aa8.69□□□□□ -1.02
VPS52-213ENST00000461743 IL17DQ8TAD2 202 aa8.69□□□□□ -1.02
VPS52-213ENST00000461743 MUC7Q8TAX7 377 aa8.69□□□□□ -1.02
VPS52-213ENST00000461743 SCGB1C1Q8TD33 95 aa8.69□□□□□ -1.02
VPS52-213ENST00000461743 HIST1H2BAQ96A08 127 aa8.69□□□□□ -1.02
VPS52-213ENST00000461743 HRH4Q9H3N8 390 aa8.69□□□□□ -1.02
VPS52-213ENST00000461743 TMEM14CQ9P0S9 112 aa8.69□□□□□ -1.02
VPS52-213ENST00000461743 TIMM9Q9Y5J7 89 aa8.69□□□□□ -1.02
VPS52-213ENST00000461743 STARD9Q9P2P6 4700 aa8.69□□□□□ -1.02
VPS52-213ENST00000461743 A0A0J9YX75 114 aa8.68□□□□□ -1.02
VPS52-213ENST00000461743 PDE6HQ13956 83 aa8.68□□□□□ -1.02
VPS52-213ENST00000461743 TMPRSS5Q9H3S3 457 aa8.68□□□□□ -1.02
VPS52-213ENST00000461743 CYTL1Q9NRR1 136 aa8.68□□□□□ -1.02
VPS52-213ENST00000461743 TRAV8-2A0A0B4J237 113 aa8.67□□□□□ -1.02
VPS52-213ENST00000461743 DUSP14O95147 198 aaKnown RBP8.67□□□□□ -1.02
VPS52-213ENST00000461743 SFTA3P0C7M3 94 aa8.67□□□□□ -1.02
VPS52-213ENST00000461743 RAB5CP51148 216 aa8.67□□□□□ -1.02
VPS52-213ENST00000461743 DNLZQ5SXM8 178 aa8.67□□□□□ -1.02
VPS52-213ENST00000461743 FAM78BQ5VT40 261 aa8.67□□□□□ -1.02
VPS52-213ENST00000461743 MORN5Q5VZ52 161 aa8.67□□□□□ -1.02
VPS52-213ENST00000461743 C20orf173Q96LM9 149 aa8.67□□□□□ -1.02
VPS52-213ENST00000461743 LYSTQ99698 3801 aa8.67□□□□□ -1.02
VPS52-213ENST00000461743 SMIM3Q9BZL3 60 aa8.67□□□□□ -1.02
VPS52-213ENST00000461743 C11orf68Q9H3H3 251 aaKnown RBP8.67□□□□□ -1.02
VPS52-213ENST00000461743 ZNF331Q9NQX6 463 aaPredicted RBP8.67□□□□□ -1.02
VPS52-213ENST00000461743 ZNF705EA8MWA4 302 aaPredicted RBP8.66□□□□□ -1.02
VPS52-213ENST00000461743 TAAR5O14804 337 aa8.66□□□□□ -1.02
VPS52-213ENST00000461743 GIG44P09565 113 aaPredicted RBP8.66□□□□□ -1.02
VPS52-213ENST00000461743 SRSF3P84103 164 aaKnown RBP8.66□□□□□ -1.02
VPS52-213ENST00000461743 PSG3Q16557 428 aa8.66□□□□□ -1.02
VPS52-213ENST00000461743 GDF5OSQ5U4N7 250 aa8.66□□□□□ -1.02
VPS52-213ENST00000461743 ZNF738Q8NE65 137 aa8.66□□□□□ -1.02
VPS52-213ENST00000461743 MRPL53Q96EL3 112 aaKnown RBP8.66□□□□□ -1.02
VPS52-213ENST00000461743 RARRES2Q99969 163 aa8.66□□□□□ -1.02
VPS52-213ENST00000461743 PSMG3Q9BT73 122 aaPredicted RBP8.66□□□□□ -1.02
VPS52-213ENST00000461743 FUT9Q9Y231 359 aa8.66□□□□□ -1.02
VPS52-213ENST00000461743 DYNC2H1Q8NCM8 4307 aaKnown RBP8.66□□□□□ -1.02
VPS52-213ENST00000461743 TENM2Q9NT68 2774 aa8.65□□□□□ -1.02
VPS52-213ENST00000461743 AMBPP02760 352 aa8.65□□□□□ -1.02
VPS52-213ENST00000461743 HIST1H1EP10412 219 aaKnown RBP8.65□□□□□ -1.02
VPS52-213ENST00000461743 MIFP14174 115 aa8.65□□□□□ -1.02
VPS52-213ENST00000461743 TAS2R45P59539 299 aa8.65□□□□□ -1.02
VPS52-213ENST00000461743 RHOBP62745 196 aa8.65□□□□□ -1.02
VPS52-213ENST00000461743 PSG9Q00887 426 aa8.65□□□□□ -1.02
VPS52-213ENST00000461743 KHDC3LQ587J8 217 aa8.65□□□□□ -1.02
VPS52-213ENST00000461743 GCSAMLQ5JQS6 135 aa8.65□□□□□ -1.02
VPS52-213ENST00000461743 FFAR4Q5NUL3 377 aa8.65□□□□□ -1.02
VPS52-213ENST00000461743 OR2G3Q8NGZ4 309 aa8.65□□□□□ -1.02
VPS52-213ENST00000461743 TMED6Q8WW62 240 aa8.65□□□□□ -1.02
VPS52-213ENST00000461743 WFDC1Q9HC57 220 aa8.65□□□□□ -1.02
VPS52-213ENST00000461743 TRBV19A0A075B6N1 114 aa8.64□□□□□ -1.03
VPS52-213ENST00000461743 SLC17A3O00476 420 aa8.64□□□□□ -1.03
VPS52-213ENST00000461743 SULT1A2P50226 295 aa8.64□□□□□ -1.03
VPS52-213ENST00000461743 PPT1P50897 306 aa8.64□□□□□ -1.03
VPS52-213ENST00000461743 RAB2AP61019 212 aa8.64□□□□□ -1.03
VPS52-213ENST00000461743 FABP9Q0Z7S8 132 aa8.64□□□□□ -1.03
VPS52-213ENST00000461743 RHEBQ15382 184 aa8.64□□□□□ -1.03
VPS52-213ENST00000461743 ACOT6Q3I5F7 207 aaPredicted RBP8.64□□□□□ -1.03
VPS52-213ENST00000461743 RNF182Q8N6D2 247 aa8.64□□□□□ -1.03
VPS52-213ENST00000461743 CSNK1G2-AS1Q8NCQ2 148 aa8.64□□□□□ -1.03
VPS52-213ENST00000461743 OR4B1Q8NGF8 309 aa8.64□□□□□ -1.03
VPS52-213ENST00000461743 OR11H2Q8NH07 326 aa8.64□□□□□ -1.03
VPS52-213ENST00000461743 FAM167A-AS1Q96KT0 104 aa8.64□□□□□ -1.03
VPS52-213ENST00000461743 SLC25A2Q9BXI2 301 aa8.64□□□□□ -1.03
VPS52-213ENST00000461743 BORCS7-ASMTA0A0B4J1R7 106 aa8.63□□□□□ -1.03
VPS52-213ENST00000461743 TRAV5A0A0B4J249 113 aa8.63□□□□□ -1.03
VPS52-213ENST00000461743 A0A0J9YWU9 116 aa8.63□□□□□ -1.03
VPS52-213ENST00000461743 F6UB75 175 aa8.63□□□□□ -1.03
VPS52-213ENST00000461743 H3BQ15 152 aa8.63□□□□□ -1.03
VPS52-213ENST00000461743 MBP02144 154 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms