RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 BATF3Q9NR55 127 aa13.75□□□□□ -0.21
USP40-207ENST00000450940 PPP1R14DQ9NXH3 145 aa13.75□□□□□ -0.21
USP40-207ENST00000450940 PRAC2D3DTV9 90 aa13.74□□□□□ -0.21
USP40-207ENST00000450940 E5RGE8 158 aa13.74□□□□□ -0.21
USP40-207ENST00000450940 H0YIZ8 118 aa13.74□□□□□ -0.21
USP40-207ENST00000450940 H3BTX0 84 aa13.74□□□□□ -0.21
USP40-207ENST00000450940 AZU1P20160 251 aa13.74□□□□□ -0.21
USP40-207ENST00000450940 TAS2R60P59551 318 aa13.74□□□□□ -0.21
USP40-207ENST00000450940 DAD1P61803 113 aa13.74□□□□□ -0.21
USP40-207ENST00000450940 CYCSP99999 105 aaKnown RBP13.74□□□□□ -0.21
USP40-207ENST00000450940 C20orf144Q9BQM9 153 aa13.74□□□□□ -0.21
USP40-207ENST00000450940 SLC25A31Q9H0C2 315 aa13.74□□□□□ -0.21
USP40-207ENST00000450940 ZNF586Q9NXT0 402 aa13.74□□□□□ -0.21
USP40-207ENST00000450940 TMEM14CQ9P0S9 112 aa13.74□□□□□ -0.21
USP40-207ENST00000450940 PRB4P10163 310 aaPredicted RBP13.73□□□□□ -0.21
USP40-207ENST00000450940 LINC01587Q99440 93 aa13.73□□□□□ -0.21
USP40-207ENST00000450940 NPCDR1Q9BY65 106 aa13.73□□□□□ -0.21
USP40-207ENST00000450940 OR5AC2Q9NZP5 309 aa13.73□□□□□ -0.21
USP40-207ENST00000450940 H2BFSP57053 126 aa13.72□□□□□ -0.21
USP40-207ENST00000450940 OR5C1Q8NGR4 320 aa13.72□□□□□ -0.21
USP40-207ENST00000450940 OR10J6PQ8NGY7 276 aa13.72□□□□□ -0.21
USP40-207ENST00000450940 ODF3Q96PU9 254 aa13.72□□□□□ -0.21
USP40-207ENST00000450940 TRBV19A0A075B6N1 114 aa13.71□□□□□ -0.21
USP40-207ENST00000450940 HIST1H1EP10412 219 aaKnown RBP13.71□□□□□ -0.21
USP40-207ENST00000450940 ZNF493Q6ZR52 646 aa13.71□□□□□ -0.21
USP40-207ENST00000450940 MRPL53Q96EL3 112 aaKnown RBP13.71□□□□□ -0.21
USP40-207ENST00000450940 NPIPB6E9PJ23 425 aa13.7□□□□□ -0.22
USP40-207ENST00000450940 NDUFB4O95168 129 aa13.7□□□□□ -0.22
USP40-207ENST00000450940 HTN3P15516 51 aa13.7□□□□□ -0.22
USP40-207ENST00000450940 PDE6HQ13956 83 aa13.7□□□□□ -0.22
USP40-207ENST00000450940 KIR3DS1Q14943 382 aa13.7□□□□□ -0.22
USP40-207ENST00000450940 C16orf74Q96GX8 76 aa13.7□□□□□ -0.22
USP40-207ENST00000450940 HECTD4Q9Y4D8 3996 aa13.69□□□□□ -0.22
USP40-207ENST00000450940 H7BYZ3 331 aa13.69□□□□□ -0.22
USP40-207ENST00000450940 CT45A10P0DMU9 189 aa13.69□□□□□ -0.22
USP40-207ENST00000450940 DEFA1P59665 94 aa13.69□□□□□ -0.22
USP40-207ENST00000450940 DEFA3P59666 94 aa13.69□□□□□ -0.22
USP40-207ENST00000450940 LRRC37A5PQ49AS3 106 aa13.69□□□□□ -0.22
USP40-207ENST00000450940 GCSAMLQ5JQS6 135 aa13.69□□□□□ -0.22
USP40-207ENST00000450940 THAP6Q8TBB0 222 aa13.69□□□□□ -0.22
USP40-207ENST00000450940 PRELID1Q9Y255 219 aa13.69□□□□□ -0.22
USP40-207ENST00000450940 DNAH17Q9UFH2 4485 aa13.68□□□□□ -0.22
USP40-207ENST00000450940 RNF212Q495C1 297 aa13.68□□□□□ -0.22
USP40-207ENST00000450940 GFI1BQ5VTD9 330 aa13.68□□□□□ -0.22
USP40-207ENST00000450940 TMEM88Q6PEY1 159 aa13.68□□□□□ -0.22
USP40-207ENST00000450940 RNASE8Q8TDE3 154 aaKnown RBP13.68□□□□□ -0.22
USP40-207ENST00000450940 PPP1R1CQ8WVI7 109 aa13.68□□□□□ -0.22
USP40-207ENST00000450940 FAM167A-AS1Q96KT0 104 aa13.68□□□□□ -0.22
USP40-207ENST00000450940 PARD6GQ9BYG4 376 aaPredicted RBP13.68□□□□□ -0.22
USP40-207ENST00000450940 WDR61Q9GZS3 305 aaKnown RBP13.68□□□□□ -0.22
USP40-207ENST00000450940 TIMM8BQ9Y5J9 83 aaPredicted RBP13.68□□□□□ -0.22
USP40-207ENST00000450940 CBY3A6NI87 242 aa13.67□□□□□ -0.22
USP40-207ENST00000450940 DEFB130BP0DP73 79 aa13.67□□□□□ -0.22
USP40-207ENST00000450940 DEFB130AP0DP74 79 aa13.67□□□□□ -0.22
USP40-207ENST00000450940 PYYP10082 97 aa13.67□□□□□ -0.22
USP40-207ENST00000450940 FCN2Q15485 313 aa13.67□□□□□ -0.22
USP40-207ENST00000450940 TMEM263Q8WUH6 116 aaKnown RBP13.67□□□□□ -0.22
USP40-207ENST00000450940 SLC25A2Q9BXI2 301 aa13.67□□□□□ -0.22
USP40-207ENST00000450940 M0R3E3 92 aa13.66□□□□□ -0.22
USP40-207ENST00000450940 MPC2O95563 127 aa13.66□□□□□ -0.22
USP40-207ENST00000450940 LEPP41159 167 aa13.66□□□□□ -0.22
USP40-207ENST00000450940 CLINT1Q14677 625 aa13.66□□□□□ -0.22
USP40-207ENST00000450940 C15orf53Q8NAA6 179 aa13.66□□□□□ -0.22
USP40-207ENST00000450940 KCNIP2Q9NS61 270 aa13.66□□□□□ -0.22
USP40-207ENST00000450940 NACAE9PAV3 2078 aa13.66□□□□□ -0.22
USP40-207ENST00000450940 DNAH2Q9P225 4427 aa13.65□□□□□ -0.22
USP40-207ENST00000450940 HTN1P15515 57 aa13.65□□□□□ -0.22
USP40-207ENST00000450940 LGALS9BQ3B8N2 356 aa13.65□□□□□ -0.22
USP40-207ENST00000450940 MIR17HGQ75NE6 70 aa13.65□□□□□ -0.22
USP40-207ENST00000450940 FAM19A4Q96LR4 140 aa13.65□□□□□ -0.22
USP40-207ENST00000450940 TIMM9Q9Y5J7 89 aa13.65□□□□□ -0.22
USP40-207ENST00000450940 SSNA1O43805 119 aa13.64□□□□□ -0.23
USP40-207ENST00000450940 LINC00336Q6ZUF6 198 aa13.64□□□□□ -0.23
USP40-207ENST00000450940 LINC00612Q8N6U2 182 aa13.64□□□□□ -0.23
USP40-207ENST00000450940 LINC00477Q96M19 166 aa13.64□□□□□ -0.23
USP40-207ENST00000450940 ATP5SQ99766 215 aa13.64□□□□□ -0.23
USP40-207ENST00000450940 MRPL32Q9BYC8 188 aaKnown RBP13.64□□□□□ -0.23
USP40-207ENST00000450940 HSPB11Q9Y547 144 aa13.64□□□□□ -0.23
USP40-207ENST00000450940 FAT2Q9NYQ8 4349 aa13.63□□□□□ -0.23
USP40-207ENST00000450940 ATP5G1P05496 136 aa13.63□□□□□ -0.23
USP40-207ENST00000450940 NBEAP1P0C6P0 100 aa13.63□□□□□ -0.23
USP40-207ENST00000450940 PET100P0DJ07 73 aa13.63□□□□□ -0.23
USP40-207ENST00000450940 ATP5G3P48201 142 aa13.63□□□□□ -0.23
USP40-207ENST00000450940 EXOC3-AS1Q8N2X6 119 aa13.63□□□□□ -0.23
USP40-207ENST00000450940 BLNKQ8WV28 456 aa13.63□□□□□ -0.23
USP40-207ENST00000450940 AGPAT4-IT1Q9H0P7 198 aa13.63□□□□□ -0.23
USP40-207ENST00000450940 NOP10Q9NPE3 64 aaKnown RBP13.63□□□□□ -0.23
USP40-207ENST00000450940 KLLNB2CW77 178 aa13.62□□□□□ -0.23
USP40-207ENST00000450940 C17orf112F2Z3M2 114 aa13.62□□□□□ -0.23
USP40-207ENST00000450940 SLC25A5P05141 298 aaKnown RBP13.62□□□□□ -0.23
USP40-207ENST00000450940 ERCC8Q13216 396 aa13.62□□□□□ -0.23
USP40-207ENST00000450940 Q6ZR54 194 aa13.62□□□□□ -0.23
USP40-207ENST00000450940 C9orf47Q6ZRZ4 202 aa13.62□□□□□ -0.23
USP40-207ENST00000450940 UBE2DNLQ8IWF7 75 aa13.62□□□□□ -0.23
USP40-207ENST00000450940 CCDC28AQ8IWP9 274 aa13.62□□□□□ -0.23
USP40-207ENST00000450940 FXYD5Q96DB9 178 aa13.62□□□□□ -0.23
USP40-207ENST00000450940 PYGO2Q9BRQ0 406 aa13.62□□□□□ -0.23
USP40-207ENST00000450940 OR51M1Q9H341 326 aa13.62□□□□□ -0.23
USP40-207ENST00000450940 AAMDCQ9H7C9 122 aa13.62□□□□□ -0.23
USP40-207ENST00000450940 FUT9Q9Y231 359 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms