RNA–Protein interactions for RNA: ENST00000434425.5

RFC3-202, Transcript of replication factor C subunit 3, humanhuman

TSL 5 BASIC

Gene RFC3, Length 1,461 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3-202ENST00000434425 CCL17Q92583 94 aa4.3□□□□□ -1.72
RFC3-202ENST00000434425 HIST1H2BHQ93079 126 aa4.3□□□□□ -1.72
RFC3-202ENST00000434425 HIST1H2BNQ99877 126 aa4.3□□□□□ -1.72
RFC3-202ENST00000434425 HIST1H2BMQ99879 126 aa4.3□□□□□ -1.72
RFC3-202ENST00000434425 MAP6D1Q9H9H5 199 aa4.3□□□□□ -1.72
RFC3-202ENST00000434425 CKLFQ9UBR5 152 aa4.3□□□□□ -1.72
RFC3-202ENST00000434425 AMMECR1Q9Y4X0 333 aaPredicted RBP4.3□□□□□ -1.72
RFC3-202ENST00000434425 ABCA1O95477 2261 aa4.3□□□□□ -1.72
RFC3-202ENST00000434425 MED12LQ86YW9 2145 aa4.3□□□□□ -1.72
RFC3-202ENST00000434425 USF3Q68DE3 2245 aa4.3□□□□□ -1.72
RFC3-202ENST00000434425 TRGV11A0A075B6L2 103 aa4.3□□□□□ -1.72
RFC3-202ENST00000434425 A0A1W2PPR1 153 aa4.3□□□□□ -1.72
RFC3-202ENST00000434425 C9orf118A6NHY6 69 aa4.3□□□□□ -1.72
RFC3-202ENST00000434425 F5H5P2 479 aa4.3□□□□□ -1.72
RFC3-202ENST00000434425 TIMM23O14925 209 aa4.3□□□□□ -1.72
RFC3-202ENST00000434425 CD5LO43866 347 aa4.3□□□□□ -1.72
RFC3-202ENST00000434425 SLC25A4P12235 298 aa4.3□□□□□ -1.72
RFC3-202ENST00000434425 IFITM1P13164 125 aa4.3□□□□□ -1.72
RFC3-202ENST00000434425 CRYGSP22914 178 aa4.3□□□□□ -1.72
RFC3-202ENST00000434425 NFYBP25208 207 aa4.3□□□□□ -1.72
RFC3-202ENST00000434425 SNCAP37840 140 aa4.3□□□□□ -1.72
RFC3-202ENST00000434425 NMUP48645 174 aa4.3□□□□□ -1.72
RFC3-202ENST00000434425 HERVK_113P63121 156 aa4.3□□□□□ -1.72
RFC3-202ENST00000434425 QRFPP83859 136 aa4.3□□□□□ -1.72
RFC3-202ENST00000434425 PAX8Q06710 450 aa4.3□□□□□ -1.72
RFC3-202ENST00000434425 DIAPH2-AS1Q14236 149 aa4.3□□□□□ -1.72
RFC3-202ENST00000434425 KLF17Q5JT82 389 aaPredicted RBP4.3□□□□□ -1.72
RFC3-202ENST00000434425 ZNF493Q6ZR52 646 aa4.3□□□□□ -1.72
RFC3-202ENST00000434425 SAXO1Q8IYX7 474 aa4.3□□□□□ -1.72
RFC3-202ENST00000434425 C3orf22Q8N5N4 141 aa4.3□□□□□ -1.72
RFC3-202ENST00000434425 SLC25A40Q8TBP6 338 aa4.3□□□□□ -1.72
RFC3-202ENST00000434425 AQP3Q92482 292 aa4.3□□□□□ -1.72
RFC3-202ENST00000434425 AP1S3Q96PC3 154 aa4.3□□□□□ -1.72
RFC3-202ENST00000434425 TAS2R4Q9NYW5 299 aa4.3□□□□□ -1.72
RFC3-202ENST00000434425 SPRR3Q9UBC9 169 aa4.3□□□□□ -1.72
RFC3-202ENST00000434425 CLCF1Q9UBD9 225 aa4.3□□□□□ -1.72
RFC3-202ENST00000434425 ANAPC10Q9UM13 185 aa4.3□□□□□ -1.72
RFC3-202ENST00000434425 IGKV1D-8A0A087WSZ0 117 aa4.29□□□□□ -1.72
RFC3-202ENST00000434425 TRGV10A0A0A0MS01 117 aa4.29□□□□□ -1.72
RFC3-202ENST00000434425 TEX48A0A1B0GUV7 120 aa4.29□□□□□ -1.72
RFC3-202ENST00000434425 LOC107986453A0A1B0GWG9 222 aa4.29□□□□□ -1.72
RFC3-202ENST00000434425 INAFM1C9JVW0 142 aa4.29□□□□□ -1.72
RFC3-202ENST00000434425 C11orf98E9PRG8 122 aa4.29□□□□□ -1.72
RFC3-202ENST00000434425 H0YIZ8 118 aa4.29□□□□□ -1.72
RFC3-202ENST00000434425 K7EP34 96 aa4.29□□□□□ -1.72
RFC3-202ENST00000434425 ISLRO14498 428 aa4.29□□□□□ -1.72
RFC3-202ENST00000434425 CD3DP04234 171 aa4.29□□□□□ -1.72
RFC3-202ENST00000434425 SEC11BP0C7V7 166 aa4.29□□□□□ -1.72
RFC3-202ENST00000434425 CCL3P10147 92 aa4.29□□□□□ -1.72
RFC3-202ENST00000434425 PTHLHP12272 177 aa4.29□□□□□ -1.72
RFC3-202ENST00000434425 ZNF823P16415 610 aa4.29□□□□□ -1.72
RFC3-202ENST00000434425 RPS27P42677 84 aaKnown RBP4.29□□□□□ -1.72
RFC3-202ENST00000434425 SLURP1P55000 103 aa4.29□□□□□ -1.72
RFC3-202ENST00000434425 LINC00310P59036 64 aa4.29□□□□□ -1.72
RFC3-202ENST00000434425 FOXI1Q12951 378 aa4.29□□□□□ -1.72
RFC3-202ENST00000434425 ZNF345Q14585 488 aa4.29□□□□□ -1.72
RFC3-202ENST00000434425 TMEM183BQ1AE95 376 aa4.29□□□□□ -1.72
RFC3-202ENST00000434425 RRN3P1Q2M238 152 aa4.29□□□□□ -1.72
RFC3-202ENST00000434425 KIAA1644Q3SXP7 199 aa4.29□□□□□ -1.72
RFC3-202ENST00000434425 ZNF260Q3ZCT1 412 aa4.29□□□□□ -1.72
RFC3-202ENST00000434425 MRPL54Q6P161 138 aaKnown RBP4.29□□□□□ -1.72
RFC3-202ENST00000434425 NOTCH2NLQ7Z3S9 236 aa4.29□□□□□ -1.72
RFC3-202ENST00000434425 SLC25A42Q86VD7 318 aa4.29□□□□□ -1.72
RFC3-202ENST00000434425 RNASE6Q93091 150 aaKnown RBP4.29□□□□□ -1.72
RFC3-202ENST00000434425 METTL26Q96S19 204 aa4.29□□□□□ -1.72
RFC3-202ENST00000434425 TM2D3Q9BRN9 247 aa4.29□□□□□ -1.72
RFC3-202ENST00000434425 SEC61A2Q9H9S3 476 aa4.29□□□□□ -1.72
RFC3-202ENST00000434425 PXMP4Q9Y6I8 212 aa4.29□□□□□ -1.72
RFC3-202ENST00000434425 PRR14LQ5THK1 2151 aa4.29□□□□□ -1.72
RFC3-202ENST00000434425 TRAV14DV4A0A0A6YYC5 116 aa4.28□□□□□ -1.72
RFC3-202ENST00000434425 TRGV5A0A0B4J1U4 118 aa4.28□□□□□ -1.72
RFC3-202ENST00000434425 IGHV2-26A0A0B4J1V2 119 aa4.28□□□□□ -1.72
RFC3-202ENST00000434425 IGHV3OR16-9A0A0B4J2B5 98 aa4.28□□□□□ -1.72
RFC3-202ENST00000434425 FAM236AA0A1B0GUQ0 79 aa4.28□□□□□ -1.72
RFC3-202ENST00000434425 FAM236BA0A1B0GV22 79 aa4.28□□□□□ -1.72
RFC3-202ENST00000434425 TMEM14DPA8MWL7 114 aa4.28□□□□□ -1.72
RFC3-202ENST00000434425 SNURFLB1AK76 121 aa4.28□□□□□ -1.72
RFC3-202ENST00000434425 ZNF736B4DX44 427 aaPredicted RBP4.28□□□□□ -1.72
RFC3-202ENST00000434425 DIRC3C9JPN6 131 aa4.28□□□□□ -1.72
RFC3-202ENST00000434425 TMEM262E9PQX1 116 aa4.28□□□□□ -1.72
RFC3-202ENST00000434425 SOCS1O15524 211 aa4.28□□□□□ -1.72
RFC3-202ENST00000434425 HLA-DOBP13765 273 aa4.28□□□□□ -1.72
RFC3-202ENST00000434425 PRR3P79522 188 aaKnown RBP4.28□□□□□ -1.72
RFC3-202ENST00000434425 VMA21Q3ZAQ7 101 aa4.28□□□□□ -1.72
RFC3-202ENST00000434425 FBXL19-AS1Q494R0 122 aa4.28□□□□□ -1.72
RFC3-202ENST00000434425 CENPWQ5EE01 88 aa4.28□□□□□ -1.72
RFC3-202ENST00000434425 LYRM7Q5U5X0 104 aa4.28□□□□□ -1.72
RFC3-202ENST00000434425 ZNF660Q6AZW8 331 aaPredicted RBP4.28□□□□□ -1.72
RFC3-202ENST00000434425 ZNF880Q6PDB4 577 aa4.28□□□□□ -1.72
RFC3-202ENST00000434425 SLC22A24Q8N4F4 322 aa4.28□□□□□ -1.72
RFC3-202ENST00000434425 OR4B1Q8NGF8 309 aa4.28□□□□□ -1.72
RFC3-202ENST00000434425 OR4A5Q8NH83 315 aa4.28□□□□□ -1.72
RFC3-202ENST00000434425 NEUROG1Q92886 237 aa4.28□□□□□ -1.72
RFC3-202ENST00000434425 MRPL20Q9BYC9 149 aaKnown RBP4.28□□□□□ -1.72
RFC3-202ENST00000434425 PROK2Q9HC23 129 aa4.28□□□□□ -1.72
RFC3-202ENST00000434425 OTORQ9NRC9 128 aa4.28□□□□□ -1.72
RFC3-202ENST00000434425 TMEM100Q9NV29 134 aa4.28□□□□□ -1.72
RFC3-202ENST00000434425 PAM16Q9Y3D7 125 aa4.28□□□□□ -1.72
RFC3-202ENST00000434425 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP4.28□□□□□ -1.729e-11■■■■■ 41.1
RFC3-202ENST00000434425 TRBV6-7A0A0A0MS04 114 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms