RNA–Protein interactions for RNA: ENST00000417088.2

RPS28-201, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 334 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-201ENST00000417088 GAGE12BA1L429 117 aa10.28□□□□□ -0.76
RPS28-201ENST00000417088 H3BQ15 152 aa10.28□□□□□ -0.76
RPS28-201ENST00000417088 ZNF701M0R085 212 aaPredicted RBP10.28□□□□□ -0.76
RPS28-201ENST00000417088 COX7A2P2O60397 106 aa10.28□□□□□ -0.76
RPS28-201ENST00000417088 GAGE7O76087 117 aa10.28□□□□□ -0.76
RPS28-201ENST00000417088 GAGE12FP0CL80 117 aa10.28□□□□□ -0.76
RPS28-201ENST00000417088 GAGE12GP0CL81 117 aa10.28□□□□□ -0.76
RPS28-201ENST00000417088 GAGE12IP0CL82 117 aa10.28□□□□□ -0.76
RPS28-201ENST00000417088 IGLC2P0DOY2 106 aa10.28□□□□□ -0.76
RPS28-201ENST00000417088 HOXA5P20719 270 aa10.28□□□□□ -0.76
RPS28-201ENST00000417088 MITD1Q8WV92 249 aa10.28□□□□□ -0.76
RPS28-201ENST00000417088 SDHCQ99643 169 aaPredicted RBP10.28□□□□□ -0.76
RPS28-201ENST00000417088 RBM38Q9H0Z9 239 aaKnown RBP10.28□□□□□ -0.76
RPS28-201ENST00000417088 C10orf113Q5VZT2 155 aa10.27□□□□□ -0.77
RPS28-201ENST00000417088 MAPKAPK5-AS1Q8N8E1 139 aa10.27□□□□□ -0.77
RPS28-201ENST00000417088 PXMP4Q9Y6I8 212 aa10.27□□□□□ -0.77
RPS28-201ENST00000417088 SNURFLB1AK76 121 aa10.26□□□□□ -0.77
RPS28-201ENST00000417088 J3KRW8 73 aa10.26□□□□□ -0.77
RPS28-201ENST00000417088 RLN2P04090 185 aa10.26□□□□□ -0.77
RPS28-201ENST00000417088 CT45A10P0DMU9 189 aa10.26□□□□□ -0.77
RPS28-201ENST00000417088 ESRGQ1W209 222 aa10.26□□□□□ -0.77
RPS28-201ENST00000417088 TTC32Q5I0X7 151 aa10.26□□□□□ -0.77
RPS28-201ENST00000417088 SPATA12Q7Z6I5 190 aa10.26□□□□□ -0.77
RPS28-201ENST00000417088 UPK3BQ9BT76 320 aa10.26□□□□□ -0.77
RPS28-201ENST00000417088 DNAJC4Q9NNZ3 241 aa10.26□□□□□ -0.77
RPS28-201ENST00000417088 TRAV5A0A0B4J249 113 aa10.25□□□□□ -0.77
RPS28-201ENST00000417088 TRAV12-3A0A0B4J271 114 aa10.25□□□□□ -0.77
RPS28-201ENST00000417088 CENPXA8MT69 81 aa10.25□□□□□ -0.77
RPS28-201ENST00000417088 NPIPB6E9PJ23 425 aa10.25□□□□□ -0.77
RPS28-201ENST00000417088 H3BNG1 76 aa10.25□□□□□ -0.77
RPS28-201ENST00000417088 CCSO14618 274 aa10.25□□□□□ -0.77
RPS28-201ENST00000417088 LEPP41159 167 aa10.25□□□□□ -0.77
RPS28-201ENST00000417088 CAMLGP49069 296 aa10.25□□□□□ -0.77
RPS28-201ENST00000417088 ZNF431Q8TF32 576 aaPredicted RBP10.25□□□□□ -0.77
RPS28-201ENST00000417088 ODF3Q96PU9 254 aa10.25□□□□□ -0.77
RPS28-201ENST00000417088 Q9H3A6 140 aa10.25□□□□□ -0.77
RPS28-201ENST00000417088 L7N2F9 121 aa10.24□□□□□ -0.77
RPS28-201ENST00000417088 VAMP2P63027 116 aa10.24□□□□□ -0.77
RPS28-201ENST00000417088 DAZ2Q13117 558 aaKnown RBP10.24□□□□□ -0.77
RPS28-201ENST00000417088 GUK1Q16774 197 aa10.24□□□□□ -0.77
RPS28-201ENST00000417088 MIC13Q5XKP0 118 aa10.24□□□□□ -0.77
RPS28-201ENST00000417088 Q6ZRG5 221 aa10.24□□□□□ -0.77
RPS28-201ENST00000417088 Q6ZTI0 123 aa10.24□□□□□ -0.77
RPS28-201ENST00000417088 NRARPQ7Z6K4 114 aa10.24□□□□□ -0.77
RPS28-201ENST00000417088 PYGO2Q9BRQ0 406 aa10.24□□□□□ -0.77
RPS28-201ENST00000417088 ZNF586Q9NXT0 402 aa10.24□□□□□ -0.77
RPS28-201ENST00000417088 MRPS16Q9Y3D3 137 aaKnown RBP10.24□□□□□ -0.77
RPS28-201ENST00000417088 A0A1W2PPQ1 181 aa10.23□□□□□ -0.77
RPS28-201ENST00000417088 CST7O76096 145 aa10.23□□□□□ -0.77
RPS28-201ENST00000417088 IL7P13232 177 aa10.23□□□□□ -0.77
RPS28-201ENST00000417088 BCAP31P51572 246 aa10.23□□□□□ -0.77
RPS28-201ENST00000417088 RAB31Q13636 194 aa10.23□□□□□ -0.77
RPS28-201ENST00000417088 CNPY1Q3B7I2 92 aa10.23□□□□□ -0.77
RPS28-201ENST00000417088 TMPRSS5Q9H3S3 457 aa10.23□□□□□ -0.77
RPS28-201ENST00000417088 C11orf1Q9H5F2 150 aa10.23□□□□□ -0.77
RPS28-201ENST00000417088 WDR83OSQ9Y284 106 aa10.23□□□□□ -0.77
RPS28-201ENST00000417088 LSM5Q9Y4Y9 91 aaKnown RBP10.23□□□□□ -0.77
RPS28-201ENST00000417088 FAM24AA6NFZ4 105 aa10.22□□□□□ -0.77
RPS28-201ENST00000417088 BTF3P20290 206 aaKnown RBP10.22□□□□□ -0.77
RPS28-201ENST00000417088 CAV2P51636 162 aa10.22□□□□□ -0.77
RPS28-201ENST00000417088 KRTAP10-2P60368 255 aa10.22□□□□□ -0.77
RPS28-201ENST00000417088 ZNF846Q147U1 533 aa10.22□□□□□ -0.77
RPS28-201ENST00000417088 Q8N1X5 172 aa10.22□□□□□ -0.77
RPS28-201ENST00000417088 OR1L4Q8NGR5 311 aa10.22□□□□□ -0.77
RPS28-201ENST00000417088 VSIG2Q96IQ7 327 aa10.22□□□□□ -0.77
RPS28-201ENST00000417088 C20orf85Q9H1P6 137 aa10.22□□□□□ -0.77
RPS28-201ENST00000417088 UQCC1Q9NVA1 299 aa10.22□□□□□ -0.77
RPS28-201ENST00000417088 FAM25EA8MYX2 175 aa10.21□□□□□ -0.77
RPS28-201ENST00000417088 M0R3E3 92 aa10.21□□□□□ -0.77
RPS28-201ENST00000417088 PLA2G10O15496 165 aa10.21□□□□□ -0.77
RPS28-201ENST00000417088 ZNF253O75346 499 aa10.21□□□□□ -0.77
RPS28-201ENST00000417088 SLC25A5P05141 298 aaKnown RBP10.21□□□□□ -0.77
RPS28-201ENST00000417088 RPL29P47914 159 aaKnown RBP10.21□□□□□ -0.77
RPS28-201ENST00000417088 ERCC8Q13216 396 aa10.21□□□□□ -0.77
RPS28-201ENST00000417088 VWC2Q2TAL6 325 aa10.21□□□□□ -0.77
RPS28-201ENST00000417088 C11orf72Q8NBR9 251 aa10.21□□□□□ -0.77
RPS28-201ENST00000417088 PFDN5Q99471 154 aa10.21□□□□□ -0.77
RPS28-201ENST00000417088 GSN-AS1Q9NRJ2 163 aa10.21□□□□□ -0.77
RPS28-201ENST00000417088 SLC39A9Q9NUM3 307 aa10.21□□□□□ -0.77
RPS28-201ENST00000417088 TRBV19A0A075B6N1 114 aa10.2□□□□□ -0.78
RPS28-201ENST00000417088 A0A096LPF7 62 aa10.2□□□□□ -0.78
RPS28-201ENST00000417088 C7orf71A4D174 169 aa10.2□□□□□ -0.78
RPS28-201ENST00000417088 ZNF324O75467 553 aaPredicted RBP10.2□□□□□ -0.78
RPS28-201ENST00000417088 MRPL53Q96EL3 112 aaKnown RBP10.2□□□□□ -0.78
RPS28-201ENST00000417088 FAM19A4Q96LR4 140 aa10.2□□□□□ -0.78
RPS28-201ENST00000417088 C18orf15Q96N68 181 aa10.2□□□□□ -0.78
RPS28-201ENST00000417088 SCRT2Q9NQ03 307 aa10.2□□□□□ -0.78
RPS28-201ENST00000417088 TRGV2A0A075B6R0 118 aa10.19□□□□□ -0.78
RPS28-201ENST00000417088 C5orf51A6NDU8 294 aa10.19□□□□□ -0.78
RPS28-201ENST00000417088 KLLNB2CW77 178 aa10.19□□□□□ -0.78
RPS28-201ENST00000417088 NDUFB4O95168 129 aa10.19□□□□□ -0.78
RPS28-201ENST00000417088 TCRBP04435 133 aa10.19□□□□□ -0.78
RPS28-201ENST00000417088 CD300CQ08708 224 aa10.19□□□□□ -0.78
RPS28-201ENST00000417088 C12orf45Q8N5I9 185 aaPredicted RBP10.19□□□□□ -0.78
RPS28-201ENST00000417088 ZNF680Q8NEM1 530 aa10.19□□□□□ -0.78
RPS28-201ENST00000417088 CHAC2Q8WUX2 184 aa10.19□□□□□ -0.78
RPS28-201ENST00000417088 C2orf50Q96LR7 162 aa10.19□□□□□ -0.78
RPS28-201ENST00000417088 SEC22CQ9BRL7 303 aa10.19□□□□□ -0.78
RPS28-201ENST00000417088 LINC00467Q9BRT7 94 aa10.19□□□□□ -0.78
RPS28-201ENST00000417088 TMEM14CQ9P0S9 112 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms