RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 AAMDCQ9H7C9 122 aa15.74■□□□□ 0.11
CLN3-207ENST00000395653 A0A1W2PPV4 95 aa15.73■□□□□ 0.11
CLN3-207ENST00000395653 HMSDA8MTL9 139 aa15.73■□□□□ 0.11
CLN3-207ENST00000395653 PRAC2D3DTV9 90 aa15.73■□□□□ 0.11
CLN3-207ENST00000395653 BOLA2-SMG1P6H3BVE0 249 aa15.73■□□□□ 0.11
CLN3-207ENST00000395653 JTBO76095 146 aa15.73■□□□□ 0.11
CLN3-207ENST00000395653 MBP02144 154 aa15.73■□□□□ 0.11
CLN3-207ENST00000395653 UBE2L3P68036 154 aaKnown RBP15.73■□□□□ 0.11
CLN3-207ENST00000395653 OR10J6PQ8NGY7 276 aa15.73■□□□□ 0.11
CLN3-207ENST00000395653 SH3BGRL3Q9H299 93 aa15.73■□□□□ 0.11
CLN3-207ENST00000395653 CSMD3Q7Z407 3707 aa15.72■□□□□ 0.11
CLN3-207ENST00000395653 IGHV4-28A0A0C4DH34 117 aa15.72■□□□□ 0.11
CLN3-207ENST00000395653 SPINK13Q1W4C9 94 aa15.72■□□□□ 0.11
CLN3-207ENST00000395653 FAM122CQ6P4D5 195 aa15.72■□□□□ 0.11
CLN3-207ENST00000395653 OR11H4Q8NGC9 324 aa15.72■□□□□ 0.11
CLN3-207ENST00000395653 IGF2BP2-AS1Q96M15 143 aa15.72■□□□□ 0.11
CLN3-207ENST00000395653 NEU1Q99519 415 aa15.72■□□□□ 0.11
CLN3-207ENST00000395653 M0R2Z0 102 aa15.71■□□□□ 0.11
CLN3-207ENST00000395653 M0R3E3 92 aa15.71■□□□□ 0.11
CLN3-207ENST00000395653 PRB4P10163 310 aaPredicted RBP15.71■□□□□ 0.11
CLN3-207ENST00000395653 ZFAND6Q6FIF0 208 aa15.71■□□□□ 0.11
CLN3-207ENST00000395653 PQLC2Q6ZP29 291 aa15.71■□□□□ 0.11
CLN3-207ENST00000395653 EXOC3-AS1Q8N2X6 119 aa15.71■□□□□ 0.11
CLN3-207ENST00000395653 KCNRGQ8N5I3 272 aa15.71■□□□□ 0.11
CLN3-207ENST00000395653 RPP25LQ8N5L8 163 aaKnown RBP15.71■□□□□ 0.11
CLN3-207ENST00000395653 PPP1R14DQ9NXH3 145 aa15.71■□□□□ 0.11
CLN3-207ENST00000395653 GOLT1BQ9Y3E0 138 aa15.71■□□□□ 0.11
CLN3-207ENST00000395653 CRXO43186 299 aaPredicted RBP15.7■□□□□ 0.1
CLN3-207ENST00000395653 CDC34P49427 236 aaPredicted RBP15.7■□□□□ 0.1
CLN3-207ENST00000395653 C1orf158Q8N1D5 194 aa15.7■□□□□ 0.1
CLN3-207ENST00000395653 LYPD1Q8N2G4 141 aa15.7■□□□□ 0.1
CLN3-207ENST00000395653 PHYHIPLQ96FC7 376 aa15.7■□□□□ 0.1
CLN3-207ENST00000395653 CYTL1Q9NRR1 136 aa15.7■□□□□ 0.1
CLN3-207ENST00000395653 STARD9Q9P2P6 4700 aa15.7■□□□□ 0.1
CLN3-207ENST00000395653 SMIM9A6NGZ8 99 aa15.69■□□□□ 0.1
CLN3-207ENST00000395653 NPIPB6E9PJ23 425 aa15.69■□□□□ 0.1
CLN3-207ENST00000395653 DEFB4AO15263 64 aa15.69■□□□□ 0.1
CLN3-207ENST00000395653 EIF3GO75821 320 aaKnown RBP eCLIP15.69■□□□□ 0.1
CLN3-207ENST00000395653 INSP01308 110 aa15.69■□□□□ 0.1
CLN3-207ENST00000395653 RBMY1A1P0DJD3 496 aaKnown RBP15.69■□□□□ 0.1
CLN3-207ENST00000395653 RBMY1CP0DJD4 496 aa15.69■□□□□ 0.1
CLN3-207ENST00000395653 ICAM4Q14773 271 aa15.69■□□□□ 0.1
CLN3-207ENST00000395653 RBMY1FQ15415 496 aaKnown RBP15.69■□□□□ 0.1
CLN3-207ENST00000395653 ST6GAL2Q96JF0 529 aa15.69■□□□□ 0.1
CLN3-207ENST00000395653 ARPC5LQ9BPX5 153 aa15.68■□□□□ 0.1
CLN3-207ENST00000395653 IGHV3OR16-12A0A075B7B8 117 aa15.68■□□□□ 0.1
CLN3-207ENST00000395653 STAG3L2P0CL84 134 aa15.68■□□□□ 0.1
CLN3-207ENST00000395653 STAG3L3P0CL85 134 aa15.68■□□□□ 0.1
CLN3-207ENST00000395653 CDKN1BP46527 198 aa15.68■□□□□ 0.1
CLN3-207ENST00000395653 ODF3Q96PU9 254 aa15.68■□□□□ 0.1
CLN3-207ENST00000395653 A0A0D9SG52 128 aa15.67■□□□□ 0.1
CLN3-207ENST00000395653 RANP62826 216 aaKnown RBP15.67■□□□□ 0.1
CLN3-207ENST00000395653 BAP18Q8IXM2 172 aa15.67■□□□□ 0.1
CLN3-207ENST00000395653 C11orf45Q8TAV5 145 aa15.67■□□□□ 0.1
CLN3-207ENST00000395653 RAB24Q969Q5 203 aa15.67■□□□□ 0.1
CLN3-207ENST00000395653 HMGB3O15347 200 aaKnown RBP15.66■□□□□ 0.1
CLN3-207ENST00000395653 TSPOP30536 169 aa15.66■□□□□ 0.1
CLN3-207ENST00000395653 TCTE3Q8IZS6 198 aa15.66■□□□□ 0.1
CLN3-207ENST00000395653 TMEM208Q9BTX3 173 aa15.66■□□□□ 0.1
CLN3-207ENST00000395653 ACTR3CQ9C0K3 210 aaPredicted RBP15.66■□□□□ 0.1
CLN3-207ENST00000395653 Q9H3A6 140 aa15.66■□□□□ 0.1
CLN3-207ENST00000395653 TRAV12-2A0A075B6T6 113 aa15.65■□□□□ 0.1
CLN3-207ENST00000395653 ARL14EPLP0DKL9 152 aa15.65■□□□□ 0.1
CLN3-207ENST00000395653 KMT2CQ8NEZ4 4911 aaKnown RBP15.64■□□□□ 0.09
CLN3-207ENST00000395653 TMEM189A5PLL7 270 aa15.64■□□□□ 0.09
CLN3-207ENST00000395653 CXorf65A6NEN9 183 aa15.64■□□□□ 0.09
CLN3-207ENST00000395653 BCL2L11O43521 198 aa15.64■□□□□ 0.09
CLN3-207ENST00000395653 HBE1P02100 147 aa15.64■□□□□ 0.09
CLN3-207ENST00000395653 CT45A10P0DMU9 189 aa15.64■□□□□ 0.09
CLN3-207ENST00000395653 PMS2P11Q13670 270 aa15.64■□□□□ 0.09
CLN3-207ENST00000395653 LINC00477Q96M19 166 aa15.64■□□□□ 0.09
CLN3-207ENST00000395653 KANTRA0A1W2PQU2 76 aa15.63■□□□□ 0.09
CLN3-207ENST00000395653 LEPP41159 167 aa15.63■□□□□ 0.09
CLN3-207ENST00000395653 CSN1S1P47710 185 aa15.63■□□□□ 0.09
CLN3-207ENST00000395653 RRN3P1Q2M238 152 aa15.63■□□□□ 0.09
CLN3-207ENST00000395653 C9orf47Q6ZRZ4 202 aa15.63■□□□□ 0.09
CLN3-207ENST00000395653 OTORQ9NRC9 128 aa15.63■□□□□ 0.09
CLN3-207ENST00000395653 NANOS2P60321 138 aaKnown RBP15.62■□□□□ 0.09
CLN3-207ENST00000395653 AKR1C8PQ5T2L2 129 aa15.62■□□□□ 0.09
CLN3-207ENST00000395653 TMEM256Q8N2U0 113 aa15.62■□□□□ 0.09
CLN3-207ENST00000395653 RXFP4Q8TDU9 374 aa15.62■□□□□ 0.09
CLN3-207ENST00000395653 C20orf144Q9BQM9 153 aa15.62■□□□□ 0.09
CLN3-207ENST00000395653 AGPAT4-IT1Q9H0P7 198 aa15.62■□□□□ 0.09
CLN3-207ENST00000395653 IGKV2-40A0A087WW87 121 aaPredicted RBP15.61■□□□□ 0.09
CLN3-207ENST00000395653 IGKV2D-40P01614 121 aaPredicted RBP15.61■□□□□ 0.09
CLN3-207ENST00000395653 ERCC8Q13216 396 aa15.61■□□□□ 0.09
CLN3-207ENST00000395653 FAM74A1Q5RGS3 127 aa15.61■□□□□ 0.09
CLN3-207ENST00000395653 SUN5Q8TC36 379 aa15.61■□□□□ 0.09
CLN3-207ENST00000395653 TENM2Q9NT68 2774 aa15.61■□□□□ 0.09
CLN3-207ENST00000395653 CTXND1A0A1B0GTU2 59 aa15.6■□□□□ 0.09
CLN3-207ENST00000395653 RBAKDNA6NC62 111 aa15.6■□□□□ 0.09
CLN3-207ENST00000395653 NUPR2A6NF83 97 aa15.6■□□□□ 0.09
CLN3-207ENST00000395653 CXorf1O96002 111 aa15.6■□□□□ 0.09
CLN3-207ENST00000395653 SLC25A5P05141 298 aaKnown RBP15.6■□□□□ 0.09
CLN3-207ENST00000395653 GCHFRP30047 84 aa15.6■□□□□ 0.09
CLN3-207ENST00000395653 TMEM78Q5T7P6 136 aa15.6■□□□□ 0.09
CLN3-207ENST00000395653 GFI1BQ5VTD9 330 aa15.6■□□□□ 0.09
CLN3-207ENST00000395653 SSX7Q7RTT5 188 aa15.6■□□□□ 0.09
CLN3-207ENST00000395653 ARL6IP6Q8N6S5 226 aa15.6■□□□□ 0.09
CLN3-207ENST00000395653 FAM19A4Q96LR4 140 aa15.6■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms