RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 CSN3P07498 182 aa14.05□□□□□ -0.16
CLN3-206ENST00000360019 TRRAPQ9Y4A5 3859 aa14.05□□□□□ -0.16
CLN3-206ENST00000360019 C9JCJ5 164 aa14.04□□□□□ -0.16
CLN3-206ENST00000360019 M0R036 132 aa14.04□□□□□ -0.16
CLN3-206ENST00000360019 CNN1P51911 297 aaKnown RBP14.04□□□□□ -0.16
CLN3-206ENST00000360019 GOLT1AQ6ZVE7 132 aa14.04□□□□□ -0.16
CLN3-206ENST00000360019 C16orf92Q96LL3 132 aa14.04□□□□□ -0.16
CLN3-206ENST00000360019 SGK494Q96LW2 274 aa14.04□□□□□ -0.16
CLN3-206ENST00000360019 IGF2BP2-AS1Q96M15 143 aa14.04□□□□□ -0.16
CLN3-206ENST00000360019 KLF12Q9Y4X4 402 aa14.04□□□□□ -0.16
CLN3-206ENST00000360019 ZNF705FA8MVS1 300 aaPredicted RBP14.04□□□□□ -0.16
CLN3-206ENST00000360019 DIRC3C9JPN6 131 aa14.04□□□□□ -0.16
CLN3-206ENST00000360019 M0QZ24 198 aa14.04□□□□□ -0.16
CLN3-206ENST00000360019 RPL23P62829 140 aaKnown RBP14.04□□□□□ -0.16
CLN3-206ENST00000360019 CENPWQ5EE01 88 aa14.04□□□□□ -0.16
CLN3-206ENST00000360019 TRAV8-1A0A0A6YYK1 113 aa14.03□□□□□ -0.16
CLN3-206ENST00000360019 PNRC1Q12796 327 aaPredicted RBP14.03□□□□□ -0.16
CLN3-206ENST00000360019 TMEM183BQ1AE95 376 aa14.03□□□□□ -0.16
CLN3-206ENST00000360019 DCANP1Q8TF63 244 aa14.03□□□□□ -0.16
CLN3-206ENST00000360019 CITED1Q99966 193 aa14.03□□□□□ -0.16
CLN3-206ENST00000360019 AURKAIP1Q9NWT8 199 aaPredicted RBP14.03□□□□□ -0.16
CLN3-206ENST00000360019 VWFP04275 2813 aa14.03□□□□□ -0.16
CLN3-206ENST00000360019 OVOL1O14753 267 aa14.02□□□□□ -0.16
CLN3-206ENST00000360019 TAS2R60P59551 318 aa14.02□□□□□ -0.16
CLN3-206ENST00000360019 ADIRFQ15847 76 aa14.02□□□□□ -0.16
CLN3-206ENST00000360019 LCN12Q6JVE5 192 aa14.02□□□□□ -0.16
CLN3-206ENST00000360019 LINC01551Q86U37 167 aa14.02□□□□□ -0.16
CLN3-206ENST00000360019 GBGT1Q8N5D6 347 aa14.02□□□□□ -0.16
CLN3-206ENST00000360019 IGLV2-11P01706 119 aa14.01□□□□□ -0.17
CLN3-206ENST00000360019 CSN1S1P47710 185 aa14.01□□□□□ -0.17
CLN3-206ENST00000360019 GNG4P50150 75 aa14.01□□□□□ -0.17
CLN3-206ENST00000360019 ARL6IP6Q8N6S5 226 aa14.01□□□□□ -0.17
CLN3-206ENST00000360019 OCC1Q8TAD7 63 aa14.01□□□□□ -0.17
CLN3-206ENST00000360019 C20orf173Q96LM9 149 aa14.01□□□□□ -0.17
CLN3-206ENST00000360019 MS4A6AQ9H2W1 248 aa14.01□□□□□ -0.17
CLN3-206ENST00000360019 C7orf77A4D0Y5 90 aa14.01□□□□□ -0.17
CLN3-206ENST00000360019 PRAC2D3DTV9 90 aa14.01□□□□□ -0.17
CLN3-206ENST00000360019 IGLV2-8P01709 118 aa14.01□□□□□ -0.17
CLN3-206ENST00000360019 UBE2G1P62253 170 aa14.01□□□□□ -0.17
CLN3-206ENST00000360019 FMC1Q96HJ9 113 aa14.01□□□□□ -0.17
CLN3-206ENST00000360019 PRELID1Q9Y255 219 aa14.01□□□□□ -0.17
CLN3-206ENST00000360019 IGKV2-40A0A087WW87 121 aaPredicted RBP14□□□□□ -0.17
CLN3-206ENST00000360019 K7EN84 100 aa14□□□□□ -0.17
CLN3-206ENST00000360019 IGKV2D-40P01614 121 aaPredicted RBP14□□□□□ -0.17
CLN3-206ENST00000360019 PSG3Q16557 428 aa14□□□□□ -0.17
CLN3-206ENST00000360019 MRPL53Q96EL3 112 aaKnown RBP14□□□□□ -0.17
CLN3-206ENST00000360019 WFDC3Q8IUB2 231 aa13.99□□□□□ -0.17
CLN3-206ENST00000360019 TMEM75Q8N9X5 138 aa13.99□□□□□ -0.17
CLN3-206ENST00000360019 NHLRC2Q8NBF2 726 aa13.99□□□□□ -0.17
CLN3-206ENST00000360019 CLEC5AQ9NY25 188 aa13.99□□□□□ -0.17
CLN3-206ENST00000360019 SERTM2A0A1B0GWG4 89 aa13.99□□□□□ -0.17
CLN3-206ENST00000360019 TFPI2P48307 235 aa13.99□□□□□ -0.17
CLN3-206ENST00000360019 RHEBQ15382 184 aa13.99□□□□□ -0.17
CLN3-206ENST00000360019 Q86TA4 180 aa13.99□□□□□ -0.17
CLN3-206ENST00000360019 BAGE2Q86Y30 109 aa13.99□□□□□ -0.17
CLN3-206ENST00000360019 RPS10P5Q9NQ39 176 aa13.99□□□□□ -0.17
CLN3-206ENST00000360019 LY96Q9Y6Y9 160 aa13.99□□□□□ -0.17
CLN3-206ENST00000360019 K7EQM0 130 aa13.98□□□□□ -0.17
CLN3-206ENST00000360019 LTAP01374 205 aa13.98□□□□□ -0.17
CLN3-206ENST00000360019 S100A9P06702 114 aaKnown RBP13.98□□□□□ -0.17
CLN3-206ENST00000360019 DEFB114Q30KQ6 69 aa13.98□□□□□ -0.17
CLN3-206ENST00000360019 TMEM61Q8N0U2 210 aa13.98□□□□□ -0.17
CLN3-206ENST00000360019 FAM24BQ8N5W8 94 aa13.98□□□□□ -0.17
CLN3-206ENST00000360019 DYNLRB2Q8TF09 96 aa13.98□□□□□ -0.17
CLN3-206ENST00000360019 SIGLEC8Q9NYZ4 499 aa13.98□□□□□ -0.17
CLN3-206ENST00000360019 FLI1Q01543 452 aaPredicted RBP13.97□□□□□ -0.17
CLN3-206ENST00000360019 PRNTQ86SH4 94 aa13.97□□□□□ -0.17
CLN3-206ENST00000360019 ISOC2Q96AB3 205 aa13.97□□□□□ -0.17
CLN3-206ENST00000360019 ASCL2Q99929 193 aa13.97□□□□□ -0.17
CLN3-206ENST00000360019 VGLL1Q99990 258 aa13.97□□□□□ -0.17
CLN3-206ENST00000360019 PSG8Q9UQ74 426 aa13.97□□□□□ -0.17
CLN3-206ENST00000360019 TRBV6-1A0A0K0K1D8 114 aa13.97□□□□□ -0.17
CLN3-206ENST00000360019 B4DEV8 164 aa13.97□□□□□ -0.17
CLN3-206ENST00000360019 K7EQG2 157 aa13.97□□□□□ -0.17
CLN3-206ENST00000360019 DNASE2O00115 360 aaPredicted RBP13.97□□□□□ -0.17
CLN3-206ENST00000360019 SAMD13Q5VXD3 122 aa13.97□□□□□ -0.17
CLN3-206ENST00000360019 CMYA5Q8N3K9 4069 aa13.96□□□□□ -0.17
CLN3-206ENST00000360019 PF4P02776 101 aa13.96□□□□□ -0.17
CLN3-206ENST00000360019 DEFB1P60022 68 aa13.96□□□□□ -0.17
CLN3-206ENST00000360019 OR5I1Q13606 314 aa13.96□□□□□ -0.17
CLN3-206ENST00000360019 CD300EQ496F6 205 aaPredicted RBP13.96□□□□□ -0.17
CLN3-206ENST00000360019 LINC00482Q8N8I6 264 aa13.96□□□□□ -0.17
CLN3-206ENST00000360019 ZNF738Q8NE65 137 aa13.96□□□□□ -0.17
CLN3-206ENST00000360019 MLST8Q9BVC4 326 aa13.96□□□□□ -0.17
CLN3-206ENST00000360019 TSPAN4O14817 238 aa13.95□□□□□ -0.18
CLN3-206ENST00000360019 RNF212Q495C1 297 aa13.95□□□□□ -0.18
CLN3-206ENST00000360019 RBPMS2Q6ZRY4 209 aaKnown RBP13.95□□□□□ -0.18
CLN3-206ENST00000360019 RBAKDNA6NC62 111 aa13.94□□□□□ -0.18
CLN3-206ENST00000360019 MGST1P10620 155 aaKnown RBP13.94□□□□□ -0.18
CLN3-206ENST00000360019 ID1P41134 155 aa13.94□□□□□ -0.18
CLN3-206ENST00000360019 ERCC8Q13216 396 aa13.94□□□□□ -0.18
CLN3-206ENST00000360019 TMEM88Q6PEY1 159 aa13.94□□□□□ -0.18
CLN3-206ENST00000360019 CBLN2Q8IUK8 224 aa13.94□□□□□ -0.18
CLN3-206ENST00000360019 ANK2Q01484 3957 aa13.94□□□□□ -0.18
CLN3-206ENST00000360019 A0A087WWC5 75 aa13.94□□□□□ -0.18
CLN3-206ENST00000360019 GCGP01275 180 aa13.94□□□□□ -0.18
CLN3-206ENST00000360019 ZNF688P0C7X2 276 aa13.94□□□□□ -0.18
CLN3-206ENST00000360019 PAFAH1B2P68402 229 aa13.94□□□□□ -0.18
CLN3-206ENST00000360019 BTN1A1Q13410 526 aa13.94□□□□□ -0.18
CLN3-206ENST00000360019 Q8TAT8 98 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms