RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 PAGE4O60829 102 aa7□□□□□ -1.29
USP4-202ENST00000351842 HOXA5P20719 270 aa7□□□□□ -1.29
USP4-202ENST00000351842 SERF2P84101 59 aa7□□□□□ -1.29
USP4-202ENST00000351842 CD300EQ496F6 205 aaPredicted RBP7□□□□□ -1.29
USP4-202ENST00000351842 TMEM61Q8N0U2 210 aa7□□□□□ -1.29
USP4-202ENST00000351842 OR4F17Q8NGA8 305 aa7□□□□□ -1.29
USP4-202ENST00000351842 OR4F4Q96R69 305 aa7□□□□□ -1.29
USP4-202ENST00000351842 TXN2Q99757 166 aa7□□□□□ -1.29
USP4-202ENST00000351842 RARRES2Q99969 163 aa7□□□□□ -1.29
USP4-202ENST00000351842 NDUFAF3Q9BU61 184 aa7□□□□□ -1.29
USP4-202ENST00000351842 WFDC10AQ9H1F0 79 aa7□□□□□ -1.29
USP4-202ENST00000351842 AURKAIP1Q9NWT8 199 aaPredicted RBP7□□□□□ -1.29
USP4-202ENST00000351842 SLC17A3O00476 420 aa6.99□□□□□ -1.29
USP4-202ENST00000351842 HBE1P02100 147 aa6.99□□□□□ -1.29
USP4-202ENST00000351842 C8orf88P0DMB2 117 aa6.99□□□□□ -1.29
USP4-202ENST00000351842 GNG5P63218 68 aa6.99□□□□□ -1.29
USP4-202ENST00000351842 ZNF674Q2M3X9 581 aa6.99□□□□□ -1.29
USP4-202ENST00000351842 NDUFA11Q86Y39 141 aa6.99□□□□□ -1.29
USP4-202ENST00000351842 CITED1Q99966 193 aa6.99□□□□□ -1.29
USP4-202ENST00000351842 B4DEV8 164 aa6.99□□□□□ -1.29
USP4-202ENST00000351842 F6UB75 175 aa6.99□□□□□ -1.29
USP4-202ENST00000351842 AKR1C3P42330 323 aa6.99□□□□□ -1.29
USP4-202ENST00000351842 SUMO1P63165 101 aaKnown RBP6.99□□□□□ -1.29
USP4-202ENST00000351842 C16orf92Q96LL3 132 aa6.99□□□□□ -1.29
USP4-202ENST00000351842 TIMM9Q9Y5J7 89 aa6.99□□□□□ -1.29
USP4-202ENST00000351842 ELOA3CA0A087WX78 387 aaPredicted RBP6.99□□□□□ -1.29
USP4-202ENST00000351842 LOC102723971A0A1B0GUV8 181 aa6.99□□□□□ -1.29
USP4-202ENST00000351842 GAGE1Q13065 139 aa6.99□□□□□ -1.29
USP4-202ENST00000351842 SOHLH1Q5JUK2 328 aa6.99□□□□□ -1.29
USP4-202ENST00000351842 SIGLEC15Q6ZMC9 328 aa6.99□□□□□ -1.29
USP4-202ENST00000351842 SLC25A2Q9BXI2 301 aa6.99□□□□□ -1.29
USP4-202ENST00000351842 TECRQ9NZ01 308 aaKnown RBP6.99□□□□□ -1.29
USP4-202ENST00000351842 UFC1Q9Y3C8 167 aa6.99□□□□□ -1.29
USP4-202ENST00000351842 IGHV7-4-1A0A0J9YVY3 117 aa6.98□□□□□ -1.29
USP4-202ENST00000351842 CTXND1A0A1B0GTU2 59 aa6.98□□□□□ -1.29
USP4-202ENST00000351842 A8MWP6 167 aa6.98□□□□□ -1.29
USP4-202ENST00000351842 BUB3O43684 328 aa6.98□□□□□ -1.29
USP4-202ENST00000351842 ATP5G3P48201 142 aa6.98□□□□□ -1.29
USP4-202ENST00000351842 KLF5Q13887 457 aaPredicted RBP6.98□□□□□ -1.29
USP4-202ENST00000351842 DNLZQ5SXM8 178 aa6.98□□□□□ -1.29
USP4-202ENST00000351842 BPIFA4PQ86YQ2 179 aa6.98□□□□□ -1.29
USP4-202ENST00000351842 MYOZ3Q8TDC0 251 aa6.98□□□□□ -1.29
USP4-202ENST00000351842 NACAE9PAV3 2078 aa6.98□□□□□ -1.29
USP4-202ENST00000351842 CHEK1O14757 476 aa6.98□□□□□ -1.29
USP4-202ENST00000351842 NBEAP1P0C6P0 100 aa6.98□□□□□ -1.29
USP4-202ENST00000351842 TAS2R45P59539 299 aa6.98□□□□□ -1.29
USP4-202ENST00000351842 APRG1Q8IVJ8 170 aa6.98□□□□□ -1.29
USP4-202ENST00000351842 WIPF2Q8TF74 440 aaPredicted RBP6.98□□□□□ -1.29
USP4-202ENST00000351842 SHANK2-AS3Q9BTD1 123 aa6.98□□□□□ -1.29
USP4-202ENST00000351842 PEMTQ9UBM1 199 aa6.98□□□□□ -1.29
USP4-202ENST00000351842 SMPXQ9UHP9 88 aa6.98□□□□□ -1.29
USP4-202ENST00000351842 TRAV34A0A0B4J273 112 aa6.97□□□□□ -1.29
USP4-202ENST00000351842 WI2-2373I1.2A0A1W2PRP0 233 aa6.97□□□□□ -1.29
USP4-202ENST00000351842 PHOX2AO14813 284 aa6.97□□□□□ -1.29
USP4-202ENST00000351842 GCHFRP30047 84 aa6.97□□□□□ -1.29
USP4-202ENST00000351842 PSMG4Q5JS54 123 aa6.97□□□□□ -1.29
USP4-202ENST00000351842 ADAMTSL5Q6ZMM2 481 aa6.97□□□□□ -1.29
USP4-202ENST00000351842 FAM24BQ8N5W8 94 aa6.97□□□□□ -1.29
USP4-202ENST00000351842 NHLRC2Q8NBF2 726 aa6.97□□□□□ -1.29
USP4-202ENST00000351842 ZNF414Q96IQ9 312 aa6.97□□□□□ -1.29
USP4-202ENST00000351842 LINC00479Q96M42 142 aa6.97□□□□□ -1.29
USP4-202ENST00000351842 SNHG12Q9BXW3 62 aa6.97□□□□□ -1.29
USP4-202ENST00000351842 TRAV8-1A0A0A6YYK1 113 aa6.97□□□□□ -1.29
USP4-202ENST00000351842 NDUFA6P56556 154 aa6.97□□□□□ -1.29
USP4-202ENST00000351842 ELOBQ15370 118 aa6.97□□□□□ -1.29
USP4-202ENST00000351842 GPHB5Q86YW7 130 aa6.97□□□□□ -1.29
USP4-202ENST00000351842 RNF152Q8N8N0 203 aa6.97□□□□□ -1.29
USP4-202ENST00000351842 OR4B1Q8NGF8 309 aa6.97□□□□□ -1.29
USP4-202ENST00000351842 RNASE8Q8TDE3 154 aaKnown RBP6.97□□□□□ -1.29
USP4-202ENST00000351842 ISOC2Q96AB3 205 aa6.97□□□□□ -1.29
USP4-202ENST00000351842 ZNF503Q96F45 646 aa6.97□□□□□ -1.29
USP4-202ENST00000351842 GRAMD2BQ96HH9 432 aa6.97□□□□□ -1.29
USP4-202ENST00000351842 ZNF586Q9NXT0 402 aa6.97□□□□□ -1.29
USP4-202ENST00000351842 CLEC5AQ9NY25 188 aa6.97□□□□□ -1.29
USP4-202ENST00000351842 MRPL27Q9P0M9 148 aaKnown RBP6.97□□□□□ -1.29
USP4-202ENST00000351842 TGP01266 2768 aa6.97□□□□□ -1.29
USP4-202ENST00000351842 PGPA6NDG6 321 aa6.97□□□□□ -1.29
USP4-202ENST00000351842 FNDC10F2Z333 226 aa6.97□□□□□ -1.29
USP4-202ENST00000351842 GALR1P47211 349 aa6.97□□□□□ -1.29
USP4-202ENST00000351842 PNRC1Q12796 327 aaPredicted RBP6.97□□□□□ -1.29
USP4-202ENST00000351842 FAM90A2PQ658T7 463 aa6.97□□□□□ -1.29
USP4-202ENST00000351842 RPUSD4Q96CM3 377 aaKnown RBP6.97□□□□□ -1.29
USP4-202ENST00000351842 TVP23CQ96ET8 276 aa6.97□□□□□ -1.29
USP4-202ENST00000351842 H3BRN7 92 aa6.96□□□□□ -1.29
USP4-202ENST00000351842 SLC25A5P05141 298 aaKnown RBP6.96□□□□□ -1.29
USP4-202ENST00000351842 FXYD7P58549 80 aa6.96□□□□□ -1.29
USP4-202ENST00000351842 CD81P60033 236 aa6.96□□□□□ -1.29
USP4-202ENST00000351842 SHISA2Q6UWI4 295 aa6.96□□□□□ -1.29
USP4-202ENST00000351842 FAM167A-AS1Q96KT0 104 aa6.96□□□□□ -1.29
USP4-202ENST00000351842 A0A1W2PPQ1 181 aa6.96□□□□□ -1.3
USP4-202ENST00000351842 A0A1W2PS18 150 aa6.96□□□□□ -1.3
USP4-202ENST00000351842 M0R036 132 aa6.96□□□□□ -1.3
USP4-202ENST00000351842 RPL7P18124 248 aaKnown RBP6.96□□□□□ -1.3
USP4-202ENST00000351842 S100A7P31151 101 aa6.96□□□□□ -1.3
USP4-202ENST00000351842 ZNF738Q8NE65 137 aa6.96□□□□□ -1.3
USP4-202ENST00000351842 PRR25Q96S07 402 aa6.96□□□□□ -1.3
USP4-202ENST00000351842 YTHDF2Q9Y5A9 579 aaKnown RBP6.96□□□□□ -1.3
USP4-202ENST00000351842 CXorf1O96002 111 aa6.95□□□□□ -1.3
USP4-202ENST00000351842 CD7P09564 240 aa6.95□□□□□ -1.3
USP4-202ENST00000351842 HTN1P15515 57 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 97.4 ms