RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 OR10C1Q96KK4 312 aa6.59□□□□□ -1.35
HMGB1-203ENST00000341423 TBX6O95947 436 aaPredicted RBP6.59□□□□□ -1.35
HMGB1-203ENST00000341423 IGKV1-16P04430 117 aa6.59□□□□□ -1.35
HMGB1-203ENST00000341423 PRR20EP86478 221 aa6.59□□□□□ -1.35
HMGB1-203ENST00000341423 PRR20CP86479 221 aa6.59□□□□□ -1.35
HMGB1-203ENST00000341423 PRR20DP86480 221 aa6.59□□□□□ -1.35
HMGB1-203ENST00000341423 PRR20BP86481 221 aa6.59□□□□□ -1.35
HMGB1-203ENST00000341423 PRR20AP86496 221 aa6.59□□□□□ -1.35
HMGB1-203ENST00000341423 ZNRF2Q8NHG8 242 aa6.59□□□□□ -1.35
HMGB1-203ENST00000341423 PRSS29PA6NIE9 313 aa6.59□□□□□ -1.35
HMGB1-203ENST00000341423 IGKV1-5P01602 117 aa6.59□□□□□ -1.35
HMGB1-203ENST00000341423 MBPP02686 304 aaPredicted RBP6.59□□□□□ -1.35
HMGB1-203ENST00000341423 APOHP02749 345 aaPredicted RBP6.59□□□□□ -1.35
HMGB1-203ENST00000341423 ZNF880Q6PDB4 577 aa6.59□□□□□ -1.35
HMGB1-203ENST00000341423 KLK9Q9UKQ9 250 aa6.59□□□□□ -1.35
HMGB1-203ENST00000341423 PSME4Q14997 1843 aa6.59□□□□□ -1.35
HMGB1-203ENST00000341423 UBE2D3P61077 147 aa6.59□□□□□ -1.36
HMGB1-203ENST00000341423 TMEM170BQ5T4T1 132 aa6.59□□□□□ -1.36
HMGB1-203ENST00000341423 FAAP20Q6NZ36 180 aa6.59□□□□□ -1.36
HMGB1-203ENST00000341423 KLHDC3Q9BQ90 382 aa6.59□□□□□ -1.36
HMGB1-203ENST00000341423 IL36BQ9NZH7 164 aa6.59□□□□□ -1.36
HMGB1-203ENST00000341423 NOTCH1P46531 2555 aa6.58□□□□□ -1.36
HMGB1-203ENST00000341423 A0A087WZ39 114 aa6.58□□□□□ -1.36
HMGB1-203ENST00000341423 TRAV13-1A0A0B4J241 112 aa6.58□□□□□ -1.36
HMGB1-203ENST00000341423 TMEM190Q8WZ59 177 aa6.58□□□□□ -1.36
HMGB1-203ENST00000341423 FXYD1O00168 92 aa6.58□□□□□ -1.36
HMGB1-203ENST00000341423 PDE6DO43924 150 aa6.58□□□□□ -1.36
HMGB1-203ENST00000341423 SIX6O95475 246 aa6.58□□□□□ -1.36
HMGB1-203ENST00000341423 CCBE1Q6UXH8 406 aaPredicted RBP6.58□□□□□ -1.36
HMGB1-203ENST00000341423 C9orf85Q96MD7 179 aa6.58□□□□□ -1.36
HMGB1-203ENST00000341423 MS4A6AQ9H2W1 248 aa6.58□□□□□ -1.36
HMGB1-203ENST00000341423 TOMM40O96008 361 aa6.58□□□□□ -1.36
HMGB1-203ENST00000341423 CD74P04233 296 aa6.58□□□□□ -1.36
HMGB1-203ENST00000341423 C1orf100Q5SVJ3 147 aa6.58□□□□□ -1.36
HMGB1-203ENST00000341423 FER1L6-AS1Q8NA97 138 aa6.58□□□□□ -1.36
HMGB1-203ENST00000341423 SMLR1H3BR10 107 aa6.58□□□□□ -1.36
HMGB1-203ENST00000341423 M0R2Z0 102 aa6.58□□□□□ -1.36
HMGB1-203ENST00000341423 ITGB1BP1O14713 200 aa6.58□□□□□ -1.36
HMGB1-203ENST00000341423 NDUFB6O95139 128 aa6.58□□□□□ -1.36
HMGB1-203ENST00000341423 TAL2Q16559 108 aa6.58□□□□□ -1.36
HMGB1-203ENST00000341423 FAM222AQ5U5X8 452 aa6.58□□□□□ -1.36
HMGB1-203ENST00000341423 PHYHIPLQ96FC7 376 aa6.58□□□□□ -1.36
HMGB1-203ENST00000341423 H3BVH4 76 aa6.57□□□□□ -1.36
HMGB1-203ENST00000341423 IGKV1-39P01597 117 aa6.57□□□□□ -1.36
HMGB1-203ENST00000341423 IGKV1D-39P04432 117 aa6.57□□□□□ -1.36
HMGB1-203ENST00000341423 RPL24P83731 157 aaKnown RBP6.57□□□□□ -1.36
HMGB1-203ENST00000341423 HHLA3Q9XRX5 114 aa6.57□□□□□ -1.36
HMGB1-203ENST00000341423 RBBP6Q7Z6E9 1792 aaKnown RBP6.57□□□□□ -1.36
HMGB1-203ENST00000341423 IGHG4P01861 327 aa6.57□□□□□ -1.36
HMGB1-203ENST00000341423 LAIR2Q6ISS4 152 aa6.57□□□□□ -1.36
HMGB1-203ENST00000341423 SLC25A34Q6PIV7 304 aa6.57□□□□□ -1.36
HMGB1-203ENST00000341423 Q9H3A6 140 aa6.57□□□□□ -1.36
HMGB1-203ENST00000341423 TRBV6-7A0A0A0MS04 114 aa6.57□□□□□ -1.36
HMGB1-203ENST00000341423 RSPO3Q9BXY4 272 aaPredicted RBP6.57□□□□□ -1.36
HMGB1-203ENST00000341423 U3KQE9 123 aa6.57□□□□□ -1.36
HMGB1-203ENST00000341423 CIDEAO60543 219 aa6.57□□□□□ -1.36
HMGB1-203ENST00000341423 APOC3P02656 99 aa6.57□□□□□ -1.36
HMGB1-203ENST00000341423 NANOS2P60321 138 aaKnown RBP6.57□□□□□ -1.36
HMGB1-203ENST00000341423 PLXNA4Q9HCM2 1894 aa6.57□□□□□ -1.36
HMGB1-203ENST00000341423 TMEM91Q6ZNR0 172 aa6.56□□□□□ -1.36
HMGB1-203ENST00000341423 OR10G8Q8NGN5 311 aa6.56□□□□□ -1.36
HMGB1-203ENST00000341423 Q8N976 141 aa6.56□□□□□ -1.36
HMGB1-203ENST00000341423 IMMP2LQ96T52 175 aa6.56□□□□□ -1.36
HMGB1-203ENST00000341423 FNDC4Q9H6D8 234 aaPredicted RBP6.56□□□□□ -1.36
HMGB1-203ENST00000341423 TRAV26-1A0A087WT03 109 aa6.56□□□□□ -1.36
HMGB1-203ENST00000341423 A0A087WWL8 130 aa6.56□□□□□ -1.36
HMGB1-203ENST00000341423 IGHV1-24A0A0C4DH33 117 aa6.56□□□□□ -1.36
HMGB1-203ENST00000341423 TMEM50AO95807 157 aa6.56□□□□□ -1.36
HMGB1-203ENST00000341423 TRAV12-2A0A075B6T6 113 aa6.56□□□□□ -1.36
HMGB1-203ENST00000341423 YPEL3P61236 119 aaPredicted RBP6.56□□□□□ -1.36
HMGB1-203ENST00000341423 YLPM1P49750 1951 aaKnown RBP6.56□□□□□ -1.36
HMGB1-203ENST00000341423 ETDCA0A1B0GVM5 59 aa6.56□□□□□ -1.36
HMGB1-203ENST00000341423 C5orf52A6NGY3 159 aa6.56□□□□□ -1.36
HMGB1-203ENST00000341423 RPS10P46783 165 aaKnown RBP6.56□□□□□ -1.36
HMGB1-203ENST00000341423 BSXQ3C1V8 233 aa6.56□□□□□ -1.36
HMGB1-203ENST00000341423 SLC51BQ86UW2 128 aa6.56□□□□□ -1.36
HMGB1-203ENST00000341423 RASL10AQ92737 203 aa6.56□□□□□ -1.36
HMGB1-203ENST00000341423 MRPL36Q9P0J6 103 aaKnown RBP6.56□□□□□ -1.36
HMGB1-203ENST00000341423 FAM90A9PA6NNJ1 464 aa6.55□□□□□ -1.36
HMGB1-203ENST00000341423 GIPP09681 153 aaPredicted RBP6.55□□□□□ -1.36
HMGB1-203ENST00000341423 P2RY4P51582 365 aa6.55□□□□□ -1.36
HMGB1-203ENST00000341423 SERF2P84101 59 aa6.55□□□□□ -1.36
HMGB1-203ENST00000341423 DHRS11Q6UWP2 260 aa6.55□□□□□ -1.36
HMGB1-203ENST00000341423 PPP1R1CQ8WVI7 109 aa6.55□□□□□ -1.36
HMGB1-203ENST00000341423 RAB37Q96AX2 223 aa6.55□□□□□ -1.36
HMGB1-203ENST00000341423 C16orf95Q9H693 158 aa6.55□□□□□ -1.36
HMGB1-203ENST00000341423 ZNF319Q9P2F9 582 aa6.55□□□□□ -1.36
HMGB1-203ENST00000341423 PAGE4O60829 102 aa6.55□□□□□ -1.36
HMGB1-203ENST00000341423 MPZP25189 248 aa6.55□□□□□ -1.36
HMGB1-203ENST00000341423 NANOS3P60323 173 aaKnown RBP6.55□□□□□ -1.36
HMGB1-203ENST00000341423 LBHQ53QV2 105 aaPredicted RBP6.55□□□□□ -1.36
HMGB1-203ENST00000341423 CLPSL2Q6UWE3 100 aa6.55□□□□□ -1.36
HMGB1-203ENST00000341423 MIXL1Q9H2W2 232 aa6.55□□□□□ -1.36
HMGB1-203ENST00000341423 K7EMT4 169 aa6.55□□□□□ -1.36
HMGB1-203ENST00000341423 HOXA5P20719 270 aa6.55□□□□□ -1.36
HMGB1-203ENST00000341423 TMEM241Q24JQ0 296 aa6.55□□□□□ -1.36
HMGB1-203ENST00000341423 C11orf71Q6IPW1 123 aa6.55□□□□□ -1.36
HMGB1-203ENST00000341423 CEMP1Q6PRD7 247 aaPredicted RBP6.55□□□□□ -1.36
HMGB1-203ENST00000341423 TRGV9Q99603 122 aa6.55□□□□□ -1.36
HMGB1-203ENST00000341423 MLST8Q9BVC4 326 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms