RNA–Protein interactions for RNA: ENST00000340477.9

SYNE4-202, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE4, Length 1,004 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-202ENST00000340477 PSMG3Q9BT73 122 aaPredicted RBP13.9□□□□□ -0.18
SYNE4-202ENST00000340477 TMEM189A5PLL7 270 aa13.89□□□□□ -0.19
SYNE4-202ENST00000340477 HBE1P02100 147 aa13.89□□□□□ -0.19
SYNE4-202ENST00000340477 MBP02144 154 aa13.89□□□□□ -0.19
SYNE4-202ENST00000340477 OR10J4P0C629 311 aa13.89□□□□□ -0.19
SYNE4-202ENST00000340477 RNF141Q8WVD5 230 aa13.89□□□□□ -0.19
SYNE4-202ENST00000340477 RFNGQ9Y644 331 aa13.89□□□□□ -0.19
SYNE4-202ENST00000340477 RNF222A6NCQ9 220 aa13.88□□□□□ -0.19
SYNE4-202ENST00000340477 ARPC5O15511 151 aa13.88□□□□□ -0.19
SYNE4-202ENST00000340477 FAM122CQ6P4D5 195 aa13.88□□□□□ -0.19
SYNE4-202ENST00000340477 OR10G4Q8NGN3 311 aa13.88□□□□□ -0.19
SYNE4-202ENST00000340477 OR10G9Q8NGN4 311 aa13.88□□□□□ -0.19
SYNE4-202ENST00000340477 OR10G7Q8NGN6 311 aa13.88□□□□□ -0.19
SYNE4-202ENST00000340477 OR2G3Q8NGZ4 309 aa13.88□□□□□ -0.19
SYNE4-202ENST00000340477 GNPNAT1Q96EK6 184 aaPredicted RBP13.88□□□□□ -0.19
SYNE4-202ENST00000340477 KLK5Q9Y337 293 aaPredicted RBP13.88□□□□□ -0.19
SYNE4-202ENST00000340477 NDUFB4O95168 129 aa13.87□□□□□ -0.19
SYNE4-202ENST00000340477 RBMY1A1P0DJD3 496 aaKnown RBP13.87□□□□□ -0.19
SYNE4-202ENST00000340477 RBMY1CP0DJD4 496 aa13.87□□□□□ -0.19
SYNE4-202ENST00000340477 ATP6V0CP27449 155 aa13.87□□□□□ -0.19
SYNE4-202ENST00000340477 CDKN1BP46527 198 aa13.87□□□□□ -0.19
SYNE4-202ENST00000340477 NANOS2P60321 138 aaKnown RBP13.87□□□□□ -0.19
SYNE4-202ENST00000340477 RAB2AP61019 212 aa13.87□□□□□ -0.19
SYNE4-202ENST00000340477 SERF2P84101 59 aa13.87□□□□□ -0.19
SYNE4-202ENST00000340477 RBMY1FQ15415 496 aaKnown RBP13.87□□□□□ -0.19
SYNE4-202ENST00000340477 RRN3P1Q2M238 152 aa13.87□□□□□ -0.19
SYNE4-202ENST00000340477 PQLC2Q6ZP29 291 aa13.87□□□□□ -0.19
SYNE4-202ENST00000340477 BAP18Q8IXM2 172 aa13.87□□□□□ -0.19
SYNE4-202ENST00000340477 FXYD5Q96DB9 178 aa13.87□□□□□ -0.19
SYNE4-202ENST00000340477 CSMD3Q7Z407 3707 aa13.87□□□□□ -0.19
SYNE4-202ENST00000340477 PRAC2D3DTV9 90 aa13.86□□□□□ -0.19
SYNE4-202ENST00000340477 TAAR5O14804 337 aa13.86□□□□□ -0.19
SYNE4-202ENST00000340477 JTBO76095 146 aa13.86□□□□□ -0.19
SYNE4-202ENST00000340477 PRB4P10163 310 aaPredicted RBP13.86□□□□□ -0.19
SYNE4-202ENST00000340477 LEPP41159 167 aa13.86□□□□□ -0.19
SYNE4-202ENST00000340477 CSN1S1P47710 185 aa13.86□□□□□ -0.19
SYNE4-202ENST00000340477 CDC34P49427 236 aaPredicted RBP13.86□□□□□ -0.19
SYNE4-202ENST00000340477 ICAM4Q14773 271 aa13.86□□□□□ -0.19
SYNE4-202ENST00000340477 TMEM256Q8N2U0 113 aa13.86□□□□□ -0.19
SYNE4-202ENST00000340477 EXOC3-AS1Q8N2X6 119 aa13.86□□□□□ -0.19
SYNE4-202ENST00000340477 TEX48A0A1B0GUV7 120 aa13.85□□□□□ -0.19
SYNE4-202ENST00000340477 NPIPB6E9PJ23 425 aa13.85□□□□□ -0.19
SYNE4-202ENST00000340477 M0R3E3 92 aa13.85□□□□□ -0.19
SYNE4-202ENST00000340477 RPL7L1Q6DKI1 246 aaKnown RBP13.85□□□□□ -0.19
SYNE4-202ENST00000340477 CEMP1Q6PRD7 247 aaPredicted RBP13.85□□□□□ -0.19
SYNE4-202ENST00000340477 C1orf158Q8N1D5 194 aa13.85□□□□□ -0.19
SYNE4-202ENST00000340477 LYPD1Q8N2G4 141 aa13.85□□□□□ -0.19
SYNE4-202ENST00000340477 PHLDA1Q8WV24 401 aaPredicted RBP13.85□□□□□ -0.19
SYNE4-202ENST00000340477 ODF3Q96PU9 254 aa13.85□□□□□ -0.19
SYNE4-202ENST00000340477 TRAV12-2A0A075B6T6 113 aa13.84□□□□□ -0.19
SYNE4-202ENST00000340477 LOC102723971A0A1B0GUV8 181 aa13.84□□□□□ -0.19
SYNE4-202ENST00000340477 EMP1P54849 157 aa13.84□□□□□ -0.19
SYNE4-202ENST00000340477 FAM74A1Q5RGS3 127 aa13.84□□□□□ -0.19
SYNE4-202ENST00000340477 RPP25LQ8N5L8 163 aaKnown RBP13.84□□□□□ -0.19
SYNE4-202ENST00000340477 PHYHIPLQ96FC7 376 aa13.84□□□□□ -0.19
SYNE4-202ENST00000340477 C11orf94C9JXX5 98 aa13.83□□□□□ -0.2
SYNE4-202ENST00000340477 G3V3Q6 166 aa13.83□□□□□ -0.2
SYNE4-202ENST00000340477 SMLR1H3BR10 107 aa13.83□□□□□ -0.2
SYNE4-202ENST00000340477 CRXO43186 299 aaPredicted RBP13.83□□□□□ -0.2
SYNE4-202ENST00000340477 RANP62826 216 aaKnown RBP13.83□□□□□ -0.2
SYNE4-202ENST00000340477 TMEM78Q5T7P6 136 aa13.83□□□□□ -0.2
SYNE4-202ENST00000340477 LINC01587Q99440 93 aa13.83□□□□□ -0.2
SYNE4-202ENST00000340477 C20orf144Q9BQM9 153 aa13.83□□□□□ -0.2
SYNE4-202ENST00000340477 TENM2Q9NT68 2774 aa13.82□□□□□ -0.2
SYNE4-202ENST00000340477 SPART-AS1P0CW21 52 aa13.82□□□□□ -0.2
SYNE4-202ENST00000340477 ZNF345Q14585 488 aa13.82□□□□□ -0.2
SYNE4-202ENST00000340477 LINC00477Q96M19 166 aa13.82□□□□□ -0.2
SYNE4-202ENST00000340477 ACTR3CQ9C0K3 210 aaPredicted RBP13.82□□□□□ -0.2
SYNE4-202ENST00000340477 SH3BGRL3Q9H299 93 aa13.82□□□□□ -0.2
SYNE4-202ENST00000340477 Q9H3A6 140 aa13.82□□□□□ -0.2
SYNE4-202ENST00000340477 STARD9Q9P2P6 4700 aa13.82□□□□□ -0.2
SYNE4-202ENST00000340477 CMTM2Q8TAZ6 248 aa13.81□□□□□ -0.2
SYNE4-202ENST00000340477 RXFP4Q8TDU9 374 aa13.81□□□□□ -0.2
SYNE4-202ENST00000340477 ZNF503Q96F45 646 aa13.81□□□□□ -0.2
SYNE4-202ENST00000340477 ARPC5LQ9BPX5 153 aa13.81□□□□□ -0.2
SYNE4-202ENST00000340477 H7BYZ3 331 aa13.8□□□□□ -0.2
SYNE4-202ENST00000340477 HMGB3O15347 200 aaKnown RBP13.8□□□□□ -0.2
SYNE4-202ENST00000340477 CT45A10P0DMU9 189 aa13.8□□□□□ -0.2
SYNE4-202ENST00000340477 AKR1C8PQ5T2L2 129 aa13.8□□□□□ -0.2
SYNE4-202ENST00000340477 OTORQ9NRC9 128 aa13.8□□□□□ -0.2
SYNE4-202ENST00000340477 IGKV2-40A0A087WW87 121 aaPredicted RBP13.79□□□□□ -0.2
SYNE4-202ENST00000340477 TRAV10A0A0B4J240 114 aa13.79□□□□□ -0.2
SYNE4-202ENST00000340477 HMSDA8MTL9 139 aa13.79□□□□□ -0.2
SYNE4-202ENST00000340477 J3KRW8 73 aa13.79□□□□□ -0.2
SYNE4-202ENST00000340477 EIF3GO75821 320 aaKnown RBP eCLIP13.79□□□□□ -0.2
SYNE4-202ENST00000340477 IGKV2D-40P01614 121 aaPredicted RBP13.79□□□□□ -0.2
SYNE4-202ENST00000340477 ARL14EPLP0DKL9 152 aa13.79□□□□□ -0.2
SYNE4-202ENST00000340477 TAS2R60P59551 318 aa13.79□□□□□ -0.2
SYNE4-202ENST00000340477 ERCC8Q13216 396 aa13.79□□□□□ -0.2
SYNE4-202ENST00000340477 C2CD4CQ8TF44 421 aa13.79□□□□□ -0.2
SYNE4-202ENST00000340477 RAB24Q969Q5 203 aa13.79□□□□□ -0.2
SYNE4-202ENST00000340477 NIPSNAP3BQ9BS92 247 aa13.79□□□□□ -0.2
SYNE4-202ENST00000340477 CELA1Q9UNI1 258 aa13.79□□□□□ -0.2
SYNE4-202ENST00000340477 YTHDF2Q9Y5A9 579 aaKnown RBP13.79□□□□□ -0.2
SYNE4-202ENST00000340477 A0A0D9SG52 128 aa13.78□□□□□ -0.2
SYNE4-202ENST00000340477 LCE6AA0A183 80 aa13.78□□□□□ -0.2
SYNE4-202ENST00000340477 KANTRA0A1W2PQU2 76 aa13.78□□□□□ -0.2
SYNE4-202ENST00000340477 ZNF705GA8MUZ8 300 aaPredicted RBP13.78□□□□□ -0.2
SYNE4-202ENST00000340477 SLC25A5P05141 298 aaKnown RBP13.78□□□□□ -0.2
SYNE4-202ENST00000340477 STAG3L2P0CL84 134 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 84.3 ms