RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 TMEM242Q9NWH2 141 aa9.88□□□□□ -0.83
PCF11-201ENST00000298281 WDR83OSQ9Y284 106 aa9.88□□□□□ -0.83
PCF11-201ENST00000298281 THSD7AQ9UPZ6 1657 aa9.88□□□□□ -0.83
PCF11-201ENST00000298281 GREB1LQ9C091 1923 aaPredicted RBP9.88□□□□□ -0.83
PCF11-201ENST00000298281 CD55P08174 381 aa9.88□□□□□ -0.83
PCF11-201ENST00000298281 MAPK1IP1LQ8NDC0 245 aa9.88□□□□□ -0.83
PCF11-201ENST00000298281 BRCA1P38398 1863 aaKnown RBP9.88□□□□□ -0.83
PCF11-201ENST00000298281 VWA8A3KMH1 1905 aa9.88□□□□□ -0.83
PCF11-201ENST00000298281 POU2AF1Q16633 256 aa9.88□□□□□ -0.83
PCF11-201ENST00000298281 LIME1Q9H400 295 aa9.88□□□□□ -0.83
PCF11-201ENST00000298281 NEUROG3Q9Y4Z2 214 aa9.88□□□□□ -0.83
PCF11-201ENST00000298281 KNCNA6PVL3 124 aa9.88□□□□□ -0.83
PCF11-201ENST00000298281 TRPT1Q86TN4 253 aaKnown RBP9.88□□□□□ -0.83
PCF11-201ENST00000298281 Q96MF0 132 aa9.87□□□□□ -0.83
PCF11-201ENST00000298281 DSCAMO60469 2012 aa9.87□□□□□ -0.83
PCF11-201ENST00000298281 RAMP3O60896 148 aa9.87□□□□□ -0.83
PCF11-201ENST00000298281 IGLV2-23P01705 113 aa9.87□□□□□ -0.83
PCF11-201ENST00000298281 LAIR2Q6ISS4 152 aa9.87□□□□□ -0.83
PCF11-201ENST00000298281 LRCOL1A6NCL2 159 aa9.87□□□□□ -0.83
PCF11-201ENST00000298281 PAX9P55771 341 aa9.87□□□□□ -0.83
PCF11-201ENST00000298281 AMBPP02760 352 aa9.87□□□□□ -0.83
PCF11-201ENST00000298281 EFNA4P52798 201 aa9.87□□□□□ -0.83
PCF11-201ENST00000298281 HEPN1Q6WQI6 88 aa9.87□□□□□ -0.83
PCF11-201ENST00000298281 C9orf47Q6ZRZ4 202 aa9.87□□□□□ -0.83
PCF11-201ENST00000298281 RPUSD1Q9UJJ7 312 aaKnown RBP9.87□□□□□ -0.83
PCF11-201ENST00000298281 MP68P56378 58 aa9.87□□□□□ -0.83
PCF11-201ENST00000298281 RNF223E7ERA6 249 aa9.87□□□□□ -0.83
PCF11-201ENST00000298281 USMG5Q96IX5 58 aa9.87□□□□□ -0.83
PCF11-201ENST00000298281 TNS1Q9HBL0 1735 aaKnown RBP9.87□□□□□ -0.83
PCF11-201ENST00000298281 GUSBP1Q15486 140 aa9.86□□□□□ -0.83
PCF11-201ENST00000298281 PCDH15Q96QU1 1955 aa9.86□□□□□ -0.83
PCF11-201ENST00000298281 IFITM1P13164 125 aa9.86□□□□□ -0.83
PCF11-201ENST00000298281 C9orf139Q6ZV77 190 aa9.86□□□□□ -0.83
PCF11-201ENST00000298281 SRRM5B3KS81 715 aa9.86□□□□□ -0.83
PCF11-201ENST00000298281 H0Y9J4 135 aa9.86□□□□□ -0.83
PCF11-201ENST00000298281 DEPPQ9NTK1 212 aa9.86□□□□□ -0.83
PCF11-201ENST00000298281 ZNF837Q96EG3 531 aaPredicted RBP9.86□□□□□ -0.83
PCF11-201ENST00000298281 IGHV1-18A0A0C4DH31 117 aa9.86□□□□□ -0.83
PCF11-201ENST00000298281 SPINK13Q1W4C9 94 aa9.86□□□□□ -0.83
PCF11-201ENST00000298281 RNF126Q9BV68 326 aa9.86□□□□□ -0.83
PCF11-201ENST00000298281 ZNF319Q9P2F9 582 aa9.86□□□□□ -0.83
PCF11-201ENST00000298281 IGKV1D-13A0A0B4J2D9 117 aa9.86□□□□□ -0.83
PCF11-201ENST00000298281 SHISA3A0PJX4 238 aa9.86□□□□□ -0.83
PCF11-201ENST00000298281 IGKV1-13P0DP09 117 aa9.86□□□□□ -0.83
PCF11-201ENST00000298281 UBE2E1P51965 193 aa9.86□□□□□ -0.83
PCF11-201ENST00000298281 SEM1Q6ZVN7 128 aa9.86□□□□□ -0.83
PCF11-201ENST00000298281 AGRNO00468 2067 aa9.86□□□□□ -0.83
PCF11-201ENST00000298281 ZFP36L1Q07352 338 aaKnown RBP9.85□□□□□ -0.83
PCF11-201ENST00000298281 TRGV9Q99603 122 aa9.85□□□□□ -0.83
PCF11-201ENST00000298281 IGHV3-38A0A0C4DH36 116 aa9.85□□□□□ -0.83
PCF11-201ENST00000298281 IGKV1-39P01597 117 aa9.85□□□□□ -0.83
PCF11-201ENST00000298281 IGKV1D-39P04432 117 aa9.85□□□□□ -0.83
PCF11-201ENST00000298281 XCL1P47992 114 aa9.85□□□□□ -0.83
PCF11-201ENST00000298281 TGFBR3LH3BV60 316 aa9.85□□□□□ -0.83
PCF11-201ENST00000298281 SMKR1H3BMG3 65 aa9.85□□□□□ -0.83
PCF11-201ENST00000298281 C15orf53Q8NAA6 179 aa9.85□□□□□ -0.83
PCF11-201ENST00000298281 FANCD2OSQ96PS1 177 aa9.85□□□□□ -0.83
PCF11-201ENST00000298281 IGHV1-46P01743 117 aa9.85□□□□□ -0.83
PCF11-201ENST00000298281 OR11H6Q8NGC7 330 aa9.85□□□□□ -0.83
PCF11-201ENST00000298281 M0R1W7 72 aa9.84□□□□□ -0.83
PCF11-201ENST00000298281 ACYP1P07311 99 aa9.84□□□□□ -0.83
PCF11-201ENST00000298281 LYZL1Q6UWQ5 148 aa9.84□□□□□ -0.83
PCF11-201ENST00000298281 LYPD1Q8N2G4 141 aa9.84□□□□□ -0.83
PCF11-201ENST00000298281 OCC1Q8TAD7 63 aa9.84□□□□□ -0.83
PCF11-201ENST00000298281 IGHV4OR15-8A0A075B7B6 117 aa9.84□□□□□ -0.83
PCF11-201ENST00000298281 A0A087WW49 117 aa9.84□□□□□ -0.83
PCF11-201ENST00000298281 hDV102S1A0JD36 115 aa9.84□□□□□ -0.83
PCF11-201ENST00000298281 IGHV2-26A0A0B4J1V2 119 aa9.84□□□□□ -0.83
PCF11-201ENST00000298281 SH2D1AO60880 128 aa9.84□□□□□ -0.83
PCF11-201ENST00000298281 ZNF672Q499Z4 452 aaPredicted RBP9.84□□□□□ -0.83
PCF11-201ENST00000298281 GPHB5Q86YW7 130 aa9.84□□□□□ -0.83
PCF11-201ENST00000298281 Q8TAT8 98 aa9.84□□□□□ -0.83
PCF11-201ENST00000298281 MCRIP2Q9BUT9 160 aaKnown RBP9.84□□□□□ -0.83
PCF11-201ENST00000298281 A0A1B0GWJ7 208 aa9.84□□□□□ -0.83
PCF11-201ENST00000298281 ADAMTSL5Q6ZMM2 481 aa9.84□□□□□ -0.83
PCF11-201ENST00000298281 SPTSSBQ8NFR3 76 aa9.84□□□□□ -0.83
PCF11-201ENST00000298281 TRAV1-1A0A0B4J248 108 aa9.84□□□□□ -0.83
PCF11-201ENST00000298281 PRR31Q5SQ13 230 aa9.84□□□□□ -0.83
PCF11-201ENST00000298281 COL11A2P13942 1736 aaPredicted RBP9.84□□□□□ -0.83
PCF11-201ENST00000298281 A0A0J9YY99 117 aa9.84□□□□□ -0.83
PCF11-201ENST00000298281 FAM223BA6NKX1 122 aa9.84□□□□□ -0.83
PCF11-201ENST00000298281 FAM223AQ8IWN6 122 aa9.84□□□□□ -0.83
PCF11-201ENST00000298281 TRAV13-2A0A0B4J235 113 aa9.83□□□□□ -0.84
PCF11-201ENST00000298281 A0A1B0GX51 115 aa9.83□□□□□ -0.84
PCF11-201ENST00000298281 HCFC1P51610 2035 aa9.83□□□□□ -0.84
PCF11-201ENST00000298281 SPACA3Q8IXA5 215 aa9.83□□□□□ -0.84
PCF11-201ENST00000298281 ANKRD29Q8N6D5 301 aa9.83□□□□□ -0.84
PCF11-201ENST00000298281 TM2D2Q9BX73 214 aa9.83□□□□□ -0.84
PCF11-201ENST00000298281 LINC01619G3V211 115 aa9.83□□□□□ -0.84
PCF11-201ENST00000298281 FAM104BQ5XKR9 115 aa9.83□□□□□ -0.84
PCF11-201ENST00000298281 TRBV24-1A0A075B6N3 115 aa9.83□□□□□ -0.84
PCF11-201ENST00000298281 SRSF8Q9BRL6 282 aaKnown RBP9.83□□□□□ -0.84
PCF11-201ENST00000298281 IGKV1-9A0A0C4DH69 117 aa9.83□□□□□ -0.84
PCF11-201ENST00000298281 IGLL5B9A064 214 aa9.83□□□□□ -0.84
PCF11-201ENST00000298281 A6NNC1 897 aa9.82□□□□□ -0.84
PCF11-201ENST00000298281 TFF1P04155 84 aa9.82□□□□□ -0.84
PCF11-201ENST00000298281 CCL18P55774 89 aa9.82□□□□□ -0.84
PCF11-201ENST00000298281 Q6ZQT7 251 aa9.82□□□□□ -0.84
PCF11-201ENST00000298281 KLK9Q9UKQ9 250 aa9.82□□□□□ -0.84
PCF11-201ENST00000298281 TRBV20-1A0A075B6N2 111 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms