RNA–Protein interactions for RNA: ENST00000284637.13

SH3RF1-201, Transcript of SH3 domain containing ring finger 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SH3RF1, Length 5,272 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-201ENST00000284637 IGKV1-39P01597 117 aa13.32□□□□□ -0.28
SH3RF1-201ENST00000284637 IGKV1D-39P04432 117 aa13.32□□□□□ -0.28
SH3RF1-201ENST00000284637 CT83Q5H943 113 aa13.32□□□□□ -0.28
SH3RF1-201ENST00000284637 MDS2Q8NDY4 140 aa13.32□□□□□ -0.28
SH3RF1-201ENST00000284637 B5MCH6 92 aa13.32□□□□□ -0.28
SH3RF1-201ENST00000284637 LGALS9BQ3B8N2 356 aa13.32□□□□□ -0.28
SH3RF1-201ENST00000284637 LGALS9CQ6DKI2 356 aa13.32□□□□□ -0.28
SH3RF1-201ENST00000284637 YLPM1P49750 1951 aaKnown RBP13.31□□□□□ -0.28
SH3RF1-201ENST00000284637 TRGV4A0A0C4DH28 118 aa13.31□□□□□ -0.28
SH3RF1-201ENST00000284637 A0A1W2PPI3 338 aa13.31□□□□□ -0.28
SH3RF1-201ENST00000284637 TMEM213A2RRL7 107 aa13.31□□□□□ -0.28
SH3RF1-201ENST00000284637 SMIM27A0A1W2PRY6 76 aa13.31□□□□□ -0.28
SH3RF1-201ENST00000284637 LINC00158P58513 81 aa13.31□□□□□ -0.28
SH3RF1-201ENST00000284637 FAM231DQ6ZW35 169 aa13.31□□□□□ -0.28
SH3RF1-201ENST00000284637 CHCHD5Q9BSY4 110 aa13.31□□□□□ -0.28
SH3RF1-201ENST00000284637 VWA8A3KMH1 1905 aa13.31□□□□□ -0.28
SH3RF1-201ENST00000284637 GGTLC3B5MD39 225 aa13.31□□□□□ -0.28
SH3RF1-201ENST00000284637 H3BMG7 143 aa13.31□□□□□ -0.28
SH3RF1-201ENST00000284637 NUPR1O60356 82 aa13.31□□□□□ -0.28
SH3RF1-201ENST00000284637 CFHR2P36980 270 aa13.31□□□□□ -0.28
SH3RF1-201ENST00000284637 VDAC2P45880 294 aaPredicted RBP13.31□□□□□ -0.28
SH3RF1-201ENST00000284637 LYPD1Q8N2G4 141 aa13.31□□□□□ -0.28
SH3RF1-201ENST00000284637 RNF5Q99942 180 aa13.31□□□□□ -0.28
SH3RF1-201ENST00000284637 TEX48A0A1B0GUV7 120 aa13.31□□□□□ -0.28
SH3RF1-201ENST00000284637 ERCC8Q13216 396 aa13.31□□□□□ -0.28
SH3RF1-201ENST00000284637 PLA2G2EQ9NZK7 142 aa13.31□□□□□ -0.28
SH3RF1-201ENST00000284637 SS18L2Q9UHA2 77 aa13.31□□□□□ -0.28
SH3RF1-201ENST00000284637 FCN3O75636 299 aa13.3□□□□□ -0.28
SH3RF1-201ENST00000284637 LY6HO94772 140 aa13.3□□□□□ -0.28
SH3RF1-201ENST00000284637 ADARB2-AS1A8MUL3 147 aa13.3□□□□□ -0.28
SH3RF1-201ENST00000284637 C11orf52Q96A22 123 aa13.3□□□□□ -0.28
SH3RF1-201ENST00000284637 XIRP1Q702N8 1843 aaKnown RBP13.29□□□□□ -0.28
SH3RF1-201ENST00000284637 MORN3Q6PF18 240 aaPredicted RBP13.29□□□□□ -0.28
SH3RF1-201ENST00000284637 C9orf139Q6ZV77 190 aa13.29□□□□□ -0.28
SH3RF1-201ENST00000284637 VCYO14598 125 aa13.29□□□□□ -0.28
SH3RF1-201ENST00000284637 ZNF492Q9P255 531 aa13.29□□□□□ -0.28
SH3RF1-201ENST00000284637 C3orf36Q3SXR2 165 aa13.29□□□□□ -0.28
SH3RF1-201ENST00000284637 SLC25A20O43772 301 aa13.28□□□□□ -0.28
SH3RF1-201ENST00000284637 VWC2Q2TAL6 325 aa13.28□□□□□ -0.28
SH3RF1-201ENST00000284637 BRD3OSQ6XYD6 125 aa13.28□□□□□ -0.28
SH3RF1-201ENST00000284637 SPANXDQ9BXN6 97 aa13.28□□□□□ -0.28
SH3RF1-201ENST00000284637 LTBP1Q14766 1721 aa13.28□□□□□ -0.28
SH3RF1-201ENST00000284637 A0A087WWL8 130 aa13.28□□□□□ -0.28
SH3RF1-201ENST00000284637 WIPF3A6NGB9 483 aa13.28□□□□□ -0.28
SH3RF1-201ENST00000284637 PLEKHB2Q96CS7 222 aa13.28□□□□□ -0.28
SH3RF1-201ENST00000284637 CSRP1P21291 193 aaKnown RBP13.28□□□□□ -0.28
SH3RF1-201ENST00000284637 SHANK2-AS3Q9BTD1 123 aa13.28□□□□□ -0.28
SH3RF1-201ENST00000284637 PRSS57Q6UWY2 283 aa13.28□□□□□ -0.28
SH3RF1-201ENST00000284637 C1QTNF4Q9BXJ3 329 aa13.28□□□□□ -0.28
SH3RF1-201ENST00000284637 SIP14410 1827 aa13.28□□□□□ -0.28
SH3RF1-201ENST00000284637 ASPHD1Q5U4P2 390 aa13.27□□□□□ -0.28
SH3RF1-201ENST00000284637 C11orf68Q9H3H3 251 aaKnown RBP13.27□□□□□ -0.28
SH3RF1-201ENST00000284637 TMEM14BQ9NUH8 114 aa13.27□□□□□ -0.28
SH3RF1-201ENST00000284637 LINC00477Q96M19 166 aa13.27□□□□□ -0.29
SH3RF1-201ENST00000284637 A0A0G2JNJ9 132 aa13.26□□□□□ -0.29
SH3RF1-201ENST00000284637 TAL2Q16559 108 aa13.26□□□□□ -0.29
SH3RF1-201ENST00000284637 GATD1Q8NB37 220 aa13.26□□□□□ -0.29
SH3RF1-201ENST00000284637 Q9UFV3 132 aa13.26□□□□□ -0.29
SH3RF1-201ENST00000284637 COL8A2P25067 703 aa13.26□□□□□ -0.29
SH3RF1-201ENST00000284637 TMEM86BQ8N661 226 aa13.26□□□□□ -0.29
SH3RF1-201ENST00000284637 IGLC1P0CG04 106 aa13.26□□□□□ -0.29
SH3RF1-201ENST00000284637 SMIM20Q8N5G0 67 aa13.26□□□□□ -0.29
SH3RF1-201ENST00000284637 H3BUX3 64 aa13.25□□□□□ -0.29
SH3RF1-201ENST00000284637 RSPO1Q2MKA7 263 aaPredicted RBP13.25□□□□□ -0.29
SH3RF1-201ENST00000284637 MINOS1Q5TGZ0 78 aa13.25□□□□□ -0.29
SH3RF1-201ENST00000284637 MINOS1-NBL1R4GNA1 71 aa13.25□□□□□ -0.29
SH3RF1-201ENST00000284637 C8orf49Q96NF6 230 aa13.25□□□□□ -0.29
SH3RF1-201ENST00000284637 PAX4O43316 350 aa13.25□□□□□ -0.29
SH3RF1-201ENST00000284637 AMTNQ6UX39 209 aa13.25□□□□□ -0.29
SH3RF1-201ENST00000284637 SPXQ9BT56 116 aa13.25□□□□□ -0.29
SH3RF1-201ENST00000284637 MBD3L4A6NDZ8 208 aaPredicted RBP13.25□□□□□ -0.29
SH3RF1-201ENST00000284637 MBD3L3A6NE82 208 aaPredicted RBP13.25□□□□□ -0.29
SH3RF1-201ENST00000284637 MBD3L5A6NJ08 208 aaPredicted RBP13.25□□□□□ -0.29
SH3RF1-201ENST00000284637 TAX1BP3O14907 124 aa13.25□□□□□ -0.29
SH3RF1-201ENST00000284637 LMO1P25800 156 aa13.25□□□□□ -0.29
SH3RF1-201ENST00000284637 MBD3L2Q8NHZ7 208 aaPredicted RBP13.25□□□□□ -0.29
SH3RF1-201ENST00000284637 ETV2O00321 342 aaPredicted RBP13.24□□□□□ -0.29
SH3RF1-201ENST00000284637 CEND1Q8N111 149 aa13.24□□□□□ -0.29
SH3RF1-201ENST00000284637 MYLKQ15746 1914 aa13.24□□□□□ -0.29
SH3RF1-201ENST00000284637 OOSP1A8MZH6 123 aa13.24□□□□□ -0.29
SH3RF1-201ENST00000284637 CRPP02741 224 aa13.24□□□□□ -0.29
SH3RF1-201ENST00000284637 TRAV8-3A0A0A6YYJ7 113 aa13.24□□□□□ -0.29
SH3RF1-201ENST00000284637 TRBV7-1A0A0A6YYK4 115 aa13.24□□□□□ -0.29
SH3RF1-201ENST00000284637 H3BMM0 161 aa13.24□□□□□ -0.29
SH3RF1-201ENST00000284637 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.24□□□□□ -0.29
SH3RF1-201ENST00000284637 IGHV3-53P01767 116 aa13.24□□□□□ -0.29
SH3RF1-201ENST00000284637 LY6DQ14210 128 aa13.24□□□□□ -0.29
SH3RF1-201ENST00000284637 UBE2WQ96B02 151 aa13.24□□□□□ -0.29
SH3RF1-201ENST00000284637 KLF5Q13887 457 aaPredicted RBP13.24□□□□□ -0.29
SH3RF1-201ENST00000284637 ANKRD39Q53RE8 183 aa13.24□□□□□ -0.29
SH3RF1-201ENST00000284637 WDR86Q86TI4 376 aa13.24□□□□□ -0.29
SH3RF1-201ENST00000284637 C1orf159Q96HA4 380 aa13.24□□□□□ -0.29
SH3RF1-201ENST00000284637 TRPM7Q96QT4 1865 aa13.23□□□□□ -0.29
SH3RF1-201ENST00000284637 NDUFA4L2Q9NRX3 87 aa13.23□□□□□ -0.29
SH3RF1-201ENST00000284637 FAM104BQ5XKR9 115 aa13.23□□□□□ -0.29
SH3RF1-201ENST00000284637 G3V4G9 280 aa13.23□□□□□ -0.29
SH3RF1-201ENST00000284637 EFNA4P52798 201 aa13.23□□□□□ -0.29
SH3RF1-201ENST00000284637 DUX4L9Q6RFH8 374 aaPredicted RBP13.23□□□□□ -0.29
SH3RF1-201ENST00000284637 Q6ZR03 302 aa13.23□□□□□ -0.29
SH3RF1-201ENST00000284637 RHPN1-AS1Q9BWJ2 59 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms