RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 CLEC5AQ9NY25 188 aa10.99□□□□□ -0.65
UPF1-202ENST00000594243 IGLC2P0DOY2 106 aa10.98□□□□□ -0.65
UPF1-202ENST00000594243 DEFB1P60022 68 aa10.98□□□□□ -0.65
UPF1-202ENST00000594243 PSG3Q16557 428 aa10.98□□□□□ -0.65
UPF1-202ENST00000594243 GCSAMLQ5JQS6 135 aa10.98□□□□□ -0.65
UPF1-202ENST00000594243 RNF182Q8N6D2 247 aa10.98□□□□□ -0.65
UPF1-202ENST00000594243 OR11H2Q8NH07 326 aa10.98□□□□□ -0.65
UPF1-202ENST00000594243 MRPL32Q9BYC8 188 aaKnown RBP10.98□□□□□ -0.65
UPF1-202ENST00000594243 WFDC1Q9HC57 220 aa10.98□□□□□ -0.65
UPF1-202ENST00000594243 ZNF331Q9NQX6 463 aaPredicted RBP10.98□□□□□ -0.65
UPF1-202ENST00000594243 TMEM14CQ9P0S9 112 aa10.98□□□□□ -0.65
UPF1-202ENST00000594243 F6UB75 175 aa10.97□□□□□ -0.65
UPF1-202ENST00000594243 DUSP14O95147 198 aaKnown RBP10.97□□□□□ -0.65
UPF1-202ENST00000594243 IGKV3-20P01619 116 aa10.97□□□□□ -0.65
UPF1-202ENST00000594243 GIG44P09565 113 aaPredicted RBP10.97□□□□□ -0.65
UPF1-202ENST00000594243 C4BPBP20851 252 aa10.97□□□□□ -0.65
UPF1-202ENST00000594243 FFAR4Q5NUL3 377 aa10.97□□□□□ -0.65
UPF1-202ENST00000594243 ZNF738Q8NE65 137 aa10.97□□□□□ -0.65
UPF1-202ENST00000594243 RYR3Q15413 4870 aa10.96□□□□□ -0.65
UPF1-202ENST00000594243 FXYD6-FXYD2A0A087WZ82 144 aa10.96□□□□□ -0.65
UPF1-202ENST00000594243 H3BQ15 152 aa10.96□□□□□ -0.65
UPF1-202ENST00000594243 SNRPCP09234 159 aaKnown RBP10.96□□□□□ -0.65
UPF1-202ENST00000594243 PSG9Q00887 426 aa10.96□□□□□ -0.65
UPF1-202ENST00000594243 SAT2Q96F10 170 aaPredicted RBP10.96□□□□□ -0.65
UPF1-202ENST00000594243 TNFSF18Q9UNG2 199 aa10.96□□□□□ -0.65
UPF1-202ENST00000594243 FUT9Q9Y231 359 aa10.96□□□□□ -0.65
UPF1-202ENST00000594243 TIMM9Q9Y5J7 89 aa10.96□□□□□ -0.65
UPF1-202ENST00000594243 STAB2Q8WWQ8 2551 aa10.95□□□□□ -0.66
UPF1-202ENST00000594243 A0A0J9YWU9 116 aa10.95□□□□□ -0.66
UPF1-202ENST00000594243 ZNF253O75346 499 aa10.95□□□□□ -0.66
UPF1-202ENST00000594243 HIST1H1EP10412 219 aaKnown RBP10.95□□□□□ -0.66
UPF1-202ENST00000594243 ACOT6Q3I5F7 207 aaPredicted RBP10.95□□□□□ -0.66
UPF1-202ENST00000594243 MIR17HGQ75NE6 70 aa10.95□□□□□ -0.66
UPF1-202ENST00000594243 CSNK1G2-AS1Q8NCQ2 148 aa10.95□□□□□ -0.66
UPF1-202ENST00000594243 ZNF586Q9NXT0 402 aa10.95□□□□□ -0.66
UPF1-202ENST00000594243 XCL2Q9UBD3 114 aa10.95□□□□□ -0.66
UPF1-202ENST00000594243 HUWE1Q7Z6Z7 4374 aaKnown RBP10.95□□□□□ -0.66
UPF1-202ENST00000594243 TRBV19A0A075B6N1 114 aa10.94□□□□□ -0.66
UPF1-202ENST00000594243 H3BTX0 84 aa10.94□□□□□ -0.66
UPF1-202ENST00000594243 HLA-DMBP28068 263 aa10.94□□□□□ -0.66
UPF1-202ENST00000594243 CNN1P51911 297 aaKnown RBP10.94□□□□□ -0.66
UPF1-202ENST00000594243 RHOBP62745 196 aa10.94□□□□□ -0.66
UPF1-202ENST00000594243 PDE6HQ13956 83 aa10.94□□□□□ -0.66
UPF1-202ENST00000594243 RPUSD4Q96CM3 377 aaKnown RBP10.94□□□□□ -0.66
UPF1-202ENST00000594243 SLC25A2Q9BXI2 301 aa10.94□□□□□ -0.66
UPF1-202ENST00000594243 MFFQ9GZY8 342 aa10.94□□□□□ -0.66
UPF1-202ENST00000594243 OR51M1Q9H341 326 aa10.94□□□□□ -0.66
UPF1-202ENST00000594243 RNF222A6NCQ9 220 aa10.93□□□□□ -0.66
UPF1-202ENST00000594243 A8MTW9 85 aa10.93□□□□□ -0.66
UPF1-202ENST00000594243 ZNF705EA8MWA4 302 aaPredicted RBP10.93□□□□□ -0.66
UPF1-202ENST00000594243 SLC17A3O00476 420 aa10.93□□□□□ -0.66
UPF1-202ENST00000594243 PYYP10082 97 aa10.93□□□□□ -0.66
UPF1-202ENST00000594243 MIFP14174 115 aa10.93□□□□□ -0.66
UPF1-202ENST00000594243 M6PRP20645 277 aa10.93□□□□□ -0.66
UPF1-202ENST00000594243 FXYD7P58549 80 aa10.93□□□□□ -0.66
UPF1-202ENST00000594243 TAS2R45P59539 299 aa10.93□□□□□ -0.66
UPF1-202ENST00000594243 CASC10Q5T4H9 136 aa10.93□□□□□ -0.66
UPF1-202ENST00000594243 OR8A1Q8NGG7 326 aa10.93□□□□□ -0.66
UPF1-202ENST00000594243 FAM167A-AS1Q96KT0 104 aa10.93□□□□□ -0.66
UPF1-202ENST00000594243 SLC35B3Q9H1N7 401 aa10.93□□□□□ -0.66
UPF1-202ENST00000594243 BORCS7-ASMTA0A0B4J1R7 106 aa10.92□□□□□ -0.66
UPF1-202ENST00000594243 A0A1W2PPV4 95 aa10.92□□□□□ -0.66
UPF1-202ENST00000594243 G3V3Q6 166 aa10.92□□□□□ -0.66
UPF1-202ENST00000594243 AMBPP02760 352 aa10.92□□□□□ -0.66
UPF1-202ENST00000594243 NBEAP1P0C6P0 100 aa10.92□□□□□ -0.66
UPF1-202ENST00000594243 ZNF705DP0CH99 300 aaPredicted RBP10.92□□□□□ -0.66
UPF1-202ENST00000594243 ZNF705BP0CI00 300 aaPredicted RBP10.92□□□□□ -0.66
UPF1-202ENST00000594243 HIST1H1AQ02539 215 aaPredicted RBP10.92□□□□□ -0.66
UPF1-202ENST00000594243 HSD17B11Q8NBQ5 300 aa10.92□□□□□ -0.66
UPF1-202ENST00000594243 BLNKQ8WV28 456 aa10.92□□□□□ -0.66
UPF1-202ENST00000594243 RNF141Q8WVD5 230 aa10.92□□□□□ -0.66
UPF1-202ENST00000594243 PSMG3Q9BT73 122 aaPredicted RBP10.92□□□□□ -0.66
UPF1-202ENST00000594243 PAXXQ9BUH6 204 aa10.92□□□□□ -0.66
UPF1-202ENST00000594243 PPP1R14DQ9NXH3 145 aa10.92□□□□□ -0.66
UPF1-202ENST00000594243 PRELID1Q9Y255 219 aa10.92□□□□□ -0.66
UPF1-202ENST00000594243 ZNF705FA8MVS1 300 aaPredicted RBP10.91□□□□□ -0.66
UPF1-202ENST00000594243 TAAR5O14804 337 aa10.91□□□□□ -0.66
UPF1-202ENST00000594243 ARPC5O15511 151 aa10.91□□□□□ -0.66
UPF1-202ENST00000594243 OR7C2O60412 319 aa10.91□□□□□ -0.66
UPF1-202ENST00000594243 SERF2P84101 59 aa10.91□□□□□ -0.66
UPF1-202ENST00000594243 KHDC3LQ587J8 217 aa10.91□□□□□ -0.66
UPF1-202ENST00000594243 AMTNQ6UX39 209 aa10.91□□□□□ -0.66
UPF1-202ENST00000594243 OR10G4Q8NGN3 311 aa10.91□□□□□ -0.66
UPF1-202ENST00000594243 OR10G9Q8NGN4 311 aa10.91□□□□□ -0.66
UPF1-202ENST00000594243 OR10G7Q8NGN6 311 aa10.91□□□□□ -0.66
UPF1-202ENST00000594243 OR10J6PQ8NGY7 276 aa10.91□□□□□ -0.66
UPF1-202ENST00000594243 OR2G3Q8NGZ4 309 aa10.91□□□□□ -0.66
UPF1-202ENST00000594243 MRPL53Q96EL3 112 aaKnown RBP10.91□□□□□ -0.66
UPF1-202ENST00000594243 C11orf68Q9H3H3 251 aaKnown RBP10.91□□□□□ -0.66
UPF1-202ENST00000594243 AAMDCQ9H7C9 122 aa10.91□□□□□ -0.66
UPF1-202ENST00000594243 NDUFB4O95168 129 aa10.9□□□□□ -0.66
UPF1-202ENST00000594243 MBP02144 154 aa10.9□□□□□ -0.66
UPF1-202ENST00000594243 ATP6V0CP27449 155 aa10.9□□□□□ -0.66
UPF1-202ENST00000594243 ZFAND6Q6FIF0 208 aa10.9□□□□□ -0.66
UPF1-202ENST00000594243 ZNF705AQ6ZN79 300 aaPredicted RBP10.9□□□□□ -0.66
UPF1-202ENST00000594243 GNPNAT1Q96EK6 184 aaPredicted RBP10.9□□□□□ -0.66
UPF1-202ENST00000594243 GOLT1BQ9Y3E0 138 aa10.9□□□□□ -0.66
UPF1-202ENST00000594243 RFNGQ9Y644 331 aa10.9□□□□□ -0.66
UPF1-202ENST00000594243 X6R8D5 127 aa10.9□□□□□ -0.66
UPF1-202ENST00000594243 SMIM9A6NGZ8 99 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms