RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 RNF182Q8N6D2 247 aa10.53□□□□□ -0.72
CLN3-236ENST00000568558 C15orf53Q8NAA6 179 aa10.53□□□□□ -0.72
CLN3-236ENST00000568558 SMIM8Q96KF7 97 aa10.53□□□□□ -0.72
CLN3-236ENST00000568558 C5orf51A6NDU8 294 aa10.52□□□□□ -0.73
CLN3-236ENST00000568558 LYRM9A8MSI8 78 aa10.52□□□□□ -0.73
CLN3-236ENST00000568558 ZNF705GA8MUZ8 300 aaPredicted RBP10.52□□□□□ -0.73
CLN3-236ENST00000568558 H3BRN7 92 aa10.52□□□□□ -0.73
CLN3-236ENST00000568558 METTL15P1P0C7V9 234 aa10.52□□□□□ -0.73
CLN3-236ENST00000568558 C1orf134Q5TEV5 83 aa10.52□□□□□ -0.73
CLN3-236ENST00000568558 TMEM144Q7Z5S9 345 aa10.52□□□□□ -0.73
CLN3-236ENST00000568558 ZNF575Q86XF7 245 aa10.52□□□□□ -0.73
CLN3-236ENST00000568558 C7orf66A4D0T2 115 aa10.51□□□□□ -0.73
CLN3-236ENST00000568558 INMT-MINDY4F8WBC2 141 aa10.51□□□□□ -0.73
CLN3-236ENST00000568558 K7EPK0 472 aa10.51□□□□□ -0.73
CLN3-236ENST00000568558 TSPOP30536 169 aa10.51□□□□□ -0.73
CLN3-236ENST00000568558 FAM3BP58499 235 aaPredicted RBP10.51□□□□□ -0.73
CLN3-236ENST00000568558 B2MP61769 119 aa10.51□□□□□ -0.73
CLN3-236ENST00000568558 FGL1Q08830 312 aa10.51□□□□□ -0.73
CLN3-236ENST00000568558 TMEM14EPQ6UXP3 125 aa10.51□□□□□ -0.73
CLN3-236ENST00000568558 CYP2G1PQ6ZSU1 146 aa10.51□□□□□ -0.73
CLN3-236ENST00000568558 BAP18Q8IXM2 172 aa10.51□□□□□ -0.73
CLN3-236ENST00000568558 C2orf50Q96LR7 162 aa10.51□□□□□ -0.73
CLN3-236ENST00000568558 SHANK2-AS3Q9BTD1 123 aa10.51□□□□□ -0.73
CLN3-236ENST00000568558 SLC25A39Q9BZJ4 359 aaPredicted RBP10.51□□□□□ -0.73
CLN3-236ENST00000568558 C11orf1Q9H5F2 150 aa10.51□□□□□ -0.73
CLN3-236ENST00000568558 PLAC8L1A1L4L8 177 aa10.5□□□□□ -0.73
CLN3-236ENST00000568558 BOLA2-SMG1P6H3BVE0 249 aa10.5□□□□□ -0.73
CLN3-236ENST00000568558 RPL7P18124 248 aaKnown RBP10.5□□□□□ -0.73
CLN3-236ENST00000568558 DEFA1P59665 94 aa10.5□□□□□ -0.73
CLN3-236ENST00000568558 DEFA3P59666 94 aa10.5□□□□□ -0.73
CLN3-236ENST00000568558 RAP2BP61225 183 aa10.5□□□□□ -0.73
CLN3-236ENST00000568558 ARL16Q0P5N6 197 aa10.5□□□□□ -0.73
CLN3-236ENST00000568558 IL15RAQ13261 267 aa10.5□□□□□ -0.73
CLN3-236ENST00000568558 ZNF738Q8NE65 137 aa10.5□□□□□ -0.73
CLN3-236ENST00000568558 MARVELD1Q9BSK0 173 aa10.5□□□□□ -0.73
CLN3-236ENST00000568558 HIGD1AQ9Y241 93 aa10.5□□□□□ -0.73
CLN3-236ENST00000568558 LSM5Q9Y4Y9 91 aaKnown RBP10.5□□□□□ -0.73
CLN3-236ENST00000568558 TRAV12-2A0A075B6T6 113 aa10.49□□□□□ -0.73
CLN3-236ENST00000568558 SMCO3A2RU48 225 aa10.49□□□□□ -0.73
CLN3-236ENST00000568558 TSC22D2O75157 780 aa10.49□□□□□ -0.73
CLN3-236ENST00000568558 SIX6O95475 246 aa10.49□□□□□ -0.73
CLN3-236ENST00000568558 DEFB130BP0DP73 79 aa10.49□□□□□ -0.73
CLN3-236ENST00000568558 DEFB130AP0DP74 79 aa10.49□□□□□ -0.73
CLN3-236ENST00000568558 AZU1P20160 251 aa10.49□□□□□ -0.73
CLN3-236ENST00000568558 TAS2R30P59541 319 aa10.49□□□□□ -0.73
CLN3-236ENST00000568558 PLP1P60201 277 aa10.49□□□□□ -0.73
CLN3-236ENST00000568558 RRAS2P62070 204 aaPredicted RBP10.49□□□□□ -0.73
CLN3-236ENST00000568558 ATG101Q9BSB4 218 aa10.49□□□□□ -0.73
CLN3-236ENST00000568558 GPN1Q9HCN4 374 aaPredicted RBP10.49□□□□□ -0.73
CLN3-236ENST00000568558 A0A087X0K7 114 aa10.48□□□□□ -0.73
CLN3-236ENST00000568558 GOSR2O14653 212 aa10.48□□□□□ -0.73
CLN3-236ENST00000568558 HYPMO75409 117 aa10.48□□□□□ -0.73
CLN3-236ENST00000568558 LINC00869P0C866 280 aa10.48□□□□□ -0.73
CLN3-236ENST00000568558 SELENOTP62341 195 aa10.48□□□□□ -0.73
CLN3-236ENST00000568558 RAB32Q13637 225 aa10.48□□□□□ -0.73
CLN3-236ENST00000568558 OR8A1Q8NGG7 326 aa10.48□□□□□ -0.73
CLN3-236ENST00000568558 UHRF2Q96PU4 802 aa10.48□□□□□ -0.73
CLN3-236ENST00000568558 APOBP04114 4563 aaKnown RBP10.48□□□□□ -0.73
CLN3-236ENST00000568558 F5H768 121 aa10.47□□□□□ -0.73
CLN3-236ENST00000568558 PRAF2O60831 178 aa10.47□□□□□ -0.73
CLN3-236ENST00000568558 ATP5G1P05496 136 aa10.47□□□□□ -0.73
CLN3-236ENST00000568558 OR5G3P0C626 314 aa10.47□□□□□ -0.73
CLN3-236ENST00000568558 CXCL3P19876 107 aa10.47□□□□□ -0.73
CLN3-236ENST00000568558 ATP5G3P48201 142 aa10.47□□□□□ -0.73
CLN3-236ENST00000568558 S100A10P60903 97 aa10.47□□□□□ -0.73
CLN3-236ENST00000568558 HIST1H1AQ02539 215 aaPredicted RBP10.47□□□□□ -0.73
CLN3-236ENST00000568558 FCN2Q15485 313 aa10.47□□□□□ -0.73
CLN3-236ENST00000568558 PSG3Q16557 428 aa10.47□□□□□ -0.73
CLN3-236ENST00000568558 TMEM256Q8N2U0 113 aa10.47□□□□□ -0.73
CLN3-236ENST00000568558 ZNRF2Q8NHG8 242 aa10.47□□□□□ -0.73
CLN3-236ENST00000568558 LINC01587Q99440 93 aa10.47□□□□□ -0.73
CLN3-236ENST00000568558 DNAH5Q8TE73 4624 aa10.46□□□□□ -0.73
CLN3-236ENST00000568558 NBDYA0A0U1RRE5 68 aa10.46□□□□□ -0.73
CLN3-236ENST00000568558 FAM24AA6NFZ4 105 aa10.46□□□□□ -0.73
CLN3-236ENST00000568558 L7N2F9 121 aa10.46□□□□□ -0.73
CLN3-236ENST00000568558 NUDT3O95989 172 aa10.46□□□□□ -0.73
CLN3-236ENST00000568558 TAS2R60P59551 318 aa10.46□□□□□ -0.73
CLN3-236ENST00000568558 RHOBP62745 196 aa10.46□□□□□ -0.73
CLN3-236ENST00000568558 VAMP2P63027 116 aa10.46□□□□□ -0.73
CLN3-236ENST00000568558 DLK1P80370 383 aa10.46□□□□□ -0.73
CLN3-236ENST00000568558 OR10P1Q8NGE3 313 aa10.46□□□□□ -0.73
CLN3-236ENST00000568558 CBY3A6NI87 242 aa10.45□□□□□ -0.74
CLN3-236ENST00000568558 MRPS12O15235 138 aaKnown RBP10.45□□□□□ -0.74
CLN3-236ENST00000568558 CST7O76096 145 aa10.45□□□□□ -0.74
CLN3-236ENST00000568558 BCAP31P51572 246 aa10.45□□□□□ -0.74
CLN3-236ENST00000568558 CAV2P51636 162 aa10.45□□□□□ -0.74
CLN3-236ENST00000568558 TNP2Q05952 138 aa10.45□□□□□ -0.74
CLN3-236ENST00000568558 PATE2Q6UY27 113 aa10.45□□□□□ -0.74
CLN3-236ENST00000568558 LRRC20Q8TCA0 184 aa10.45□□□□□ -0.74
CLN3-236ENST00000568558 C16orf74Q96GX8 76 aa10.45□□□□□ -0.74
CLN3-236ENST00000568558 KRTAP4-5Q9BYR2 181 aa10.45□□□□□ -0.74
CLN3-236ENST00000568558 ARL6Q9H0F7 186 aa10.45□□□□□ -0.74
CLN3-236ENST00000568558 ARV1Q9H2C2 271 aa10.45□□□□□ -0.74
CLN3-236ENST00000568558 NPVFQ9HCQ7 196 aa10.45□□□□□ -0.74
CLN3-236ENST00000568558 PPP1R14DQ9NXH3 145 aa10.45□□□□□ -0.74
CLN3-236ENST00000568558 IGSF23A1L1A6 192 aa10.44□□□□□ -0.74
CLN3-236ENST00000568558 FNDC10F2Z333 226 aa10.44□□□□□ -0.74
CLN3-236ENST00000568558 PRB4P10163 310 aaPredicted RBP10.44□□□□□ -0.74
CLN3-236ENST00000568558 CCL18P55774 89 aa10.44□□□□□ -0.74
CLN3-236ENST00000568558 H2BFSP57053 126 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms