RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 LOC102723971A0A1B0GUV8 181 aa9.72□□□□□ -0.85
CLK3-214ENST00000564096 RBFOX3A6NFN3 312 aa9.72□□□□□ -0.85
CLK3-214ENST00000564096 SAP30O75446 220 aa9.72□□□□□ -0.85
CLK3-214ENST00000564096 PAFAH1B2P68402 229 aa9.72□□□□□ -0.85
CLK3-214ENST00000564096 CCL20P78556 96 aa9.72□□□□□ -0.85
CLK3-214ENST00000564096 MEF2BQ02080 365 aaPredicted RBP9.72□□□□□ -0.85
CLK3-214ENST00000564096 PEA15Q15121 130 aa9.72□□□□□ -0.85
CLK3-214ENST00000564096 HAGHQ16775 308 aa9.72□□□□□ -0.85
CLK3-214ENST00000564096 ZNF506Q5JVG8 444 aa9.72□□□□□ -0.85
CLK3-214ENST00000564096 CST9LP1Q5W188 147 aa9.72□□□□□ -0.85
CLK3-214ENST00000564096 UQCC3Q6UW78 93 aa9.72□□□□□ -0.85
CLK3-214ENST00000564096 RBPMS2Q6ZRY4 209 aaKnown RBP9.72□□□□□ -0.85
CLK3-214ENST00000564096 LYPD1Q8N2G4 141 aa9.72□□□□□ -0.85
CLK3-214ENST00000564096 MCRIP2Q9BUT9 160 aaKnown RBP9.72□□□□□ -0.85
CLK3-214ENST00000564096 SMDT1Q9H4I9 107 aa9.72□□□□□ -0.85
CLK3-214ENST00000564096 CLEC5AQ9NY25 188 aa9.72□□□□□ -0.85
CLK3-214ENST00000564096 VAX2Q9UIW0 290 aa9.72□□□□□ -0.85
CLK3-214ENST00000564096 FAM74A7A6NL05 159 aa9.71□□□□□ -0.86
CLK3-214ENST00000564096 C11orf94C9JXX5 98 aa9.71□□□□□ -0.86
CLK3-214ENST00000564096 H3BQ15 152 aa9.71□□□□□ -0.86
CLK3-214ENST00000564096 PAGE4O60829 102 aa9.71□□□□□ -0.86
CLK3-214ENST00000564096 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.71□□□□□ -0.86
CLK3-214ENST00000564096 OR2K2Q8NGT1 345 aa9.71□□□□□ -0.86
CLK3-214ENST00000564096 CMTM2Q8TAZ6 248 aa9.71□□□□□ -0.86
CLK3-214ENST00000564096 OTORQ9NRC9 128 aa9.71□□□□□ -0.86
CLK3-214ENST00000564096 ZNF586Q9NXT0 402 aa9.71□□□□□ -0.86
CLK3-214ENST00000564096 MLXQ9UH92 298 aa9.71□□□□□ -0.86
CLK3-214ENST00000564096 TRAV2A0A0B4J234 112 aa9.7□□□□□ -0.86
CLK3-214ENST00000564096 TRAV25A0A0B4J276 109 aa9.7□□□□□ -0.86
CLK3-214ENST00000564096 F6UZH7 168 aa9.7□□□□□ -0.86
CLK3-214ENST00000564096 H3BTX0 84 aa9.7□□□□□ -0.86
CLK3-214ENST00000564096 DNASE2O00115 360 aaPredicted RBP9.7□□□□□ -0.86
CLK3-214ENST00000564096 PDE6DO43924 150 aa9.7□□□□□ -0.86
CLK3-214ENST00000564096 CD33P20138 364 aa9.7□□□□□ -0.86
CLK3-214ENST00000564096 EDN2P20800 178 aa9.7□□□□□ -0.86
CLK3-214ENST00000564096 ID1P41134 155 aa9.7□□□□□ -0.86
CLK3-214ENST00000564096 INSL3P51460 131 aa9.7□□□□□ -0.86
CLK3-214ENST00000564096 RANP62826 216 aaKnown RBP9.7□□□□□ -0.86
CLK3-214ENST00000564096 C16orf92Q96LL3 132 aa9.7□□□□□ -0.86
CLK3-214ENST00000564096 GPR61Q9BZJ8 451 aa9.7□□□□□ -0.86
CLK3-214ENST00000564096 Q9H3A6 140 aa9.7□□□□□ -0.86
CLK3-214ENST00000564096 YTHDF2Q9Y5A9 579 aaKnown RBP9.7□□□□□ -0.86
CLK3-214ENST00000564096 ATRQ13535 2644 aa9.69□□□□□ -0.86
CLK3-214ENST00000564096 ISLRO14498 428 aa9.69□□□□□ -0.86
CLK3-214ENST00000564096 NDUFS6O75380 124 aaKnown RBP9.69□□□□□ -0.86
CLK3-214ENST00000564096 SNRPCP09234 159 aaKnown RBP9.69□□□□□ -0.86
CLK3-214ENST00000564096 CSN1S1P47710 185 aa9.69□□□□□ -0.86
CLK3-214ENST00000564096 SNRPD3P62318 126 aaKnown RBP9.69□□□□□ -0.86
CLK3-214ENST00000564096 C9orf66Q5T8R8 295 aa9.69□□□□□ -0.86
CLK3-214ENST00000564096 LCN12Q6JVE5 192 aa9.69□□□□□ -0.86
CLK3-214ENST00000564096 C5orf17Q8NAS9 161 aa9.69□□□□□ -0.86
CLK3-214ENST00000564096 RXFP4Q8TDU9 374 aa9.69□□□□□ -0.86
CLK3-214ENST00000564096 SPAG8Q99932 426 aaPredicted RBP9.69□□□□□ -0.86
CLK3-214ENST00000564096 TREM1Q9NP99 234 aa9.69□□□□□ -0.86
CLK3-214ENST00000564096 ZNF331Q9NQX6 463 aaPredicted RBP9.69□□□□□ -0.86
CLK3-214ENST00000564096 PRELID1Q9Y255 219 aa9.69□□□□□ -0.86
CLK3-214ENST00000564096 SMAD5-AS1Q9Y6J3 95 aa9.69□□□□□ -0.86
CLK3-214ENST00000564096 IGKV3-7A0A075B6H7 116 aa9.68□□□□□ -0.86
CLK3-214ENST00000564096 OR4C46A6NHA9 309 aa9.68□□□□□ -0.86
CLK3-214ENST00000564096 GGTLC3B5MD39 225 aa9.68□□□□□ -0.86
CLK3-214ENST00000564096 SLC17A3O00476 420 aa9.68□□□□□ -0.86
CLK3-214ENST00000564096 TSPAN4O14817 238 aa9.68□□□□□ -0.86
CLK3-214ENST00000564096 SLC25A5P05141 298 aaKnown RBP9.68□□□□□ -0.86
CLK3-214ENST00000564096 ATP5G3P48201 142 aa9.68□□□□□ -0.86
CLK3-214ENST00000564096 ICAM4Q14773 271 aa9.68□□□□□ -0.86
CLK3-214ENST00000564096 DEFB114Q30KQ6 69 aa9.68□□□□□ -0.86
CLK3-214ENST00000564096 FAM90A2PQ658T7 463 aa9.68□□□□□ -0.86
CLK3-214ENST00000564096 ADAMTSL5Q6ZMM2 481 aa9.68□□□□□ -0.86
CLK3-214ENST00000564096 TMEM61Q8N0U2 210 aa9.68□□□□□ -0.86
CLK3-214ENST00000564096 EIF4E3Q8N5X7 224 aaKnown RBP9.68□□□□□ -0.86
CLK3-214ENST00000564096 MRPL53Q96EL3 112 aaKnown RBP9.68□□□□□ -0.86
CLK3-214ENST00000564096 MS4A6AQ9H2W1 248 aa9.68□□□□□ -0.86
CLK3-214ENST00000564096 SERTM2A0A1B0GWG4 89 aa9.67□□□□□ -0.86
CLK3-214ENST00000564096 TMEM250H0YL14 139 aa9.67□□□□□ -0.86
CLK3-214ENST00000564096 K7EQM0 130 aa9.67□□□□□ -0.86
CLK3-214ENST00000564096 NDUFB4O95168 129 aa9.67□□□□□ -0.86
CLK3-214ENST00000564096 CD300EQ496F6 205 aaPredicted RBP9.67□□□□□ -0.86
CLK3-214ENST00000564096 HIST1H2BAQ96A08 127 aa9.67□□□□□ -0.86
CLK3-214ENST00000564096 RPUSD4Q96CM3 377 aaKnown RBP9.67□□□□□ -0.86
CLK3-214ENST00000564096 RARRES2Q99969 163 aa9.67□□□□□ -0.86
CLK3-214ENST00000564096 KRTAP3-3Q9BYR6 98 aa9.67□□□□□ -0.86
CLK3-214ENST00000564096 KRTAP3-2Q9BYR7 98 aa9.67□□□□□ -0.86
CLK3-214ENST00000564096 DNHD1Q96M86 4753 aa9.66□□□□□ -0.86
CLK3-214ENST00000564096 PGPA6NDG6 321 aa9.66□□□□□ -0.86
CLK3-214ENST00000564096 SOCS3O14543 225 aa9.66□□□□□ -0.86
CLK3-214ENST00000564096 IGLV1-51P01701 117 aa9.66□□□□□ -0.86
CLK3-214ENST00000564096 AKR1C3P42330 323 aa9.66□□□□□ -0.86
CLK3-214ENST00000564096 TFPI2P48307 235 aa9.66□□□□□ -0.86
CLK3-214ENST00000564096 SUMO1P63165 101 aaKnown RBP9.66□□□□□ -0.86
CLK3-214ENST00000564096 EXOC3-AS1Q8N2X6 119 aa9.66□□□□□ -0.86
CLK3-214ENST00000564096 GBGT1Q8N5D6 347 aa9.66□□□□□ -0.86
CLK3-214ENST00000564096 ARL6IP6Q8N6S5 226 aa9.66□□□□□ -0.86
CLK3-214ENST00000564096 DCANP1Q8TF63 244 aa9.66□□□□□ -0.86
CLK3-214ENST00000564096 C17orf77Q96MU5 243 aa9.66□□□□□ -0.86
CLK3-214ENST00000564096 ATG101Q9BSB4 218 aa9.66□□□□□ -0.86
CLK3-214ENST00000564096 RPH3ALQ9UNE2 315 aa9.66□□□□□ -0.86
CLK3-214ENST00000564096 K7EQG2 157 aa9.65□□□□□ -0.86
CLK3-214ENST00000564096 PEX7O00628 323 aa9.65□□□□□ -0.86
CLK3-214ENST00000564096 CNN1P51911 297 aaKnown RBP9.65□□□□□ -0.86
CLK3-214ENST00000564096 CD81P60033 236 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 150.6 ms