RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 LY96Q9Y6Y9 160 aa8.64□□□□□ -1.03
CUX1-212ENST00000547394 IGHV1-69DA0A0B4J2H0 117 aa8.63□□□□□ -1.03
CUX1-212ENST00000547394 H3BUX3 64 aa8.63□□□□□ -1.03
CUX1-212ENST00000547394 IGHV1-69P01742 117 aa8.63□□□□□ -1.03
CUX1-212ENST00000547394 TAS2R60P59551 318 aa8.63□□□□□ -1.03
CUX1-212ENST00000547394 BLCAPP62952 87 aa8.63□□□□□ -1.03
CUX1-212ENST00000547394 NUP35Q8NFH5 326 aa8.63□□□□□ -1.03
CUX1-212ENST00000547394 OR4F17Q8NGA8 305 aa8.63□□□□□ -1.03
CUX1-212ENST00000547394 ITPR3Q14573 2671 aa8.63□□□□□ -1.03
CUX1-212ENST00000547394 IGKV2-40A0A087WW87 121 aaPredicted RBP8.63□□□□□ -1.03
CUX1-212ENST00000547394 MUC21A0A0G2JKD1 596 aa8.63□□□□□ -1.03
CUX1-212ENST00000547394 MUC21A0A140T8X8 626 aa8.63□□□□□ -1.03
CUX1-212ENST00000547394 OOSP1A8MZH6 123 aa8.63□□□□□ -1.03
CUX1-212ENST00000547394 IGKV2D-40P01614 121 aaPredicted RBP8.63□□□□□ -1.03
CUX1-212ENST00000547394 APOHP02749 345 aaPredicted RBP8.63□□□□□ -1.03
CUX1-212ENST00000547394 IGLC2P0DOY2 106 aa8.63□□□□□ -1.03
CUX1-212ENST00000547394 LINC00310P59036 64 aa8.63□□□□□ -1.03
CUX1-212ENST00000547394 SLAQ13239 276 aa8.63□□□□□ -1.03
CUX1-212ENST00000547394 MUC21Q5SSG8 566 aa8.63□□□□□ -1.03
CUX1-212ENST00000547394 HIST2H2BCQ6DN03 193 aa8.63□□□□□ -1.03
CUX1-212ENST00000547394 ZNF843Q8N446 348 aa8.63□□□□□ -1.03
CUX1-212ENST00000547394 C5orf56Q8N8D9 126 aa8.63□□□□□ -1.03
CUX1-212ENST00000547394 GPR82Q96P67 336 aa8.63□□□□□ -1.03
CUX1-212ENST00000547394 SRSF8Q9BRL6 282 aaKnown RBP8.63□□□□□ -1.03
CUX1-212ENST00000547394 C1RLQ9NZP8 487 aa8.63□□□□□ -1.03
CUX1-212ENST00000547394 FLNAP21333 2647 aaKnown RBP8.63□□□□□ -1.03
CUX1-212ENST00000547394 TMSB15BA0A087X1C1 80 aa8.63□□□□□ -1.03
CUX1-212ENST00000547394 WI2-2373I1.2A0A1W2PRP0 233 aa8.63□□□□□ -1.03
CUX1-212ENST00000547394 TMEM8BA6NDV4 472 aa8.63□□□□□ -1.03
CUX1-212ENST00000547394 SERF1AO75920 110 aa8.63□□□□□ -1.03
CUX1-212ENST00000547394 IGLV2-11P01706 119 aa8.63□□□□□ -1.03
CUX1-212ENST00000547394 IGHV3-11P01762 117 aa8.63□□□□□ -1.03
CUX1-212ENST00000547394 JOSD1Q15040 202 aaPredicted RBP8.63□□□□□ -1.03
CUX1-212ENST00000547394 IQCJQ1A5X6 159 aa8.63□□□□□ -1.03
CUX1-212ENST00000547394 TMEM95Q3KNT9 176 aa8.63□□□□□ -1.03
CUX1-212ENST00000547394 SIGLEC15Q6ZMC9 328 aa8.63□□□□□ -1.03
CUX1-212ENST00000547394 Q8TAT8 98 aa8.63□□□□□ -1.03
CUX1-212ENST00000547394 PGLYRP4Q96LB8 373 aa8.63□□□□□ -1.03
CUX1-212ENST00000547394 C8orf49Q96NF6 230 aa8.63□□□□□ -1.03
CUX1-212ENST00000547394 TPPP3Q9BW30 176 aa8.63□□□□□ -1.03
CUX1-212ENST00000547394 TRBV12-3P01733 135 aa8.62□□□□□ -1.03
CUX1-212ENST00000547394 CRISP2P16562 243 aa8.62□□□□□ -1.03
CUX1-212ENST00000547394 TMEM136Q6ZRR5 245 aa8.62□□□□□ -1.03
CUX1-212ENST00000547394 ZNF414Q96IQ9 312 aa8.62□□□□□ -1.03
CUX1-212ENST00000547394 CCDC140Q96MF4 163 aa8.62□□□□□ -1.03
CUX1-212ENST00000547394 TMEM68Q96MH6 324 aa8.62□□□□□ -1.03
CUX1-212ENST00000547394 RCHY1Q96PM5 261 aa8.62□□□□□ -1.03
CUX1-212ENST00000547394 SMIM27A0A1W2PRY6 76 aa8.62□□□□□ -1.03
CUX1-212ENST00000547394 TOMM20LQ6UXN7 152 aa8.62□□□□□ -1.03
CUX1-212ENST00000547394 Q86TA4 180 aa8.62□□□□□ -1.03
CUX1-212ENST00000547394 BAGE3Q86Y29 109 aa8.62□□□□□ -1.03
CUX1-212ENST00000547394 ZNF664Q8N3J9 261 aa8.62□□□□□ -1.03
CUX1-212ENST00000547394 RNF182Q8N6D2 247 aa8.62□□□□□ -1.03
CUX1-212ENST00000547394 OR2D3Q8NGH3 330 aa8.62□□□□□ -1.03
CUX1-212ENST00000547394 OR5R1Q8NH85 324 aa8.62□□□□□ -1.03
CUX1-212ENST00000547394 GTSF1Q8WW33 167 aa8.62□□□□□ -1.03
CUX1-212ENST00000547394 OTORQ9NRC9 128 aa8.62□□□□□ -1.03
CUX1-212ENST00000547394 THYN1Q9P016 225 aa8.62□□□□□ -1.03
CUX1-212ENST00000547394 ZNF785A8K8V0 405 aa8.61□□□□□ -1.03
CUX1-212ENST00000547394 MRPS12O15235 138 aaKnown RBP8.61□□□□□ -1.03
CUX1-212ENST00000547394 SRIP30626 198 aa8.61□□□□□ -1.03
CUX1-212ENST00000547394 YPEL3P61236 119 aaPredicted RBP8.61□□□□□ -1.03
CUX1-212ENST00000547394 ZC2HC1AQ96GY0 325 aa8.61□□□□□ -1.03
CUX1-212ENST00000547394 LTAP01374 205 aa8.61□□□□□ -1.03
CUX1-212ENST00000547394 MSMBP08118 114 aa8.61□□□□□ -1.03
CUX1-212ENST00000547394 DNLZQ5SXM8 178 aa8.61□□□□□ -1.03
CUX1-212ENST00000547394 MLST8Q9BVC4 326 aa8.61□□□□□ -1.03
CUX1-212ENST00000547394 SMAD5-AS1Q9Y6J3 95 aa8.61□□□□□ -1.03
CUX1-212ENST00000547394 P01737 135 aa8.6□□□□□ -1.03
CUX1-212ENST00000547394 GBGT1Q8N5D6 347 aa8.6□□□□□ -1.03
CUX1-212ENST00000547394 KLF12Q9Y4X4 402 aa8.6□□□□□ -1.03
CUX1-212ENST00000547394 SORL1Q92673 2214 aa8.6□□□□□ -1.03
CUX1-212ENST00000547394 A8MWP6 167 aa8.6□□□□□ -1.03
CUX1-212ENST00000547394 M0QZ24 198 aa8.6□□□□□ -1.03
CUX1-212ENST00000547394 PAX1P15863 534 aa8.6□□□□□ -1.03
CUX1-212ENST00000547394 FAM110DQ8TAY7 271 aaPredicted RBP8.6□□□□□ -1.03
CUX1-212ENST00000547394 ZNF502Q8TBZ5 544 aa8.6□□□□□ -1.03
CUX1-212ENST00000547394 MBD6Q96DN6 1003 aa8.6□□□□□ -1.03
CUX1-212ENST00000547394 KLK15Q9H2R5 256 aa8.6□□□□□ -1.03
CUX1-212ENST00000547394 TMEM14CQ9P0S9 112 aa8.6□□□□□ -1.03
CUX1-212ENST00000547394 RNF114Q9Y508 228 aa8.6□□□□□ -1.03
CUX1-212ENST00000547394 HECTD1Q9ULT8 2610 aa8.6□□□□□ -1.03
CUX1-212ENST00000547394 NIPBLQ6KC79 2804 aaeCLIP8.59□□□□□ -1.033e-10■■■■■ 76.4
CUX1-212ENST00000547394 BMPR1BO00238 502 aa8.59□□□□□ -1.03
CUX1-212ENST00000547394 FMC1Q96HJ9 113 aa8.59□□□□□ -1.03
CUX1-212ENST00000547394 ZNF331Q9NQX6 463 aaPredicted RBP8.59□□□□□ -1.03
CUX1-212ENST00000547394 IGKV3-7A0A075B6H7 116 aa8.59□□□□□ -1.03
CUX1-212ENST00000547394 IZUMO1RA6ND01 250 aa8.59□□□□□ -1.03
CUX1-212ENST00000547394 FOXA3P55318 350 aaPredicted RBP8.59□□□□□ -1.03
CUX1-212ENST00000547394 FAM19A2Q8N3H0 131 aa8.59□□□□□ -1.03
CUX1-212ENST00000547394 DAZAP1Q96EP5 407 aaKnown RBP8.59□□□□□ -1.03
CUX1-212ENST00000547394 RABAC1Q9UI14 185 aa8.59□□□□□ -1.03
CUX1-212ENST00000547394 TRAV41A0A0B4J266 112 aa8.59□□□□□ -1.04
CUX1-212ENST00000547394 PRAC2D3DTV9 90 aa8.59□□□□□ -1.04
CUX1-212ENST00000547394 RNF223E7ERA6 249 aa8.59□□□□□ -1.04
CUX1-212ENST00000547394 PMCHP20382 165 aa8.59□□□□□ -1.04
CUX1-212ENST00000547394 ERCC8Q13216 396 aa8.59□□□□□ -1.04
CUX1-212ENST00000547394 COA6Q5JTJ3 125 aaKnown RBP8.59□□□□□ -1.04
CUX1-212ENST00000547394 C10orf99Q6UWK7 81 aa8.59□□□□□ -1.04
CUX1-212ENST00000547394 GRAMD2BQ96HH9 432 aa8.59□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms