RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 CIB3Q96Q77 187 aaPredicted RBP10.71□□□□□ -0.69
CLSTN3-213ENST00000541953 Q9H8V8 135 aa10.71□□□□□ -0.69
CLSTN3-213ENST00000541953 SCRT2Q9NQ03 307 aa10.71□□□□□ -0.69
CLSTN3-213ENST00000541953 H3BMQ9 156 aa10.7□□□□□ -0.7
CLSTN3-213ENST00000541953 SLC17A3O00476 420 aa10.7□□□□□ -0.7
CLSTN3-213ENST00000541953 IL5P05113 134 aa10.7□□□□□ -0.7
CLSTN3-213ENST00000541953 OR5G3P0C626 314 aa10.7□□□□□ -0.7
CLSTN3-213ENST00000541953 RPL7P18124 248 aaKnown RBP10.7□□□□□ -0.7
CLSTN3-213ENST00000541953 FUSP35637 526 aaKnown RBP eCLIP10.7□□□□□ -0.7
CLSTN3-213ENST00000541953 PLP1P60201 277 aa10.7□□□□□ -0.7
CLSTN3-213ENST00000541953 B2MP61769 119 aa10.7□□□□□ -0.7
CLSTN3-213ENST00000541953 MORN5Q5VZ52 161 aa10.7□□□□□ -0.7
CLSTN3-213ENST00000541953 ZBTB8BQ8NAP8 495 aaPredicted RBP10.7□□□□□ -0.7
CLSTN3-213ENST00000541953 RAB2BQ8WUD1 216 aa10.7□□□□□ -0.7
CLSTN3-213ENST00000541953 RPUSD4Q96CM3 377 aaKnown RBP10.7□□□□□ -0.7
CLSTN3-213ENST00000541953 C16orf74Q96GX8 76 aa10.7□□□□□ -0.7
CLSTN3-213ENST00000541953 STRAPQ9Y3F4 350 aaKnown RBP10.7□□□□□ -0.7
CLSTN3-213ENST00000541953 TIMM8BQ9Y5J9 83 aaPredicted RBP10.7□□□□□ -0.7
CLSTN3-213ENST00000541953 HYPMO75409 117 aa10.69□□□□□ -0.7
CLSTN3-213ENST00000541953 RAP2BP61225 183 aa10.69□□□□□ -0.7
CLSTN3-213ENST00000541953 DLK1P80370 383 aa10.69□□□□□ -0.7
CLSTN3-213ENST00000541953 ID3Q02535 119 aa10.69□□□□□ -0.7
CLSTN3-213ENST00000541953 SLC38A11Q08AI6 406 aa10.69□□□□□ -0.7
CLSTN3-213ENST00000541953 OR5I1Q13606 314 aa10.69□□□□□ -0.7
CLSTN3-213ENST00000541953 ESRGQ1W209 222 aa10.69□□□□□ -0.7
CLSTN3-213ENST00000541953 GFI1BQ5VTD9 330 aa10.69□□□□□ -0.7
CLSTN3-213ENST00000541953 TMEM256Q8N2U0 113 aa10.69□□□□□ -0.7
CLSTN3-213ENST00000541953 TMEM263Q8WUH6 116 aaKnown RBP10.69□□□□□ -0.7
CLSTN3-213ENST00000541953 LINC00854A0A1B0GVQ3 168 aa10.68□□□□□ -0.7
CLSTN3-213ENST00000541953 ZNF701M0R085 212 aaPredicted RBP10.68□□□□□ -0.7
CLSTN3-213ENST00000541953 SSSCA1O60232 199 aa10.68□□□□□ -0.7
CLSTN3-213ENST00000541953 CDKN1BP46527 198 aa10.68□□□□□ -0.7
CLSTN3-213ENST00000541953 ARL16Q0P5N6 197 aa10.68□□□□□ -0.7
CLSTN3-213ENST00000541953 CLINT1Q14677 625 aa10.68□□□□□ -0.7
CLSTN3-213ENST00000541953 TOMM5Q8N4H5 51 aa10.68□□□□□ -0.7
CLSTN3-213ENST00000541953 MCFD2Q8NI22 146 aa10.68□□□□□ -0.7
CLSTN3-213ENST00000541953 ARL6Q9H0F7 186 aa10.68□□□□□ -0.7
CLSTN3-213ENST00000541953 Q9H3A6 140 aa10.68□□□□□ -0.7
CLSTN3-213ENST00000541953 METTL15P1P0C7V9 234 aa10.67□□□□□ -0.7
CLSTN3-213ENST00000541953 TMBIM6P55061 237 aa10.67□□□□□ -0.7
CLSTN3-213ENST00000541953 RPP30P78346 268 aaKnown RBP10.67□□□□□ -0.7
CLSTN3-213ENST00000541953 PYDC2Q56P42 97 aa10.67□□□□□ -0.7
CLSTN3-213ENST00000541953 GNPNAT1Q96EK6 184 aaPredicted RBP10.67□□□□□ -0.7
CLSTN3-213ENST00000541953 ARV1Q9H2C2 271 aa10.67□□□□□ -0.7
CLSTN3-213ENST00000541953 ZNF331Q9NQX6 463 aaPredicted RBP10.67□□□□□ -0.7
CLSTN3-213ENST00000541953 PSENENQ9NZ42 101 aa10.67□□□□□ -0.7
CLSTN3-213ENST00000541953 GAGE12BA1L429 117 aa10.66□□□□□ -0.7
CLSTN3-213ENST00000541953 J3KRW8 73 aa10.66□□□□□ -0.7
CLSTN3-213ENST00000541953 GAGE7O76087 117 aa10.66□□□□□ -0.7
CLSTN3-213ENST00000541953 GAGE12FP0CL80 117 aa10.66□□□□□ -0.7
CLSTN3-213ENST00000541953 GAGE12GP0CL81 117 aa10.66□□□□□ -0.7
CLSTN3-213ENST00000541953 GAGE12IP0CL82 117 aa10.66□□□□□ -0.7
CLSTN3-213ENST00000541953 FAUP35544 74 aaKnown RBP10.66□□□□□ -0.7
CLSTN3-213ENST00000541953 TMEM14EPQ6UXP3 125 aa10.66□□□□□ -0.7
CLSTN3-213ENST00000541953 RXFP4Q8TDU9 374 aa10.66□□□□□ -0.7
CLSTN3-213ENST00000541953 TMPRSS5Q9H3S3 457 aa10.66□□□□□ -0.7
CLSTN3-213ENST00000541953 PPP1R14DQ9NXH3 145 aa10.66□□□□□ -0.7
CLSTN3-213ENST00000541953 ZNF586Q9NXT0 402 aa10.66□□□□□ -0.7
CLSTN3-213ENST00000541953 FLVCR2Q9UPI3 526 aa10.66□□□□□ -0.7
CLSTN3-213ENST00000541953 C9orf170A2RU37 121 aa10.65□□□□□ -0.7
CLSTN3-213ENST00000541953 H7BYZ3 331 aa10.65□□□□□ -0.7
CLSTN3-213ENST00000541953 M6PRP20645 277 aa10.65□□□□□ -0.7
CLSTN3-213ENST00000541953 ZNF493Q6ZR52 646 aa10.65□□□□□ -0.7
CLSTN3-213ENST00000541953 Q6ZRN7 208 aaPredicted RBP10.65□□□□□ -0.7
CLSTN3-213ENST00000541953 LRRC20Q8TCA0 184 aa10.65□□□□□ -0.7
CLSTN3-213ENST00000541953 SLC25A21Q9BQT8 299 aaPredicted RBP10.65□□□□□ -0.7
CLSTN3-213ENST00000541953 UPK3BQ9BT76 320 aa10.65□□□□□ -0.7
CLSTN3-213ENST00000541953 H3BQ15 152 aa10.64□□□□□ -0.71
CLSTN3-213ENST00000541953 K7EPK0 472 aa10.64□□□□□ -0.71
CLSTN3-213ENST00000541953 LINC00315P59091 139 aa10.64□□□□□ -0.71
CLSTN3-213ENST00000541953 Q6ZTI0 123 aa10.64□□□□□ -0.71
CLSTN3-213ENST00000541953 LINC00305Q7Z4B0 112 aa10.64□□□□□ -0.71
CLSTN3-213ENST00000541953 TMEM37Q8WXS4 190 aa10.64□□□□□ -0.71
CLSTN3-213ENST00000541953 VSIG2Q96IQ7 327 aa10.64□□□□□ -0.71
CLSTN3-213ENST00000541953 BCL7BQ9BQE9 202 aa10.64□□□□□ -0.71
CLSTN3-213ENST00000541953 RCL1Q9Y2P8 373 aaKnown RBP10.64□□□□□ -0.71
CLSTN3-213ENST00000541953 MRPS16Q9Y3D3 137 aaKnown RBP10.64□□□□□ -0.71
CLSTN3-213ENST00000541953 DNAH8Q96JB1 4490 aa10.64□□□□□ -0.71
CLSTN3-213ENST00000541953 PIGBOS1A0A0B4J2F0 54 aa10.63□□□□□ -0.71
CLSTN3-213ENST00000541953 CT45A10P0DMU9 189 aa10.63□□□□□ -0.71
CLSTN3-213ENST00000541953 ANXA7P20073 488 aaKnown RBP10.63□□□□□ -0.71
CLSTN3-213ENST00000541953 SELENOTP62341 195 aa10.63□□□□□ -0.71
CLSTN3-213ENST00000541953 OPCMLQ14982 345 aa10.63□□□□□ -0.71
CLSTN3-213ENST00000541953 LCN15Q6UWW0 184 aa10.63□□□□□ -0.71
CLSTN3-213ENST00000541953 CCDC190Q86UF4 302 aa10.63□□□□□ -0.71
CLSTN3-213ENST00000541953 SMIM8Q96KF7 97 aa10.63□□□□□ -0.71
CLSTN3-213ENST00000541953 MGST2Q99735 147 aa10.63□□□□□ -0.71
CLSTN3-213ENST00000541953 TRAV12-3A0A0B4J271 114 aa10.62□□□□□ -0.71
CLSTN3-213ENST00000541953 AGPAT2O15120 278 aa10.62□□□□□ -0.71
CLSTN3-213ENST00000541953 IGLC2P0DOY2 106 aa10.62□□□□□ -0.71
CLSTN3-213ENST00000541953 AP3S2P59780 193 aa10.62□□□□□ -0.71
CLSTN3-213ENST00000541953 UBE2MP61081 183 aaKnown RBP10.62□□□□□ -0.71
CLSTN3-213ENST00000541953 TTC32Q5I0X7 151 aa10.62□□□□□ -0.71
CLSTN3-213ENST00000541953 OR10J6PQ8NGY7 276 aa10.62□□□□□ -0.71
CLSTN3-213ENST00000541953 SAT2Q96F10 170 aaPredicted RBP10.62□□□□□ -0.71
CLSTN3-213ENST00000541953 ZNF503Q96F45 646 aa10.62□□□□□ -0.71
CLSTN3-213ENST00000541953 NPVFQ9HCQ7 196 aa10.62□□□□□ -0.71
CLSTN3-213ENST00000541953 A0A096LPF7 62 aa10.61□□□□□ -0.71
CLSTN3-213ENST00000541953 TRAV5A0A0B4J249 113 aa10.61□□□□□ -0.71
CLSTN3-213ENST00000541953 SCGB1D2O95969 90 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms