RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 OPCMLQ14982 345 aa10.65□□□□□ -0.7
USP28-204ENST00000537642 C10orf113Q5VZT2 155 aa10.65□□□□□ -0.7
USP28-204ENST00000537642 NEU1Q99519 415 aa10.65□□□□□ -0.7
USP28-204ENST00000537642 OR5AC2Q9NZP5 309 aa10.65□□□□□ -0.7
USP28-204ENST00000537642 CELA1Q9UNI1 258 aa10.65□□□□□ -0.7
USP28-204ENST00000537642 IGHV3OR16-12A0A075B7B8 117 aa10.64□□□□□ -0.71
USP28-204ENST00000537642 LY6G6CO95867 125 aa10.64□□□□□ -0.71
USP28-204ENST00000537642 CXCL3P19876 107 aa10.64□□□□□ -0.71
USP28-204ENST00000537642 RPL29P47914 159 aaKnown RBP10.64□□□□□ -0.71
USP28-204ENST00000537642 H2BFSP57053 126 aa10.64□□□□□ -0.71
USP28-204ENST00000537642 NHLH2Q02577 135 aa10.64□□□□□ -0.71
USP28-204ENST00000537642 ATP6V1FQ16864 119 aa10.64□□□□□ -0.71
USP28-204ENST00000537642 LRRC37A5PQ49AS3 106 aa10.64□□□□□ -0.71
USP28-204ENST00000537642 Q6ZRG5 221 aa10.64□□□□□ -0.71
USP28-204ENST00000537642 C1orf158Q8N1D5 194 aa10.64□□□□□ -0.71
USP28-204ENST00000537642 ZNF738Q8NE65 137 aa10.64□□□□□ -0.71
USP28-204ENST00000537642 OR11H7Q8NGC8 314 aa10.64□□□□□ -0.71
USP28-204ENST00000537642 DNAJC4Q9NNZ3 241 aa10.64□□□□□ -0.71
USP28-204ENST00000537642 DNAH6Q9C0G6 4158 aa10.64□□□□□ -0.71
USP28-204ENST00000537642 E5RGE8 158 aa10.63□□□□□ -0.71
USP28-204ENST00000537642 DUSP14O95147 198 aaKnown RBP10.63□□□□□ -0.71
USP28-204ENST00000537642 RLN2P04090 185 aa10.63□□□□□ -0.71
USP28-204ENST00000537642 SNRPCP09234 159 aaKnown RBP10.63□□□□□ -0.71
USP28-204ENST00000537642 CXCL2P19875 107 aa10.63□□□□□ -0.71
USP28-204ENST00000537642 FGF7P21781 194 aa10.63□□□□□ -0.71
USP28-204ENST00000537642 B2MP61769 119 aa10.63□□□□□ -0.71
USP28-204ENST00000537642 CYCSP99999 105 aaKnown RBP10.63□□□□□ -0.71
USP28-204ENST00000537642 PSG3Q16557 428 aa10.63□□□□□ -0.71
USP28-204ENST00000537642 Q6ZTC4 211 aa10.63□□□□□ -0.71
USP28-204ENST00000537642 BPIFA4PQ86YQ2 179 aa10.63□□□□□ -0.71
USP28-204ENST00000537642 LRRC20Q8TCA0 184 aa10.63□□□□□ -0.71
USP28-204ENST00000537642 CHAC2Q8WUX2 184 aa10.63□□□□□ -0.71
USP28-204ENST00000537642 SLC39A9Q9NUM3 307 aa10.63□□□□□ -0.71
USP28-204ENST00000537642 EPPK1P58107 5090 aaKnown RBP10.63□□□□□ -0.71
USP28-204ENST00000537642 TRAV5A0A0B4J249 113 aa10.62□□□□□ -0.71
USP28-204ENST00000537642 SMIM9A6NGZ8 99 aa10.62□□□□□ -0.71
USP28-204ENST00000537642 C11orf94C9JXX5 98 aa10.62□□□□□ -0.71
USP28-204ENST00000537642 PRB4P10163 310 aaPredicted RBP10.62□□□□□ -0.71
USP28-204ENST00000537642 C12orf74Q32Q52 190 aa10.62□□□□□ -0.71
USP28-204ENST00000537642 LCN15Q6UWW0 184 aa10.62□□□□□ -0.71
USP28-204ENST00000537642 OR8A1Q8NGG7 326 aa10.62□□□□□ -0.71
USP28-204ENST00000537642 OR5C1Q8NGR4 320 aa10.62□□□□□ -0.71
USP28-204ENST00000537642 OR1L4Q8NGR5 311 aa10.62□□□□□ -0.71
USP28-204ENST00000537642 C2CD4CQ8TF44 421 aa10.62□□□□□ -0.71
USP28-204ENST00000537642 SLC25A31Q9H0C2 315 aa10.62□□□□□ -0.71
USP28-204ENST00000537642 ZNF331Q9NQX6 463 aaPredicted RBP10.62□□□□□ -0.71
USP28-204ENST00000537642 GOLT1BQ9Y3E0 138 aa10.62□□□□□ -0.71
USP28-204ENST00000537642 PXMP4Q9Y6I8 212 aa10.62□□□□□ -0.71
USP28-204ENST00000537642 H3BQ15 152 aa10.61□□□□□ -0.71
USP28-204ENST00000537642 H3BTX0 84 aa10.61□□□□□ -0.71
USP28-204ENST00000537642 M0R2Z0 102 aa10.61□□□□□ -0.71
USP28-204ENST00000537642 SLC17A3O00476 420 aa10.61□□□□□ -0.71
USP28-204ENST00000537642 CRXO43186 299 aaPredicted RBP10.61□□□□□ -0.71
USP28-204ENST00000537642 SSNA1O43805 119 aa10.61□□□□□ -0.71
USP28-204ENST00000537642 IGLC2P0DOY2 106 aa10.61□□□□□ -0.71
USP28-204ENST00000537642 SPINK13Q1W4C9 94 aa10.61□□□□□ -0.71
USP28-204ENST00000537642 ZNF767PQ75MW2 155 aa10.61□□□□□ -0.71
USP28-204ENST00000537642 PPP1R1CQ8WVI7 109 aa10.61□□□□□ -0.71
USP28-204ENST00000537642 IGF2BP2-AS1Q96M15 143 aa10.61□□□□□ -0.71
USP28-204ENST00000537642 PFDN5Q99471 154 aa10.61□□□□□ -0.71
USP28-204ENST00000537642 SLC50A1Q9BRV3 221 aa10.61□□□□□ -0.71
USP28-204ENST00000537642 NPCDR1Q9BY65 106 aa10.61□□□□□ -0.71
USP28-204ENST00000537642 RFNGQ9Y644 331 aa10.61□□□□□ -0.71
USP28-204ENST00000537642 TMEM189A5PLL7 270 aa10.6□□□□□ -0.71
USP28-204ENST00000537642 MPDU1O75352 247 aa10.6□□□□□ -0.71
USP28-204ENST00000537642 EMP1P54849 157 aa10.6□□□□□ -0.71
USP28-204ENST00000537642 HIST1H1AQ02539 215 aaPredicted RBP10.6□□□□□ -0.71
USP28-204ENST00000537642 THAP6Q8TBB0 222 aa10.6□□□□□ -0.71
USP28-204ENST00000537642 RPUSD4Q96CM3 377 aaKnown RBP10.6□□□□□ -0.71
USP28-204ENST00000537642 SAT2Q96F10 170 aaPredicted RBP10.6□□□□□ -0.71
USP28-204ENST00000537642 RNF126Q9BV68 326 aa10.6□□□□□ -0.71
USP28-204ENST00000537642 TRAV10A0A0B4J240 114 aa10.59□□□□□ -0.71
USP28-204ENST00000537642 IGLL5B9A064 214 aa10.59□□□□□ -0.71
USP28-204ENST00000537642 MPC2O95563 127 aa10.59□□□□□ -0.71
USP28-204ENST00000537642 AMBPP02760 352 aa10.59□□□□□ -0.71
USP28-204ENST00000537642 CLINT1Q14677 625 aa10.59□□□□□ -0.71
USP28-204ENST00000537642 GCSAMLQ5JQS6 135 aa10.59□□□□□ -0.71
USP28-204ENST00000537642 PRAC2D3DTV9 90 aa10.58□□□□□ -0.72
USP28-204ENST00000537642 BOLA2-SMG1P6H3BVE0 249 aa10.58□□□□□ -0.72
USP28-204ENST00000537642 INSP01308 110 aa10.58□□□□□ -0.72
USP28-204ENST00000537642 HBE1P02100 147 aa10.58□□□□□ -0.72
USP28-204ENST00000537642 TCTAP57738 103 aa10.58□□□□□ -0.72
USP28-204ENST00000537642 RHOBP62745 196 aa10.58□□□□□ -0.72
USP28-204ENST00000537642 LGALS9CQ6DKI2 356 aa10.58□□□□□ -0.72
USP28-204ENST00000537642 BAP18Q8IXM2 172 aa10.58□□□□□ -0.72
USP28-204ENST00000537642 ZNF586Q9NXT0 402 aa10.58□□□□□ -0.72
USP28-204ENST00000537642 APLNQ9ULZ1 77 aa10.58□□□□□ -0.72
USP28-204ENST00000537642 TRAV12-2A0A075B6T6 113 aa10.57□□□□□ -0.72
USP28-204ENST00000537642 LOC102723971A0A1B0GUV8 181 aa10.57□□□□□ -0.72
USP28-204ENST00000537642 SPART-AS1P0CW21 52 aa10.57□□□□□ -0.72
USP28-204ENST00000537642 GUK1Q16774 197 aa10.57□□□□□ -0.72
USP28-204ENST00000537642 RRN3P1Q2M238 152 aa10.57□□□□□ -0.72
USP28-204ENST00000537642 TMEM208Q9BTX3 173 aa10.57□□□□□ -0.72
USP28-204ENST00000537642 WDR61Q9GZS3 305 aaKnown RBP10.57□□□□□ -0.72
USP28-204ENST00000537642 DKK2Q9UBU2 259 aa10.57□□□□□ -0.72
USP28-204ENST00000537642 ALG5Q9Y673 324 aa10.57□□□□□ -0.72
USP28-204ENST00000537642 DNAH10Q8IVF4 4471 aa10.57□□□□□ -0.72
USP28-204ENST00000537642 DEFB131BA0A096LNP1 70 aa10.56□□□□□ -0.72
USP28-204ENST00000537642 PRM2P04554 102 aa10.56□□□□□ -0.72
USP28-204ENST00000537642 FAM222AQ5U5X8 452 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 134.6 ms