RNA–Protein interactions for RNA: ENST00000520234.1

HMGB1P41-201, Transcript of high mobility group box 1 pseudogene 41, humanhuman

BASIC

Gene HMGB1P41, Length 440 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P41-201ENST00000520234 SPIN2BQ9BPZ2 258 aa2.18□□□□□ -2.06
HMGB1P41-201ENST00000520234 HDHD3Q9BSH5 251 aaPredicted RBP2.18□□□□□ -2.06
HMGB1P41-201ENST00000520234 DERL1Q9BUN8 251 aa2.18□□□□□ -2.06
HMGB1P41-201ENST00000520234 HES7Q9BYE0 225 aa2.18□□□□□ -2.06
HMGB1P41-201ENST00000520234 OR2H1Q9GZK4 316 aa2.18□□□□□ -2.06
HMGB1P41-201ENST00000520234 WDR61Q9GZS3 305 aaKnown RBP2.18□□□□□ -2.06
HMGB1P41-201ENST00000520234 PRO3102Q9H379 93 aa2.18□□□□□ -2.06
HMGB1P41-201ENST00000520234 ZNF286AQ9HBT8 521 aa2.18□□□□□ -2.06
HMGB1P41-201ENST00000520234 SPANXB1Q9NS25 103 aaPredicted RBP2.18□□□□□ -2.06
HMGB1P41-201ENST00000520234 IL36BQ9NZH7 164 aa2.18□□□□□ -2.06
HMGB1P41-201ENST00000520234 PRO0461Q9UI25 63 aa2.18□□□□□ -2.06
HMGB1P41-201ENST00000520234 POLR1DQ9Y2S0 133 aa2.18□□□□□ -2.06
HMGB1P41-201ENST00000520234 CACNA1DQ01668 2161 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 TNCP24821 2201 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 IGKV1-12A0A0C4DH73 117 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 ZNF816-ZNF321PA0A0X1KG74 233 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 C3orf85A0A1B0GTC6 90 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 SMIM27A0A1W2PRY6 76 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 C7orf71A4D174 169 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 LRP5LA4QPB2 252 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 ZNF850A8MQ14 1090 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 C21orf140B9A014 251 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 H0Y980 276 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 PDE6DO43924 150 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 SSSCA1O60232 199 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 HAND1O96004 215 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 CA1P00915 261 aaPredicted RBP2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 IGKV1-39P01597 117 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 IGKV1D-12P01611 117 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 IGLV2-8P01709 118 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 HBZP02008 142 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 IGKV1D-39P04432 117 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 P04436 131 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 CCL3P10147 92 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 COX8AP10176 69 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 PSG2P11465 335 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 CCNOP22674 350 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 OMGP23515 440 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 APOC4P55056 127 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 RBM11P57052 281 aaKnown RBP2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 CKS1BP61024 79 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 UBE2G1P62253 170 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 COX19Q49B96 90 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 ABCA11PQ4W5N1 156 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 GDF5OSQ5U4N7 250 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 SPATA31B1PQ5VZV4 182 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 CARD17Q5XLA6 110 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 STUMQ69YW2 141 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 C11orf71Q6IPW1 123 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 GUSBP11Q6P575 273 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 RASL11AQ6T310 242 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 SHISA6Q6ZSJ9 500 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 AAED1Q7RTV5 226 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 C6orf201Q7Z4U5 140 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 OR5D13Q8NGL4 314 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 ZNF596Q8TC21 504 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 CT55Q8WUE5 264 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 APOBEC3DQ96AK3 386 aaPredicted RBP2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 BORCS8Q96FH0 119 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 ZC2HC1AQ96GY0 325 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 PGLYRP4Q96LB8 373 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 GPR82Q96P67 336 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 HIST1H4GQ99525 98 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 TXNDC17Q9BRA2 123 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 PKIBQ9C010 78 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 GTSF1LQ9H1H1 148 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 MS4A6AQ9H2W1 248 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 PATZ1Q9HBE1 687 aaKnown RBP2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 KCNIP2Q9NS61 270 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 SIGLEC8Q9NYZ4 499 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 BOKQ9UMX3 212 aaPredicted RBP2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 PSG8Q9UQ74 426 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 TANC2Q9HCD6 1990 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 MED12Q93074 2177 aa2.17□□□□□ -2.06
HMGB1P41-201ENST00000520234 KNL1Q8NG31 2342 aa2.16□□□□□ -2.06
HMGB1P41-201ENST00000520234 A0A087WX48 190 aa2.16□□□□□ -2.06
HMGB1P41-201ENST00000520234 LOC102724200A0A096LPH7 203 aaPredicted RBP2.16□□□□□ -2.06
HMGB1P41-201ENST00000520234 TRGV10A0A0A0MS01 117 aa2.16□□□□□ -2.06
HMGB1P41-201ENST00000520234 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP2.16□□□□□ -2.06
HMGB1P41-201ENST00000520234 TRAV38-1A0A0B4J264 116 aa2.16□□□□□ -2.06
HMGB1P41-201ENST00000520234 IGKV1D-13A0A0B4J2D9 117 aa2.16□□□□□ -2.06
HMGB1P41-201ENST00000520234 IGKV1-6A0A0C4DH72 117 aa2.16□□□□□ -2.06
HMGB1P41-201ENST00000520234 KIR2DS1A0A191URI9 304 aa2.16□□□□□ -2.06
HMGB1P41-201ENST00000520234 A0A1B0GXF2 115 aa2.16□□□□□ -2.06
HMGB1P41-201ENST00000520234 A0A1W2PPM0 123 aa2.16□□□□□ -2.06
HMGB1P41-201ENST00000520234 SLC22A20A6NK97 555 aa2.16□□□□□ -2.06
HMGB1P41-201ENST00000520234 PCNX2A6NKB5 2137 aa2.16□□□□□ -2.06
HMGB1P41-201ENST00000520234 CD300LBA8K4G0 201 aa2.16□□□□□ -2.06
HMGB1P41-201ENST00000520234 C11orf94C9JXX5 98 aa2.16□□□□□ -2.06
HMGB1P41-201ENST00000520234 H0Y8G0 127 aa2.16□□□□□ -2.06
HMGB1P41-201ENST00000520234 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP2.16□□□□□ -2.06
HMGB1P41-201ENST00000520234 SYS1-DBNDD2H3BUS1 97 aa2.16□□□□□ -2.06
HMGB1P41-201ENST00000520234 M0R1X1 148 aa2.16□□□□□ -2.06
HMGB1P41-201ENST00000520234 PGLYRP1O75594 196 aaPredicted RBP2.16□□□□□ -2.06
HMGB1P41-201ENST00000520234 OR7C1O76099 320 aaPredicted RBP2.16□□□□□ -2.06
HMGB1P41-201ENST00000520234 MT-CO2P00403 227 aa2.16□□□□□ -2.06
HMGB1P41-201ENST00000520234 PPYP01298 95 aa2.16□□□□□ -2.06
HMGB1P41-201ENST00000520234 IFNA5P01569 189 aa2.16□□□□□ -2.06
HMGB1P41-201ENST00000520234 IGKV1-5P01602 117 aa2.16□□□□□ -2.06
HMGB1P41-201ENST00000520234 HLA-DQA1P01909 254 aa2.16□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 85.7 ms