RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 DPM3Q9P2X0 92 aa6.3□□□□□ -1.4
LIMCH1-219ENST00000514096 S4R3C0 116 aa6.3□□□□□ -1.4
LIMCH1-219ENST00000514096 DUXBA0A1W2PPF3 345 aa6.3□□□□□ -1.4
LIMCH1-219ENST00000514096 FABP5P3A8MUU1 101 aa6.3□□□□□ -1.4
LIMCH1-219ENST00000514096 C3orf79P0CE67 100 aa6.3□□□□□ -1.4
LIMCH1-219ENST00000514096 EVI2AP22794 236 aa6.3□□□□□ -1.4
LIMCH1-219ENST00000514096 CNTFRP26992 372 aa6.3□□□□□ -1.4
LIMCH1-219ENST00000514096 VDAC2P45880 294 aaPredicted RBP6.3□□□□□ -1.4
LIMCH1-219ENST00000514096 RUNX1Q01196 453 aa6.3□□□□□ -1.4
LIMCH1-219ENST00000514096 DEFB136Q30KP8 78 aa6.3□□□□□ -1.4
LIMCH1-219ENST00000514096 OR5H2Q8NGV7 314 aa6.3□□□□□ -1.4
LIMCH1-219ENST00000514096 SGMS2Q8NHU3 365 aa6.3□□□□□ -1.4
LIMCH1-219ENST00000514096 RPS4Y2Q8TD47 263 aa6.3□□□□□ -1.4
LIMCH1-219ENST00000514096 NBEAL2Q6ZNJ1 2754 aa6.3□□□□□ -1.4
LIMCH1-219ENST00000514096 TRBV5-5A0A0J9YX44 114 aa6.29□□□□□ -1.4
LIMCH1-219ENST00000514096 F2Z2F3 143 aa6.29□□□□□ -1.4
LIMCH1-219ENST00000514096 PDCD6O75340 191 aa6.29□□□□□ -1.4
LIMCH1-219ENST00000514096 IGLL1P15814 213 aa6.29□□□□□ -1.4
LIMCH1-219ENST00000514096 GCSHP23434 173 aa6.29□□□□□ -1.4
LIMCH1-219ENST00000514096 UBE2E1P51965 193 aa6.29□□□□□ -1.4
LIMCH1-219ENST00000514096 IZUMO4Q1ZYL8 232 aa6.29□□□□□ -1.4
LIMCH1-219ENST00000514096 VSTM2AQ8TAG5 236 aa6.29□□□□□ -1.4
LIMCH1-219ENST00000514096 SLC25A33Q9BSK2 321 aa6.29□□□□□ -1.4
LIMCH1-219ENST00000514096 KAAG1Q9UBP8 84 aa6.29□□□□□ -1.4
LIMCH1-219ENST00000514096 ZNF257Q9Y2Q1 563 aa6.29□□□□□ -1.4
LIMCH1-219ENST00000514096 LINC00312Q9Y6C7 94 aa6.29□□□□□ -1.4
LIMCH1-219ENST00000514096 OR4C46A6NHA9 309 aa6.29□□□□□ -1.4
LIMCH1-219ENST00000514096 SNURFLB1AK76 121 aa6.29□□□□□ -1.4
LIMCH1-219ENST00000514096 E9PQ18 207 aa6.29□□□□□ -1.4
LIMCH1-219ENST00000514096 CHST1O43916 411 aa6.29□□□□□ -1.4
LIMCH1-219ENST00000514096 APOMO95445 188 aa6.29□□□□□ -1.4
LIMCH1-219ENST00000514096 REG1AP05451 166 aa6.29□□□□□ -1.4
LIMCH1-219ENST00000514096 ZNF146Q15072 292 aa6.29□□□□□ -1.4
LIMCH1-219ENST00000514096 CRIP3Q6Q6R5 217 aa6.29□□□□□ -1.4
LIMCH1-219ENST00000514096 OR51G1Q8NGK1 321 aa6.29□□□□□ -1.4
LIMCH1-219ENST00000514096 OSR1Q8TAX0 266 aaPredicted RBP6.29□□□□□ -1.4
LIMCH1-219ENST00000514096 GNPNAT1Q96EK6 184 aaPredicted RBP6.29□□□□□ -1.4
LIMCH1-219ENST00000514096 GFI1Q99684 422 aa6.29□□□□□ -1.4
LIMCH1-219ENST00000514096 ST20Q9HBF5 79 aa6.29□□□□□ -1.4
LIMCH1-219ENST00000514096 A0A0A6YYD4 124 aa6.29□□□□□ -1.4
LIMCH1-219ENST00000514096 LINC01548A6NM66 108 aa6.29□□□□□ -1.4
LIMCH1-219ENST00000514096 CTDSPLO15194 276 aa6.29□□□□□ -1.4
LIMCH1-219ENST00000514096 SNCGO76070 127 aa6.29□□□□□ -1.4
LIMCH1-219ENST00000514096 IGHV3-11P01762 117 aa6.29□□□□□ -1.4
LIMCH1-219ENST00000514096 MT-ND6P03923 174 aa6.29□□□□□ -1.4
LIMCH1-219ENST00000514096 RPL35AP18077 110 aaKnown RBP6.29□□□□□ -1.4
LIMCH1-219ENST00000514096 VKORC1L1Q8N0U8 176 aa6.29□□□□□ -1.4
LIMCH1-219ENST00000514096 SPAG8Q99932 426 aaPredicted RBP6.29□□□□□ -1.4
LIMCH1-219ENST00000514096 MAP1LC3AQ9H492 121 aa6.29□□□□□ -1.4
LIMCH1-219ENST00000514096 IDI2-AS1Q9NZ38 188 aa6.29□□□□□ -1.4
LIMCH1-219ENST00000514096 TRAV5A0A0B4J249 113 aa6.28□□□□□ -1.4
LIMCH1-219ENST00000514096 J3QR06 171 aa6.28□□□□□ -1.4
LIMCH1-219ENST00000514096 MPPED1O15442 326 aa6.28□□□□□ -1.4
LIMCH1-219ENST00000514096 CD1AP06126 327 aa6.28□□□□□ -1.4
LIMCH1-219ENST00000514096 GPR183P32249 361 aa6.28□□□□□ -1.4
LIMCH1-219ENST00000514096 ZNF134P52741 427 aa6.28□□□□□ -1.4
LIMCH1-219ENST00000514096 RPS16P62249 146 aaKnown RBP6.28□□□□□ -1.4
LIMCH1-219ENST00000514096 AMTNQ6UX39 209 aa6.28□□□□□ -1.4
LIMCH1-219ENST00000514096 Q6ZSV7 163 aa6.28□□□□□ -1.4
LIMCH1-219ENST00000514096 DEFB125Q8N687 156 aa6.28□□□□□ -1.4
LIMCH1-219ENST00000514096 OR4C13Q8NGP0 309 aa6.28□□□□□ -1.4
LIMCH1-219ENST00000514096 OR51H1Q8NH63 302 aa6.28□□□□□ -1.4
LIMCH1-219ENST00000514096 C2orf50Q96LR7 162 aa6.28□□□□□ -1.4
LIMCH1-219ENST00000514096 GPR82Q96P67 336 aa6.28□□□□□ -1.4
LIMCH1-219ENST00000514096 MS4A6AQ9H2W1 248 aa6.28□□□□□ -1.4
LIMCH1-219ENST00000514096 TRAV9-2A0A087WT02 112 aa6.28□□□□□ -1.4
LIMCH1-219ENST00000514096 IGHV3-35A0A0C4DH35 117 aa6.28□□□□□ -1.4
LIMCH1-219ENST00000514096 K7EP34 96 aa6.28□□□□□ -1.4
LIMCH1-219ENST00000514096 C17orf58Q2M2W7 97 aa6.28□□□□□ -1.4
LIMCH1-219ENST00000514096 CD200R1LQ6Q8B3 271 aa6.28□□□□□ -1.4
LIMCH1-219ENST00000514096 LINC01006Q8NI28 216 aa6.28□□□□□ -1.4
LIMCH1-219ENST00000514096 LINC00477Q96M19 166 aa6.28□□□□□ -1.4
LIMCH1-219ENST00000514096 LOC102723971A0A1B0GUV8 181 aa6.28□□□□□ -1.4
LIMCH1-219ENST00000514096 H3BTX0 84 aa6.28□□□□□ -1.4
LIMCH1-219ENST00000514096 SLC17A2O00624 439 aa6.28□□□□□ -1.4
LIMCH1-219ENST00000514096 HBE1P02100 147 aa6.28□□□□□ -1.4
LIMCH1-219ENST00000514096 IL3RAP26951 378 aa6.28□□□□□ -1.4
LIMCH1-219ENST00000514096 INSL3P51460 131 aa6.28□□□□□ -1.4
LIMCH1-219ENST00000514096 MRPL54Q6P161 138 aaKnown RBP6.28□□□□□ -1.4
LIMCH1-219ENST00000514096 SCGB1C1Q8TD33 95 aa6.28□□□□□ -1.4
LIMCH1-219ENST00000514096 MRPL18Q9H0U6 180 aaKnown RBP6.28□□□□□ -1.4
LIMCH1-219ENST00000514096 FBXL15Q9H469 300 aa6.28□□□□□ -1.4
LIMCH1-219ENST00000514096 PLA2G2EQ9NZK7 142 aa6.28□□□□□ -1.4
LIMCH1-219ENST00000514096 TRBV5-7A0A0A0MS05 114 aa6.27□□□□□ -1.41
LIMCH1-219ENST00000514096 TMEM50BP56557 158 aa6.27□□□□□ -1.41
LIMCH1-219ENST00000514096 SAMD5Q5TGI4 173 aa6.27□□□□□ -1.41
LIMCH1-219ENST00000514096 OR5A1Q8NGJ0 315 aa6.27□□□□□ -1.41
LIMCH1-219ENST00000514096 OR9G1Q8NH87 305 aa6.27□□□□□ -1.41
LIMCH1-219ENST00000514096 C10orf35Q96D05 121 aa6.27□□□□□ -1.41
LIMCH1-219ENST00000514096 KIR2DL4Q99706 377 aa6.27□□□□□ -1.41
LIMCH1-219ENST00000514096 ATP5LO75964 103 aa6.27□□□□□ -1.41
LIMCH1-219ENST00000514096 SMIM17P0DL12 118 aa6.27□□□□□ -1.41
LIMCH1-219ENST00000514096 LINC00694P0DN24 101 aa6.27□□□□□ -1.41
LIMCH1-219ENST00000514096 KIR3DS1Q14943 382 aa6.27□□□□□ -1.41
LIMCH1-219ENST00000514096 SP6Q3SY56 376 aa6.27□□□□□ -1.41
LIMCH1-219ENST00000514096 HCP5Q6MZN7 132 aa6.27□□□□□ -1.41
LIMCH1-219ENST00000514096 FAM19A5Q7Z5A7 132 aaPredicted RBP6.27□□□□□ -1.41
LIMCH1-219ENST00000514096 RITA1Q96K30 269 aa6.27□□□□□ -1.41
LIMCH1-219ENST00000514096 Q96M66 194 aa6.27□□□□□ -1.41
LIMCH1-219ENST00000514096 GGTLC1Q9BX51 225 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms