RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 EBLN2Q6P2I7 272 aa12.76□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 HIGD1AQ9Y241 93 aa12.76□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 FBN2P35556 2912 aa12.75□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 LY6LH3BQJ8 138 aa12.75□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 CT83Q5H943 113 aa12.75□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 LCN12Q6JVE5 192 aa12.75□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 ITLN2Q8WWU7 325 aaPredicted RBP12.75□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 SRSF12Q8WXF0 261 aaKnown RBP12.75□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 FAM181BA6NEQ2 426 aa12.74□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 HSBP1O75506 76 aa12.74□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 COX7A1P24310 79 aa12.74□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 HBBP68871 147 aa12.74□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 UNQ5815/PRO19632Q6UWF5 114 aa12.74□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 Q6ZN92 141 aa12.74□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 Q71RC1 249 aaPredicted RBP12.74□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 TXN2Q99757 166 aa12.74□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 SLC25A39Q9BZJ4 359 aaPredicted RBP12.74□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 TMEM14CQ9P0S9 112 aa12.74□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 PTPN13Q12923 2485 aa12.74□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 A8MWL6 223 aa12.74□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 CD3EP07766 207 aa12.74□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 LYZP61626 148 aa12.74□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 OTORQ9NRC9 128 aa12.74□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 PPIAL4CA0A0B4J2A2 164 aa12.73□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 IGLV2-11P01706 119 aa12.73□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 P01737 135 aa12.73□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 PPIAL4GP0DN37 164 aa12.73□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 KLHDC1Q8N7A1 406 aa12.73□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 OR8B3Q8NGG8 313 aa12.73□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 PGLYRP4Q96LB8 373 aa12.73□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 OR8B2Q96RD0 313 aa12.73□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 RNF24Q9Y225 148 aa12.73□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 TRAV8-1A0A0A6YYK1 113 aa12.73□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 C2orf70A6NJV1 201 aa12.73□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 NPIPB6E9PJ23 425 aa12.73□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 M0R2Z0 102 aa12.73□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 HOXB4P17483 251 aaPredicted RBP12.73□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 CD24P25063 80 aa12.73□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 RNASEKQ6P5S7 137 aaKnown RBP12.73□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 Q86TA4 180 aa12.73□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 ATOH7Q8N100 152 aa12.73□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 RPEQ96AT9 228 aa12.73□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 OVOL3O00110 214 aa12.72□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 IGKV1-17P01599 117 aa12.72□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 RBP4P02753 201 aa12.72□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 VAMP3Q15836 100 aa12.72□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 EXOC3-AS1Q8N2X6 119 aa12.72□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 KIR3DL3Q8N743 410 aa12.72□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 GFRA4Q9GZZ7 299 aa12.72□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 ZNF785A8K8V0 405 aa12.72□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 SPATA12Q7Z6I5 190 aa12.72□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 CIARTQ8N365 385 aaPredicted RBP12.72□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 SOX21Q9Y651 276 aaPredicted RBP12.72□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 FAM120AOSQ5T036 256 aa12.71□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 RNF5Q99942 180 aa12.71□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 K7EIM0 57 aa12.7□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 PLA2G2AP14555 144 aa12.7□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 PMCHL1Q16048 86 aa12.7□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 RBPMS2Q6ZRY4 209 aaKnown RBP12.7□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 RASL11BQ9BPW5 248 aa12.7□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 SH2D7A6NKC9 451 aaPredicted RBP12.7□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 COL8A1P27658 744 aa12.7□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 FOXA3P55318 350 aaPredicted RBP12.7□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 GOLT1AQ6ZVE7 132 aa12.7□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 MUC15Q8N387 334 aa12.7□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 DAZAP1Q96EP5 407 aaKnown RBP12.7□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 FAM231BA6NCW3 169 aa12.69□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 TIMM23O14925 209 aa12.69□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 TOX4O94842 621 aa12.69□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 APOHP02749 345 aaPredicted RBP12.69□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 HIST2H2BCQ6DN03 193 aa12.69□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 C17orf77Q96MU5 243 aa12.69□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 SRSF8Q9BRL6 282 aaKnown RBP12.69□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 TRBV6-1A0A0K0K1D8 114 aa12.69□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 TSPOP30536 169 aa12.69□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 PLGLAQ15195 96 aa12.69□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 Q56UQ5 140 aa12.69□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 PRNTQ86SH4 94 aa12.69□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 LY6G5BQ8NDX9 201 aa12.69□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 CLEC5AQ9NY25 188 aa12.69□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 ZNF672Q499Z4 452 aaPredicted RBP12.68□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 Q6ZVH6 145 aa12.68□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 SHANK2-AS3Q9BTD1 123 aa12.68□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 ARHGAP32A7KAX9 2087 aa12.68□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 TRBV19A0A075B6N1 114 aa12.68□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 TRAV9-2A0A087WT02 112 aa12.68□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 H3BRN7 92 aa12.68□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 HINT1P49773 126 aaPredicted RBP12.68□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 IGFBPL1Q8WX77 278 aa12.68□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 ONECUT1Q9UBC0 465 aa12.68□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 CNIH1O95406 144 aa12.67□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 SCGB1A1P11684 91 aa12.67□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 CFHR4Q92496 578 aa12.67□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 MEGF9Q9H1U4 602 aa12.67□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 SMPXQ9UHP9 88 aa12.67□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 LOC102724200A0A096LPH7 203 aaPredicted RBP12.66□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 IGHV1-24A0A0C4DH33 117 aa12.66□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 HAX1O00165 279 aa12.66□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 MRPS12O15235 138 aaKnown RBP12.66□□□□□ -0.38
MSH5-SAPCD1-208ENST00000498473 SIGLEC15Q6ZMC9 328 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 92 ms