RNA–Protein interactions for RNA: ENST00000462673.1

USP4-207, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 709 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-207ENST00000462673 PRNDQ9UKY0 176 aa6.11□□□□□ -1.43
USP4-207ENST00000462673 TSSC4Q9Y5U2 329 aaPredicted RBP6.11□□□□□ -1.43
USP4-207ENST00000462673 IGHV7-81A0A0B4J1V7 117 aa6.1□□□□□ -1.43
USP4-207ENST00000462673 A0A1W2PN81 502 aa6.1□□□□□ -1.43
USP4-207ENST00000462673 SRRM4A7MD48 611 aaKnown RBP6.1□□□□□ -1.43
USP4-207ENST00000462673 H3BUA1 57 aa6.1□□□□□ -1.43
USP4-207ENST00000462673 RAMP3O60896 148 aa6.1□□□□□ -1.43
USP4-207ENST00000462673 IGLV2-23P01705 113 aa6.1□□□□□ -1.43
USP4-207ENST00000462673 GPX1P07203 203 aa6.1□□□□□ -1.43
USP4-207ENST00000462673 CRYGBP07316 175 aa6.1□□□□□ -1.43
USP4-207ENST00000462673 SAA1P0DJI8 122 aaPredicted RBP6.1□□□□□ -1.43
USP4-207ENST00000462673 CNTFRP26992 372 aa6.1□□□□□ -1.43
USP4-207ENST00000462673 CDKN1BP46527 198 aa6.1□□□□□ -1.43
USP4-207ENST00000462673 TFPI2P48307 235 aa6.1□□□□□ -1.43
USP4-207ENST00000462673 GNG4P50150 75 aa6.1□□□□□ -1.43
USP4-207ENST00000462673 CRIP2P52943 208 aaPredicted RBP6.1□□□□□ -1.43
USP4-207ENST00000462673 PTTG1IPP53801 180 aa6.1□□□□□ -1.43
USP4-207ENST00000462673 RPS20P60866 119 aaKnown RBP6.1□□□□□ -1.43
USP4-207ENST00000462673 RAB31Q13636 194 aa6.1□□□□□ -1.43
USP4-207ENST00000462673 CENPWQ5EE01 88 aa6.1□□□□□ -1.43
USP4-207ENST00000462673 FAM162BQ5T6X4 162 aa6.1□□□□□ -1.43
USP4-207ENST00000462673 OR4A47Q6IF82 309 aa6.1□□□□□ -1.43
USP4-207ENST00000462673 RASL11AQ6T310 242 aa6.1□□□□□ -1.43
USP4-207ENST00000462673 UNQ5815/PRO19632Q6UWF5 114 aa6.1□□□□□ -1.43
USP4-207ENST00000462673 OR4F17Q8NGA8 305 aa6.1□□□□□ -1.43
USP4-207ENST00000462673 OR52E5Q8NH55 327 aa6.1□□□□□ -1.43
USP4-207ENST00000462673 OCC1Q8TAD7 63 aa6.1□□□□□ -1.43
USP4-207ENST00000462673 C5orf30Q96GV9 206 aa6.1□□□□□ -1.43
USP4-207ENST00000462673 FAM103A1Q9BTL3 118 aaKnown RBP6.1□□□□□ -1.43
USP4-207ENST00000462673 OSTCQ9NRP0 149 aa6.1□□□□□ -1.43
USP4-207ENST00000462673 ZNF355PQ9NSJ1 428 aa6.1□□□□□ -1.43
USP4-207ENST00000462673 FOXA2Q9Y261 457 aaPredicted RBP6.1□□□□□ -1.43
USP4-207ENST00000462673 MRPS16Q9Y3D3 137 aaKnown RBP6.1□□□□□ -1.43
USP4-207ENST00000462673 YTHDF2Q9Y5A9 579 aaKnown RBP6.1□□□□□ -1.43
USP4-207ENST00000462673 COX11Q9Y6N1 276 aa6.1□□□□□ -1.43
USP4-207ENST00000462673 V9GYV3 84 aa6.1□□□□□ -1.43
USP4-207ENST00000462673 CUBNO60494 3623 aa6.1□□□□□ -1.43
USP4-207ENST00000462673 FNDC10F2Z333 226 aa6.09□□□□□ -1.43
USP4-207ENST00000462673 K7EN84 100 aa6.09□□□□□ -1.43
USP4-207ENST00000462673 K7EP13 123 aa6.09□□□□□ -1.43
USP4-207ENST00000462673 UPK2O00526 184 aa6.09□□□□□ -1.43
USP4-207ENST00000462673 ATP6V0E1O15342 81 aa6.09□□□□□ -1.43
USP4-207ENST00000462673 HYPMO75409 117 aa6.09□□□□□ -1.43
USP4-207ENST00000462673 BRI3O95415 125 aa6.09□□□□□ -1.43
USP4-207ENST00000462673 IGHG4P01861 327 aa6.09□□□□□ -1.43
USP4-207ENST00000462673 DEFA4P12838 97 aa6.09□□□□□ -1.43
USP4-207ENST00000462673 RPL27AP46776 148 aaKnown RBP6.09□□□□□ -1.43
USP4-207ENST00000462673 SUB1P53999 127 aaKnown RBP eCLIP6.09□□□□□ -1.43
USP4-207ENST00000462673 ERHP84090 104 aaKnown RBP6.09□□□□□ -1.43
USP4-207ENST00000462673 TIGITQ495A1 244 aa6.09□□□□□ -1.43
USP4-207ENST00000462673 TMEM136Q6ZRR5 245 aa6.09□□□□□ -1.43
USP4-207ENST00000462673 Q6ZS46 218 aa6.09□□□□□ -1.43
USP4-207ENST00000462673 OR8I2Q8N0Y5 310 aa6.09□□□□□ -1.43
USP4-207ENST00000462673 SLC24A4Q8NFF2 622 aa6.09□□□□□ -1.43
USP4-207ENST00000462673 OR1L8Q8NGR8 309 aa6.09□□□□□ -1.43
USP4-207ENST00000462673 SRSF12Q8WXF0 261 aaKnown RBP6.09□□□□□ -1.43
USP4-207ENST00000462673 USMG5Q96IX5 58 aa6.09□□□□□ -1.43
USP4-207ENST00000462673 UBE2E2Q96LR5 201 aa6.09□□□□□ -1.43
USP4-207ENST00000462673 MGST2Q99735 147 aa6.09□□□□□ -1.43
USP4-207ENST00000462673 ZNF430Q9H8G1 570 aaPredicted RBP6.09□□□□□ -1.43
USP4-207ENST00000462673 ENY2Q9NPA8 101 aa6.09□□□□□ -1.43
USP4-207ENST00000462673 HEYLQ9NQ87 328 aaPredicted RBP6.09□□□□□ -1.43
USP4-207ENST00000462673 TMEM140Q9NV12 185 aa6.09□□□□□ -1.43
USP4-207ENST00000462673 ZNF257Q9Y2Q1 563 aa6.09□□□□□ -1.43
USP4-207ENST00000462673 SH2D7A6NKC9 451 aaPredicted RBP6.08□□□□□ -1.44
USP4-207ENST00000462673 PRSS46E5RG02 174 aa6.08□□□□□ -1.44
USP4-207ENST00000462673 F2Z2F3 143 aa6.08□□□□□ -1.44
USP4-207ENST00000462673 SLC17A3O00476 420 aa6.08□□□□□ -1.44
USP4-207ENST00000462673 NDUFB8O95169 186 aa6.08□□□□□ -1.44
USP4-207ENST00000462673 C3orf79P0CE67 100 aa6.08□□□□□ -1.44
USP4-207ENST00000462673 PF4V1P10720 104 aa6.08□□□□□ -1.44
USP4-207ENST00000462673 PPIFP30405 207 aaKnown RBP6.08□□□□□ -1.44
USP4-207ENST00000462673 SRIP30626 198 aa6.08□□□□□ -1.44
USP4-207ENST00000462673 RAB9AP51151 201 aa6.08□□□□□ -1.44
USP4-207ENST00000462673 BRWD1-AS2P59051 145 aa6.08□□□□□ -1.44
USP4-207ENST00000462673 TAS2R45P59539 299 aa6.08□□□□□ -1.44
USP4-207ENST00000462673 UBE2V1Q13404 147 aa6.08□□□□□ -1.44
USP4-207ENST00000462673 ECSCRQ19T08 205 aa6.08□□□□□ -1.44
USP4-207ENST00000462673 GCSAMLQ5JQS6 135 aa6.08□□□□□ -1.44
USP4-207ENST00000462673 KHDC1LQ5JSQ8 128 aa6.08□□□□□ -1.44
USP4-207ENST00000462673 MIC13Q5XKP0 118 aa6.08□□□□□ -1.44
USP4-207ENST00000462673 TREML4Q6UXN2 200 aa6.08□□□□□ -1.44
USP4-207ENST00000462673 SMIM15Q7Z3B0 74 aa6.08□□□□□ -1.44
USP4-207ENST00000462673 ZNF329Q86UD4 541 aa6.08□□□□□ -1.44
USP4-207ENST00000462673 VKORC1L1Q8N0U8 176 aa6.08□□□□□ -1.44
USP4-207ENST00000462673 TTC9CQ8N5M4 171 aa6.08□□□□□ -1.44
USP4-207ENST00000462673 STPG3Q8N7X2 389 aa6.08□□□□□ -1.44
USP4-207ENST00000462673 STPG4Q8N801 248 aa6.08□□□□□ -1.44
USP4-207ENST00000462673 WIPF2Q8TF74 440 aaPredicted RBP6.08□□□□□ -1.44
USP4-207ENST00000462673 ALKBH7Q9BT30 221 aaPredicted RBP6.08□□□□□ -1.44
USP4-207ENST00000462673 OR51B2Q9Y5P1 312 aa6.08□□□□□ -1.44
USP4-207ENST00000462673 TRAV9-2A0A087WT02 112 aa6.07□□□□□ -1.44
USP4-207ENST00000462673 A0A1W2PS18 150 aa6.07□□□□□ -1.44
USP4-207ENST00000462673 IZUMO1RA6ND01 250 aa6.07□□□□□ -1.44
USP4-207ENST00000462673 LINC01548A6NM66 108 aa6.07□□□□□ -1.44
USP4-207ENST00000462673 ISLRO14498 428 aa6.07□□□□□ -1.44
USP4-207ENST00000462673 IGLV1-40P01703 118 aa6.07□□□□□ -1.44
USP4-207ENST00000462673 APCSP02743 223 aa6.07□□□□□ -1.44
USP4-207ENST00000462673 PPBPP02775 128 aa6.07□□□□□ -1.44
USP4-207ENST00000462673 OR9G9P0C7N8 305 aa6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 225.9 ms