RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 CMTM2Q8TAZ6 248 aa7.64□□□□□ -1.19
CD44-207ENST00000425428 MANBALQ9NQG1 85 aa7.64□□□□□ -1.19
CD44-207ENST00000425428 A0A087X0K7 114 aa7.64□□□□□ -1.19
CD44-207ENST00000425428 TRAV1-1A0A0B4J248 108 aa7.64□□□□□ -1.19
CD44-207ENST00000425428 A0A1B0GV50 99 aa7.64□□□□□ -1.19
CD44-207ENST00000425428 FHITP49789 147 aa7.64□□□□□ -1.19
CD44-207ENST00000425428 LYPD1Q8N2G4 141 aa7.64□□□□□ -1.19
CD44-207ENST00000425428 MS4A6AQ9H2W1 248 aa7.64□□□□□ -1.19
CD44-207ENST00000425428 PRELID1Q9Y255 219 aa7.64□□□□□ -1.19
CD44-207ENST00000425428 SORL1Q92673 2214 aa7.63□□□□□ -1.19
CD44-207ENST00000425428 F6UZH7 168 aa7.63□□□□□ -1.19
CD44-207ENST00000425428 K7EQM0 130 aa7.63□□□□□ -1.19
CD44-207ENST00000425428 ISLRO14498 428 aa7.63□□□□□ -1.19
CD44-207ENST00000425428 ZNF253O75346 499 aa7.63□□□□□ -1.19
CD44-207ENST00000425428 PYYP10082 97 aa7.63□□□□□ -1.19
CD44-207ENST00000425428 GP9P14770 177 aa7.63□□□□□ -1.19
CD44-207ENST00000425428 TMEM61Q8N0U2 210 aa7.63□□□□□ -1.19
CD44-207ENST00000425428 FAM167A-AS1Q96KT0 104 aa7.63□□□□□ -1.19
CD44-207ENST00000425428 LINC00052Q96N35 136 aa7.63□□□□□ -1.19
CD44-207ENST00000425428 RANP62826 216 aaKnown RBP7.62□□□□□ -1.19
CD44-207ENST00000425428 MORN5Q5VZ52 161 aa7.62□□□□□ -1.19
CD44-207ENST00000425428 CST9LP1Q5W188 147 aa7.62□□□□□ -1.19
CD44-207ENST00000425428 FAM90A2PQ658T7 463 aa7.62□□□□□ -1.19
CD44-207ENST00000425428 RXFP4Q8TDU9 374 aa7.62□□□□□ -1.19
CD44-207ENST00000425428 ZNF414Q96IQ9 312 aa7.62□□□□□ -1.19
CD44-207ENST00000425428 TXNDC17Q9BRA2 123 aa7.62□□□□□ -1.19
CD44-207ENST00000425428 GNG13Q9P2W3 67 aa7.62□□□□□ -1.19
CD44-207ENST00000425428 ARL2-SNX15V9GYD0 113 aa7.62□□□□□ -1.19
CD44-207ENST00000425428 TRBV19A0A075B6N1 114 aa7.61□□□□□ -1.19
CD44-207ENST00000425428 IGLC2P0DOY2 106 aa7.61□□□□□ -1.19
CD44-207ENST00000425428 EDN2P20800 178 aa7.61□□□□□ -1.19
CD44-207ENST00000425428 ZNF726P1Q15940 193 aa7.61□□□□□ -1.19
CD44-207ENST00000425428 FXYD5Q96DB9 178 aa7.61□□□□□ -1.19
CD44-207ENST00000425428 ZNF586Q9NXT0 402 aa7.61□□□□□ -1.19
CD44-207ENST00000425428 A0A1W2PRE2 83 aa7.61□□□□□ -1.19
CD44-207ENST00000425428 UBE2G2P60604 165 aa7.61□□□□□ -1.19
CD44-207ENST00000425428 EBLN2Q6P2I7 272 aa7.61□□□□□ -1.19
CD44-207ENST00000425428 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa7.61□□□□□ -1.19
CD44-207ENST00000425428 ADAMTSL5Q6ZMM2 481 aa7.61□□□□□ -1.19
CD44-207ENST00000425428 ZNF738Q8NE65 137 aa7.61□□□□□ -1.19
CD44-207ENST00000425428 SUN5Q8TC36 379 aa7.61□□□□□ -1.19
CD44-207ENST00000425428 EIF5A2Q9GZV4 153 aaKnown RBP7.61□□□□□ -1.19
CD44-207ENST00000425428 OTORQ9NRC9 128 aa7.61□□□□□ -1.19
CD44-207ENST00000425428 PPP1R14DQ9NXH3 145 aa7.61□□□□□ -1.19
CD44-207ENST00000425428 ZNF256Q9Y2P7 627 aaPredicted RBP7.61□□□□□ -1.19
CD44-207ENST00000425428 SELENOKQ9Y6D0 94 aa7.61□□□□□ -1.19
CD44-207ENST00000425428 NOTCH3Q9UM47 2321 aa7.6□□□□□ -1.19
CD44-207ENST00000425428 OR11H12B2RN74 326 aa7.6□□□□□ -1.19
CD44-207ENST00000425428 H3BQ15 152 aa7.6□□□□□ -1.19
CD44-207ENST00000425428 EIF3GO75821 320 aaKnown RBP eCLIP7.6□□□□□ -1.19
CD44-207ENST00000425428 SLC25A5P05141 298 aaKnown RBP7.6□□□□□ -1.19
CD44-207ENST00000425428 SNRPCP09234 159 aaKnown RBP7.6□□□□□ -1.19
CD44-207ENST00000425428 TCEAL7Q9BRU2 100 aa7.6□□□□□ -1.19
CD44-207ENST00000425428 Q9H3A6 140 aa7.6□□□□□ -1.19
CD44-207ENST00000425428 ZNF331Q9NQX6 463 aaPredicted RBP7.6□□□□□ -1.19
CD44-207ENST00000425428 PLA2G2EQ9NZK7 142 aa7.6□□□□□ -1.19
CD44-207ENST00000425428 SMAD5-AS1Q9Y6J3 95 aa7.6□□□□□ -1.19
CD44-207ENST00000425428 PGPA6NDG6 321 aa7.59□□□□□ -1.19
CD44-207ENST00000425428 H3BTX0 84 aa7.59□□□□□ -1.19
CD44-207ENST00000425428 K7EQG2 157 aa7.59□□□□□ -1.19
CD44-207ENST00000425428 MRPS12O15235 138 aaKnown RBP7.59□□□□□ -1.19
CD44-207ENST00000425428 WIPF1O43516 503 aa7.59□□□□□ -1.19
CD44-207ENST00000425428 ZNF688P0C7X2 276 aa7.59□□□□□ -1.19
CD44-207ENST00000425428 CD81P60033 236 aa7.59□□□□□ -1.19
CD44-207ENST00000425428 ICAM4Q14773 271 aa7.59□□□□□ -1.19
CD44-207ENST00000425428 PSMG4Q5JS54 123 aa7.59□□□□□ -1.19
CD44-207ENST00000425428 CLLU1Q5K131 121 aa7.59□□□□□ -1.19
CD44-207ENST00000425428 SSX7Q7RTT5 188 aa7.59□□□□□ -1.19
CD44-207ENST00000425428 OR10J6PQ8NGY7 276 aa7.59□□□□□ -1.19
CD44-207ENST00000425428 MRPL53Q96EL3 112 aaKnown RBP7.59□□□□□ -1.19
CD44-207ENST00000425428 TMPRSS5Q9H3S3 457 aa7.59□□□□□ -1.19
CD44-207ENST00000425428 SERTM2A0A1B0GWG4 89 aa7.59□□□□□ -1.2
CD44-207ENST00000425428 PAGE4O60829 102 aa7.59□□□□□ -1.2
CD44-207ENST00000425428 SUMO1P63165 101 aaKnown RBP7.59□□□□□ -1.2
CD44-207ENST00000425428 PMS2P11Q13670 270 aa7.59□□□□□ -1.2
CD44-207ENST00000425428 PEA15Q15121 130 aa7.59□□□□□ -1.2
CD44-207ENST00000425428 PSG3Q16557 428 aa7.59□□□□□ -1.2
CD44-207ENST00000425428 OXLD1Q5BKU9 147 aa7.59□□□□□ -1.2
CD44-207ENST00000425428 ARL6IP6Q8N6S5 226 aa7.59□□□□□ -1.2
CD44-207ENST00000425428 C5orf17Q8NAS9 161 aa7.59□□□□□ -1.2
CD44-207ENST00000425428 DCANP1Q8TF63 244 aa7.59□□□□□ -1.2
CD44-207ENST00000425428 ZNF503Q96F45 646 aa7.59□□□□□ -1.2
CD44-207ENST00000425428 VAX2Q9UIW0 290 aa7.59□□□□□ -1.2
CD44-207ENST00000425428 C11orf94C9JXX5 98 aa7.58□□□□□ -1.2
CD44-207ENST00000425428 RGS13O14921 159 aa7.58□□□□□ -1.2
CD44-207ENST00000425428 PDE6DO43924 150 aa7.58□□□□□ -1.2
CD44-207ENST00000425428 DUSP14O95147 198 aaKnown RBP7.58□□□□□ -1.2
CD44-207ENST00000425428 HAGHQ16775 308 aa7.58□□□□□ -1.2
CD44-207ENST00000425428 HIST1H2BAQ96A08 127 aa7.58□□□□□ -1.2
CD44-207ENST00000425428 RPUSD4Q96CM3 377 aaKnown RBP7.58□□□□□ -1.2
CD44-207ENST00000425428 C17orf77Q96MU5 243 aa7.58□□□□□ -1.2
CD44-207ENST00000425428 FAM110AQ9BQ89 295 aa7.58□□□□□ -1.2
CD44-207ENST00000425428 RPH3ALQ9UNE2 315 aa7.58□□□□□ -1.2
CD44-207ENST00000425428 IZUMO1RA6ND01 250 aa7.57□□□□□ -1.2
CD44-207ENST00000425428 RBFOX3A6NFN3 312 aa7.57□□□□□ -1.2
CD44-207ENST00000425428 FBLL1A6NHQ2 334 aaKnown RBP7.57□□□□□ -1.2
CD44-207ENST00000425428 FAM74A7A6NL05 159 aa7.57□□□□□ -1.2
CD44-207ENST00000425428 NMBP08949 121 aa7.57□□□□□ -1.2
CD44-207ENST00000425428 BCL2P10415 239 aa7.57□□□□□ -1.2
CD44-207ENST00000425428 DEFB131AP59861 70 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 103.6 ms