RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 ARFGEF3Q5TH69 2177 aa2.77□□□□□ -1.97
SYNE1-212ENST00000423061 TRAV40A0A0B4J280 105 aa2.77□□□□□ -1.97
SYNE1-212ENST00000423061 CXCL12P48061 93 aa2.77□□□□□ -1.97
SYNE1-212ENST00000423061 HBDP02042 147 aa2.77□□□□□ -1.97
SYNE1-212ENST00000423061 CELA2BP08218 269 aaPredicted RBP2.77□□□□□ -1.97
SYNE1-212ENST00000423061 LIFP15018 202 aa2.77□□□□□ -1.97
SYNE1-212ENST00000423061 CTGFP29279 349 aa2.77□□□□□ -1.97
SYNE1-212ENST00000423061 FGF12P61328 243 aa2.77□□□□□ -1.97
SYNE1-212ENST00000423061 TMEM42Q69YG0 159 aa2.77□□□□□ -1.97
SYNE1-212ENST00000423061 TMEM54Q969K7 222 aa2.77□□□□□ -1.97
SYNE1-212ENST00000423061 HS3ST6Q96QI5 342 aa2.77□□□□□ -1.97
SYNE1-212ENST00000423061 DCTN5Q9BTE1 182 aa2.77□□□□□ -1.97
SYNE1-212ENST00000423061 VEGFBP49765 207 aa2.77□□□□□ -1.97
SYNE1-212ENST00000423061 C15orf62A8K5M9 175 aa2.77□□□□□ -1.97
SYNE1-212ENST00000423061 HAX1O00165 279 aa2.77□□□□□ -1.97
SYNE1-212ENST00000423061 PYYP10082 97 aa2.77□□□□□ -1.97
SYNE1-212ENST00000423061 PEBP1P30086 187 aaKnown RBP2.77□□□□□ -1.97
SYNE1-212ENST00000423061 C11orf1Q9H5F2 150 aa2.77□□□□□ -1.97
SYNE1-212ENST00000423061 C2orf83Q53S99 150 aa2.77□□□□□ -1.97
SYNE1-212ENST00000423061 EXOC3-AS1Q8N2X6 119 aa2.77□□□□□ -1.97
SYNE1-212ENST00000423061 TMEM243Q9BU79 118 aa2.77□□□□□ -1.97
SYNE1-212ENST00000423061 ZNF493Q6ZR52 646 aa2.77□□□□□ -1.97
SYNE1-212ENST00000423061 LINC01548A6NM66 108 aa2.77□□□□□ -1.97
SYNE1-212ENST00000423061 F5H697 171 aa2.77□□□□□ -1.97
SYNE1-212ENST00000423061 TMEM219Q86XT9 240 aa2.77□□□□□ -1.97
SYNE1-212ENST00000423061 SFTPA2Q8IWL1 248 aa2.77□□□□□ -1.97
SYNE1-212ENST00000423061 SFTPA1Q8IWL2 248 aa2.77□□□□□ -1.97
SYNE1-212ENST00000423061 IGKV1D-43A0A0B4J1Z2 117 aa2.77□□□□□ -1.97
SYNE1-212ENST00000423061 SMIM10L1P0DMW3 83 aa2.77□□□□□ -1.97
SYNE1-212ENST00000423061 TCF15Q12870 199 aa2.77□□□□□ -1.97
SYNE1-212ENST00000423061 TEPPQ6URK8 271 aa2.77□□□□□ -1.97
SYNE1-212ENST00000423061 MAPKAPK5-AS1Q8N8E1 139 aa2.77□□□□□ -1.97
SYNE1-212ENST00000423061 SMIM10Q96HG1 83 aa2.77□□□□□ -1.97
SYNE1-212ENST00000423061 CCL3P10147 92 aa2.76□□□□□ -1.97
SYNE1-212ENST00000423061 NPYP01303 97 aa2.76□□□□□ -1.97
SYNE1-212ENST00000423061 RBM3P98179 157 aaKnown RBP2.76□□□□□ -1.97
SYNE1-212ENST00000423061 OR11H6Q8NGC7 330 aa2.76□□□□□ -1.97
SYNE1-212ENST00000423061 NDUFC2O95298 119 aa2.76□□□□□ -1.97
SYNE1-212ENST00000423061 CNTFRP26992 372 aa2.76□□□□□ -1.97
SYNE1-212ENST00000423061 TMEM190Q8WZ59 177 aa2.76□□□□□ -1.97
SYNE1-212ENST00000423061 NCKAP5O14513 1909 aa2.76□□□□□ -1.97
SYNE1-212ENST00000423061 NCOA6Q14686 2063 aaPredicted RBP2.76□□□□□ -1.97
SYNE1-212ENST00000423061 MEOX1P50221 254 aa2.76□□□□□ -1.97
SYNE1-212ENST00000423061 IGLV3-21P80748 117 aaPredicted RBP2.76□□□□□ -1.97
SYNE1-212ENST00000423061 GOLT1AQ6ZVE7 132 aa2.76□□□□□ -1.97
SYNE1-212ENST00000423061 PSMG4Q5JS54 123 aa2.76□□□□□ -1.97
SYNE1-212ENST00000423061 A0A0U1RRA0 63 aa2.76□□□□□ -1.97
SYNE1-212ENST00000423061 RNASE1P07998 156 aaKnown RBP2.76□□□□□ -1.97
SYNE1-212ENST00000423061 DLX6P56179 175 aa2.76□□□□□ -1.97
SYNE1-212ENST00000423061 KIR2DL5BQ8NHK3 375 aa2.76□□□□□ -1.97
SYNE1-212ENST00000423061 EEF1AKMT3Q96AZ1 226 aa2.76□□□□□ -1.97
SYNE1-212ENST00000423061 PF4P02776 101 aa2.76□□□□□ -1.97
SYNE1-212ENST00000423061 FGF6P10767 208 aa2.76□□□□□ -1.97
SYNE1-212ENST00000423061 SLC25A16P16260 332 aa2.76□□□□□ -1.97
SYNE1-212ENST00000423061 LOXL1Q08397 574 aaPredicted RBP2.76□□□□□ -1.97
SYNE1-212ENST00000423061 KHDC1LQ5JSQ8 128 aa2.76□□□□□ -1.97
SYNE1-212ENST00000423061 IGHV5-51A0A0C4DH38 117 aa2.76□□□□□ -1.97
SYNE1-212ENST00000423061 NUP210Q8TEM1 1887 aaPredicted RBP2.76□□□□□ -1.97
SYNE1-212ENST00000423061 TM4SF5O14894 197 aa2.76□□□□□ -1.97
SYNE1-212ENST00000423061 SLC25A2Q9BXI2 301 aa2.76□□□□□ -1.97
SYNE1-212ENST00000423061 A0A1W2PPV9 198 aa2.76□□□□□ -1.97
SYNE1-212ENST00000423061 IGHV1OR21-1A0A087WYE8 117 aa2.76□□□□□ -1.97
SYNE1-212ENST00000423061 A8MZ25 164 aa2.76□□□□□ -1.97
SYNE1-212ENST00000423061 C9JCJ5 164 aa2.76□□□□□ -1.97
SYNE1-212ENST00000423061 RNASE2P10153 161 aaKnown RBP2.76□□□□□ -1.97
SYNE1-212ENST00000423061 EFNB3Q15768 340 aa2.76□□□□□ -1.97
SYNE1-212ENST00000423061 TM4SF19Q96DZ7 209 aa2.76□□□□□ -1.97
SYNE1-212ENST00000423061 HES7Q9BYE0 225 aa2.76□□□□□ -1.97
SYNE1-212ENST00000423061 FSCN3Q9NQT6 498 aa2.76□□□□□ -1.97
SYNE1-212ENST00000423061 THADAQ6YHU6 1953 aa2.76□□□□□ -1.97
SYNE1-212ENST00000423061 ZNF785A8K8V0 405 aa2.76□□□□□ -1.97
SYNE1-212ENST00000423061 WISP1O95388 367 aa2.76□□□□□ -1.97
SYNE1-212ENST00000423061 TRBV25-1A0A075B6N4 114 aa2.76□□□□□ -1.97
SYNE1-212ENST00000423061 TMEM30BQ3MIR4 351 aa2.76□□□□□ -1.97
SYNE1-212ENST00000423061 DYSFO75923 2080 aa2.76□□□□□ -1.97
SYNE1-212ENST00000423061 TRAV8-3A0A0A6YYJ7 113 aa2.76□□□□□ -1.97
SYNE1-212ENST00000423061 IGHV1OR15-9A0A0B4J2B8 117 aa2.76□□□□□ -1.97
SYNE1-212ENST00000423061 RPS28P62857 69 aaKnown RBP2.76□□□□□ -1.97
SYNE1-212ENST00000423061 CR1LQ2VPA4 569 aa2.76□□□□□ -1.97
SYNE1-212ENST00000423061 PRDM14Q9GZV8 571 aa2.76□□□□□ -1.97
SYNE1-212ENST00000423061 OBSL1O75147 1896 aa2.76□□□□□ -1.97
SYNE1-212ENST00000423061 COX6CP09669 75 aa2.76□□□□□ -1.97
SYNE1-212ENST00000423061 APELAP0DMC3 54 aa2.76□□□□□ -1.97
SYNE1-212ENST00000423061 FAM53AQ6NSI3 398 aaPredicted RBP2.76□□□□□ -1.97
SYNE1-212ENST00000423061 MED12LQ86YW9 2145 aa2.76□□□□□ -1.97
SYNE1-212ENST00000423061 E9PLN8 166 aa2.76□□□□□ -1.97
SYNE1-212ENST00000423061 LGALS3P17931 250 aaKnown RBP2.76□□□□□ -1.97
SYNE1-212ENST00000423061 ERCC8Q13216 396 aa2.76□□□□□ -1.97
SYNE1-212ENST00000423061 FAM27BQ5VT28 67 aa2.76□□□□□ -1.97
SYNE1-212ENST00000423061 DENND4CQ5VZ89 1909 aa2.75□□□□□ -1.97
SYNE1-212ENST00000423061 IGKV1-27A0A075B6S5 117 aa2.75□□□□□ -1.97
SYNE1-212ENST00000423061 MYMXA0A1B0GTQ4 84 aa2.75□□□□□ -1.97
SYNE1-212ENST00000423061 LYZL6O75951 148 aa2.75□□□□□ -1.97
SYNE1-212ENST00000423061 MPV17P39210 176 aa2.75□□□□□ -1.97
SYNE1-212ENST00000423061 D6R8Y8 96 aa2.75□□□□□ -1.97
SYNE1-212ENST00000423061 SYNJ2BPP57105 145 aa2.75□□□□□ -1.97
SYNE1-212ENST00000423061 RPL30P62888 115 aaKnown RBP2.75□□□□□ -1.97
SYNE1-212ENST00000423061 ARTNQ5T4W7 220 aa2.75□□□□□ -1.97
SYNE1-212ENST00000423061 Q8TCH9 128 aa2.75□□□□□ -1.97
SYNE1-212ENST00000423061 LY96Q9Y6Y9 160 aa2.75□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms