RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 TCRAP04437 139 aa11.63□□□□□ -0.55
USP4-203ENST00000415188 GNG5P63218 68 aa11.63□□□□□ -0.55
USP4-203ENST00000415188 KLRD1Q13241 179 aa11.63□□□□□ -0.55
USP4-203ENST00000415188 ZNF562Q6V9R5 426 aa11.63□□□□□ -0.55
USP4-203ENST00000415188 Q8N6K4 173 aa11.63□□□□□ -0.55
USP4-203ENST00000415188 HILPDAQ9Y5L2 63 aa11.63□□□□□ -0.55
USP4-203ENST00000415188 SERF1AO75920 110 aa11.63□□□□□ -0.55
USP4-203ENST00000415188 BRS3P32247 399 aa11.63□□□□□ -0.55
USP4-203ENST00000415188 TCL1AP56279 114 aa11.63□□□□□ -0.55
USP4-203ENST00000415188 BPIFA4PQ86YQ2 179 aa11.63□□□□□ -0.55
USP4-203ENST00000415188 TTC9CQ8N5M4 171 aa11.63□□□□□ -0.55
USP4-203ENST00000415188 IGLV11-55A0A075B6I3 123 aa11.62□□□□□ -0.55
USP4-203ENST00000415188 NUPR1O60356 82 aa11.62□□□□□ -0.55
USP4-203ENST00000415188 APCSP02743 223 aa11.62□□□□□ -0.55
USP4-203ENST00000415188 MFAP4P55083 255 aa11.62□□□□□ -0.55
USP4-203ENST00000415188 LINC00310P59036 64 aa11.62□□□□□ -0.55
USP4-203ENST00000415188 HES1Q14469 280 aa11.62□□□□□ -0.55
USP4-203ENST00000415188 LHFPL4Q7Z7J7 247 aa11.62□□□□□ -0.55
USP4-203ENST00000415188 NHLRC2Q8NBF2 726 aa11.62□□□□□ -0.55
USP4-203ENST00000415188 OR4F17Q8NGA8 305 aa11.62□□□□□ -0.55
USP4-203ENST00000415188 OR4B1Q8NGF8 309 aa11.62□□□□□ -0.55
USP4-203ENST00000415188 ARPC1AQ92747 370 aa11.62□□□□□ -0.55
USP4-203ENST00000415188 GFRA4Q9GZZ7 299 aa11.62□□□□□ -0.55
USP4-203ENST00000415188 RPP21Q9H633 154 aaKnown RBP11.62□□□□□ -0.55
USP4-203ENST00000415188 THYN1Q9P016 225 aa11.62□□□□□ -0.55
USP4-203ENST00000415188 NAGKQ9UJ70 344 aa11.62□□□□□ -0.55
USP4-203ENST00000415188 A0A1B0GUS0 222 aa11.61□□□□□ -0.55
USP4-203ENST00000415188 WI2-2373I1.2A0A1W2PRP0 233 aa11.61□□□□□ -0.55
USP4-203ENST00000415188 FAM231BA6NCW3 169 aa11.61□□□□□ -0.55
USP4-203ENST00000415188 AVPP01185 164 aa11.61□□□□□ -0.55
USP4-203ENST00000415188 MRPL54Q6P161 138 aaKnown RBP11.61□□□□□ -0.55
USP4-203ENST00000415188 RNF125Q96EQ8 232 aa11.61□□□□□ -0.55
USP4-203ENST00000415188 PRSS22Q9GZN4 317 aa11.61□□□□□ -0.55
USP4-203ENST00000415188 SIRPDQ9H106 197 aa11.61□□□□□ -0.55
USP4-203ENST00000415188 GNB4Q9HAV0 340 aa11.61□□□□□ -0.55
USP4-203ENST00000415188 ZNF586Q9NXT0 402 aa11.61□□□□□ -0.55
USP4-203ENST00000415188 C1RLQ9NZP8 487 aa11.61□□□□□ -0.55
USP4-203ENST00000415188 C19orf71A6NCJ1 209 aa11.6□□□□□ -0.55
USP4-203ENST00000415188 A8MWL6 223 aa11.6□□□□□ -0.55
USP4-203ENST00000415188 BMPR1BO00238 502 aa11.6□□□□□ -0.55
USP4-203ENST00000415188 OR2J3O76001 311 aa11.6□□□□□ -0.55
USP4-203ENST00000415188 SCGB1D1O95968 90 aa11.6□□□□□ -0.55
USP4-203ENST00000415188 FRMD6-AS1P0C7T7 363 aa11.6□□□□□ -0.55
USP4-203ENST00000415188 S100A7P31151 101 aa11.6□□□□□ -0.55
USP4-203ENST00000415188 Q86TA4 180 aa11.6□□□□□ -0.55
USP4-203ENST00000415188 ZNF664Q8N3J9 261 aa11.6□□□□□ -0.55
USP4-203ENST00000415188 NUP35Q8NFH5 326 aa11.6□□□□□ -0.55
USP4-203ENST00000415188 PRO1933Q9H354 126 aa11.6□□□□□ -0.55
USP4-203ENST00000415188 TRBV19A0A075B6N1 114 aa11.59□□□□□ -0.55
USP4-203ENST00000415188 IGHV2-70DA0A0C4DH43 119 aa11.59□□□□□ -0.55
USP4-203ENST00000415188 P01737 135 aa11.59□□□□□ -0.55
USP4-203ENST00000415188 IGLC2P0DOY2 106 aa11.59□□□□□ -0.55
USP4-203ENST00000415188 PDE6HQ13956 83 aa11.59□□□□□ -0.55
USP4-203ENST00000415188 PRR27Q6MZM9 219 aa11.59□□□□□ -0.55
USP4-203ENST00000415188 SIGLECL1Q8N7X8 197 aa11.59□□□□□ -0.55
USP4-203ENST00000415188 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.59□□□□□ -0.55
USP4-203ENST00000415188 ZNF491Q8N8L2 437 aa11.59□□□□□ -0.55
USP4-203ENST00000415188 TMEM75Q8N9X5 138 aa11.59□□□□□ -0.55
USP4-203ENST00000415188 KCNS1Q96KK3 526 aa11.59□□□□□ -0.55
USP4-203ENST00000415188 NEU1Q99519 415 aa11.59□□□□□ -0.55
USP4-203ENST00000415188 TXN2Q99757 166 aa11.59□□□□□ -0.55
USP4-203ENST00000415188 SAMD10Q9BYL1 202 aa11.59□□□□□ -0.55
USP4-203ENST00000415188 A0A1B0GXF2 115 aa11.58□□□□□ -0.56
USP4-203ENST00000415188 A8MWP6 167 aa11.58□□□□□ -0.56
USP4-203ENST00000415188 K7EQM0 130 aa11.58□□□□□ -0.56
USP4-203ENST00000415188 GNG7O60262 68 aa11.58□□□□□ -0.56
USP4-203ENST00000415188 SPINK4O60575 86 aa11.58□□□□□ -0.56
USP4-203ENST00000415188 HLA-DRB1P01911 266 aa11.58□□□□□ -0.56
USP4-203ENST00000415188 TMEM11P17152 192 aa11.58□□□□□ -0.56
USP4-203ENST00000415188 FCGR2BP31994 310 aaPredicted RBP11.58□□□□□ -0.56
USP4-203ENST00000415188 UBE2E1P51965 193 aa11.58□□□□□ -0.56
USP4-203ENST00000415188 KLF5Q13887 457 aaPredicted RBP11.58□□□□□ -0.56
USP4-203ENST00000415188 KLK9Q2XQG4 91 aa11.58□□□□□ -0.56
USP4-203ENST00000415188 LBHQ53QV2 105 aaPredicted RBP11.58□□□□□ -0.56
USP4-203ENST00000415188 FAM162BQ5T6X4 162 aa11.58□□□□□ -0.56
USP4-203ENST00000415188 ASPHD1Q5U4P2 390 aa11.58□□□□□ -0.56
USP4-203ENST00000415188 LEMD1Q68G75 181 aa11.58□□□□□ -0.56
USP4-203ENST00000415188 ARL6IP6Q8N6S5 226 aa11.58□□□□□ -0.56
USP4-203ENST00000415188 DAZAP1Q96EP5 407 aaKnown RBP11.58□□□□□ -0.56
USP4-203ENST00000415188 C14orf144Q96I85 54 aa11.58□□□□□ -0.56
USP4-203ENST00000415188 FANCD2OSQ96PS1 177 aa11.58□□□□□ -0.56
USP4-203ENST00000415188 KLK9Q9UKQ9 250 aa11.58□□□□□ -0.56
USP4-203ENST00000415188 RPH3ALQ9UNE2 315 aa11.58□□□□□ -0.56
USP4-203ENST00000415188 SERTM2A0A1B0GWG4 89 aa11.57□□□□□ -0.56
USP4-203ENST00000415188 NPIPB6E9PJ23 425 aa11.57□□□□□ -0.56
USP4-203ENST00000415188 CA1P00915 261 aaPredicted RBP11.57□□□□□ -0.56
USP4-203ENST00000415188 IL4P05112 153 aa11.57□□□□□ -0.56
USP4-203ENST00000415188 FAM106CPP0CH98 169 aa11.57□□□□□ -0.56
USP4-203ENST00000415188 ZFP36P26651 326 aaKnown RBP11.57□□□□□ -0.56
USP4-203ENST00000415188 SRIP30626 198 aa11.57□□□□□ -0.56
USP4-203ENST00000415188 SLC35B1P78383 322 aa11.57□□□□□ -0.56
USP4-203ENST00000415188 C1orf194Q5T5A4 169 aa11.57□□□□□ -0.56
USP4-203ENST00000415188 Q6ZWC4 215 aa11.57□□□□□ -0.56
USP4-203ENST00000415188 HSPB9Q9BQS6 159 aa11.57□□□□□ -0.56
USP4-203ENST00000415188 NDUFAF3Q9BU61 184 aa11.57□□□□□ -0.56
USP4-203ENST00000415188 C21orf62Q9NYP8 219 aa11.57□□□□□ -0.56
USP4-203ENST00000415188 ZFP30Q9Y2G7 519 aa11.57□□□□□ -0.56
USP4-203ENST00000415188 ARHGAP32A7KAX9 2087 aa11.57□□□□□ -0.56
USP4-203ENST00000415188 KIR2DL5BA0A0G2JN68 375 aa11.57□□□□□ -0.56
USP4-203ENST00000415188 KIR2DL5BA0A0G2JPC4 375 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 99.7 ms