RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 FTH1P19P0C7X4 201 aa4.51□□□□□ -1.69
CCDC88A-203ENST00000412148 CCL8P80075 99 aa4.51□□□□□ -1.69
CCDC88A-203ENST00000412148 FAM27E3Q08E93 113 aa4.51□□□□□ -1.69
CCDC88A-203ENST00000412148 C22orf34Q6ZV56 151 aa4.51□□□□□ -1.69
CCDC88A-203ENST00000412148 PRNTQ86SH4 94 aa4.51□□□□□ -1.69
CCDC88A-203ENST00000412148 OR11H6Q8NGC7 330 aa4.51□□□□□ -1.69
CCDC88A-203ENST00000412148 SMPXQ9UHP9 88 aa4.51□□□□□ -1.69
CCDC88A-203ENST00000412148 SPEGQ15772 3267 aa4.51□□□□□ -1.69
CCDC88A-203ENST00000412148 A4D1N5 150 aa4.51□□□□□ -1.69
CCDC88A-203ENST00000412148 RBAKDNA6NC62 111 aa4.51□□□□□ -1.69
CCDC88A-203ENST00000412148 LINC01619G3V211 115 aa4.51□□□□□ -1.69
CCDC88A-203ENST00000412148 HCP5Q6MZN7 132 aa4.51□□□□□ -1.69
CCDC88A-203ENST00000412148 LYPD2Q6UXB3 125 aa4.51□□□□□ -1.69
CCDC88A-203ENST00000412148 NEGR1Q7Z3B1 354 aa4.51□□□□□ -1.69
CCDC88A-203ENST00000412148 PRSS3P2Q8NHM4 247 aa4.51□□□□□ -1.69
CCDC88A-203ENST00000412148 SIGLEC8Q9NYZ4 499 aa4.51□□□□□ -1.69
CCDC88A-203ENST00000412148 INSIG2Q9Y5U4 225 aa4.51□□□□□ -1.69
CCDC88A-203ENST00000412148 NAV3Q8IVL0 2385 aa4.51□□□□□ -1.69
CCDC88A-203ENST00000412148 A0A087X0K7 114 aa4.51□□□□□ -1.69
CCDC88A-203ENST00000412148 TRAV8-6A0A0B4J262 113 aa4.51□□□□□ -1.69
CCDC88A-203ENST00000412148 OOSP1A8MZH6 123 aa4.51□□□□□ -1.69
CCDC88A-203ENST00000412148 K7EP34 96 aa4.51□□□□□ -1.69
CCDC88A-203ENST00000412148 M0QZ24 198 aa4.51□□□□□ -1.69
CCDC88A-203ENST00000412148 CD3EP07766 207 aa4.51□□□□□ -1.69
CCDC88A-203ENST00000412148 BMI1P35226 326 aa4.51□□□□□ -1.69
CCDC88A-203ENST00000412148 RAB9AP51151 201 aa4.51□□□□□ -1.69
CCDC88A-203ENST00000412148 LYZP61626 148 aa4.51□□□□□ -1.69
CCDC88A-203ENST00000412148 BSPH1Q075Z2 132 aa4.51□□□□□ -1.69
CCDC88A-203ENST00000412148 ZNF672Q499Z4 452 aaPredicted RBP4.51□□□□□ -1.69
CCDC88A-203ENST00000412148 AMMECR1LQ6DCA0 310 aa4.51□□□□□ -1.69
CCDC88A-203ENST00000412148 Q6ZVH6 145 aa4.51□□□□□ -1.69
CCDC88A-203ENST00000412148 CSTL1Q9H114 145 aa4.51□□□□□ -1.69
CCDC88A-203ENST00000412148 AAMDCQ9H7C9 122 aa4.51□□□□□ -1.69
CCDC88A-203ENST00000412148 MALRD1Q5VYJ5 2156 aa4.5□□□□□ -1.69
CCDC88A-203ENST00000412148 TNRC18O15417 2968 aaPredicted RBP4.5□□□□□ -1.69
CCDC88A-203ENST00000412148 CFAP54Q96N23 3096 aa4.5□□□□□ -1.69
CCDC88A-203ENST00000412148 IGLV11-55A0A075B6I3 123 aa4.5□□□□□ -1.69
CCDC88A-203ENST00000412148 A0A0G2JNJ9 132 aa4.5□□□□□ -1.69
CCDC88A-203ENST00000412148 TMEM189A5PLL7 270 aa4.5□□□□□ -1.69
CCDC88A-203ENST00000412148 SRSF6Q13247 344 aaKnown RBP4.5□□□□□ -1.69
CCDC88A-203ENST00000412148 TAL2Q16559 108 aa4.5□□□□□ -1.69
CCDC88A-203ENST00000412148 DEFB109BQ30KR1 87 aa4.5□□□□□ -1.69
CCDC88A-203ENST00000412148 EXOC3-AS1Q8N2X6 119 aa4.5□□□□□ -1.69
CCDC88A-203ENST00000412148 PRELID3AQ96N28 172 aa4.5□□□□□ -1.69
CCDC88A-203ENST00000412148 Q9UFV3 132 aa4.5□□□□□ -1.69
CCDC88A-203ENST00000412148 TRAV8-1A0A0A6YYK1 113 aa4.5□□□□□ -1.69
CCDC88A-203ENST00000412148 A1L4Q6 167 aa4.5□□□□□ -1.69
CCDC88A-203ENST00000412148 SCGB2A1O75556 95 aa4.5□□□□□ -1.69
CCDC88A-203ENST00000412148 RPL7P18124 248 aaKnown RBP4.5□□□□□ -1.69
CCDC88A-203ENST00000412148 EVI2AP22794 236 aa4.5□□□□□ -1.69
CCDC88A-203ENST00000412148 IFI27P40305 119 aaPredicted RBP4.5□□□□□ -1.69
CCDC88A-203ENST00000412148 EBI3Q14213 229 aa4.5□□□□□ -1.69
CCDC88A-203ENST00000412148 MRPL51Q4U2R6 128 aaKnown RBP4.5□□□□□ -1.69
CCDC88A-203ENST00000412148 LDLRAD2Q5SZI1 272 aa4.5□□□□□ -1.69
CCDC88A-203ENST00000412148 ASPHD1Q5U4P2 390 aa4.5□□□□□ -1.69
CCDC88A-203ENST00000412148 TTC9CQ8N5M4 171 aa4.5□□□□□ -1.69
CCDC88A-203ENST00000412148 PRSS33Q8NF86 280 aa4.5□□□□□ -1.69
CCDC88A-203ENST00000412148 CFHR4Q92496 578 aa4.5□□□□□ -1.69
CCDC88A-203ENST00000412148 NXT2Q9NPJ8 142 aaKnown RBP4.5□□□□□ -1.69
CCDC88A-203ENST00000412148 PGPEP1Q9NXJ5 209 aa4.5□□□□□ -1.69
CCDC88A-203ENST00000412148 WDR87Q6ZQQ6 2873 aa4.49□□□□□ -1.69
CCDC88A-203ENST00000412148 G3V4G9 280 aa4.49□□□□□ -1.69
CCDC88A-203ENST00000412148 IGHV3-48P01763 117 aa4.49□□□□□ -1.69
CCDC88A-203ENST00000412148 IFI27L1Q96BM0 104 aa4.49□□□□□ -1.69
CCDC88A-203ENST00000412148 MRPL53Q96EL3 112 aaKnown RBP4.49□□□□□ -1.69
CCDC88A-203ENST00000412148 ABHD17AQ96GS6 310 aa4.49□□□□□ -1.69
CCDC88A-203ENST00000412148 PRR25Q96S07 402 aa4.49□□□□□ -1.69
CCDC88A-203ENST00000412148 ATP6V0BQ99437 205 aa4.49□□□□□ -1.69
CCDC88A-203ENST00000412148 HIF1ANQ9NWT6 349 aa4.49□□□□□ -1.69
CCDC88A-203ENST00000412148 AHCTF1Q8WYP5 2266 aa4.49□□□□□ -1.69
CCDC88A-203ENST00000412148 PRUNE2Q8WUY3 3088 aa4.49□□□□□ -1.69
CCDC88A-203ENST00000412148 IGHV4-4A0A075B6R2 117 aa4.49□□□□□ -1.69
CCDC88A-203ENST00000412148 GAGE10A6NGK3 116 aa4.49□□□□□ -1.69
CCDC88A-203ENST00000412148 ODF3BA8MYP8 253 aa4.49□□□□□ -1.69
CCDC88A-203ENST00000412148 D6R8Y8 96 aa4.49□□□□□ -1.69
CCDC88A-203ENST00000412148 M0R1W7 72 aa4.49□□□□□ -1.69
CCDC88A-203ENST00000412148 NBR2O15453 112 aa4.49□□□□□ -1.69
CCDC88A-203ENST00000412148 ENSAO43768 121 aaKnown RBP4.49□□□□□ -1.69
CCDC88A-203ENST00000412148 SH2D1AO60880 128 aa4.49□□□□□ -1.69
CCDC88A-203ENST00000412148 NCR2O95944 276 aa4.49□□□□□ -1.69
CCDC88A-203ENST00000412148 TMEM11P17152 192 aa4.49□□□□□ -1.69
CCDC88A-203ENST00000412148 CNTFRP26992 372 aa4.49□□□□□ -1.69
CCDC88A-203ENST00000412148 MFAP4P55083 255 aa4.49□□□□□ -1.69
CCDC88A-203ENST00000412148 LYZL1Q6UWQ5 148 aa4.49□□□□□ -1.69
CCDC88A-203ENST00000412148 ZNF575Q86XF7 245 aa4.49□□□□□ -1.69
CCDC88A-203ENST00000412148 FER1L6-AS1Q8NA97 138 aa4.49□□□□□ -1.69
CCDC88A-203ENST00000412148 RPEQ96AT9 228 aa4.49□□□□□ -1.69
CCDC88A-203ENST00000412148 SGK494Q96LW2 274 aa4.49□□□□□ -1.69
CCDC88A-203ENST00000412148 TM2D2Q9BX73 214 aa4.49□□□□□ -1.69
CCDC88A-203ENST00000412148 RPH3ALQ9UNE2 315 aa4.49□□□□□ -1.69
CCDC88A-203ENST00000412148 F8W735 103 aaPredicted RBP4.48□□□□□ -1.69
CCDC88A-203ENST00000412148 K7EMI3 77 aa4.48□□□□□ -1.69
CCDC88A-203ENST00000412148 PRRG2O14669 202 aa4.48□□□□□ -1.69
CCDC88A-203ENST00000412148 ATP5LO75964 103 aa4.48□□□□□ -1.69
CCDC88A-203ENST00000412148 SCGB1A1P11684 91 aa4.48□□□□□ -1.69
CCDC88A-203ENST00000412148 CD24P25063 80 aa4.48□□□□□ -1.69
CCDC88A-203ENST00000412148 FCER1GP30273 86 aa4.48□□□□□ -1.69
CCDC88A-203ENST00000412148 ZNF138P52744 262 aa4.48□□□□□ -1.69
CCDC88A-203ENST00000412148 FBXL19-AS1Q494R0 122 aa4.48□□□□□ -1.69
CCDC88A-203ENST00000412148 Q8N6K4 173 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 94.9 ms