RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 M0R1W7 72 aa9.29□□□□□ -0.92
PTPRF-203ENST00000372407 IGHV4-39P01824 125 aa9.29□□□□□ -0.92
PTPRF-203ENST00000372407 ZNF876PQ49A33 203 aa9.29□□□□□ -0.92
PTPRF-203ENST00000372407 MORN3Q6PF18 240 aaPredicted RBP9.29□□□□□ -0.92
PTPRF-203ENST00000372407 TMEM219Q86XT9 240 aa9.29□□□□□ -0.92
PTPRF-203ENST00000372407 MYO18BQ8IUG5 2567 aa9.29□□□□□ -0.92
PTPRF-203ENST00000372407 RSPO3Q9BXY4 272 aaPredicted RBP9.29□□□□□ -0.92
PTPRF-203ENST00000372407 DPH3P1Q9H4G8 78 aa9.29□□□□□ -0.92
PTPRF-203ENST00000372407 YLPM1P49750 1951 aaKnown RBP9.29□□□□□ -0.92
PTPRF-203ENST00000372407 A0A0U1RRA0 63 aa9.29□□□□□ -0.92
PTPRF-203ENST00000372407 TMEM238C9JI98 176 aa9.29□□□□□ -0.92
PTPRF-203ENST00000372407 SH2D1AO60880 128 aa9.29□□□□□ -0.92
PTPRF-203ENST00000372407 ZNF688P0C7X2 276 aa9.29□□□□□ -0.92
PTPRF-203ENST00000372407 LMO1P25800 156 aa9.29□□□□□ -0.92
PTPRF-203ENST00000372407 ZC2HC1BQ5TFG8 222 aa9.29□□□□□ -0.92
PTPRF-203ENST00000372407 ANAPC10Q9UM13 185 aa9.29□□□□□ -0.92
PTPRF-203ENST00000372407 PRR31Q5SQ13 230 aa9.28□□□□□ -0.92
PTPRF-203ENST00000372407 ZNF474Q6S9Z5 364 aaPredicted RBP9.28□□□□□ -0.92
PTPRF-203ENST00000372407 LINC00479Q96M42 142 aa9.28□□□□□ -0.92
PTPRF-203ENST00000372407 E9PQ18 207 aa9.28□□□□□ -0.92
PTPRF-203ENST00000372407 SLC25A20O43772 301 aa9.28□□□□□ -0.92
PTPRF-203ENST00000372407 WFDC12Q8WWY7 111 aa9.28□□□□□ -0.92
PTPRF-203ENST00000372407 NAA38Q9BRA0 125 aaKnown RBP9.28□□□□□ -0.92
PTPRF-203ENST00000372407 CHCHD5Q9BSY4 110 aa9.28□□□□□ -0.92
PTPRF-203ENST00000372407 TRBV7-1A0A0A6YYK4 115 aa9.28□□□□□ -0.92
PTPRF-203ENST00000372407 VCYO14598 125 aa9.28□□□□□ -0.92
PTPRF-203ENST00000372407 NUP210Q8TEM1 1887 aaPredicted RBP9.28□□□□□ -0.92
PTPRF-203ENST00000372407 A0A0G2JNJ9 132 aa9.28□□□□□ -0.92
PTPRF-203ENST00000372407 Q0VG73 95 aa9.28□□□□□ -0.92
PTPRF-203ENST00000372407 TMEM86BQ8N661 226 aa9.28□□□□□ -0.92
PTPRF-203ENST00000372407 SRSF8Q9BRL6 282 aaKnown RBP9.28□□□□□ -0.92
PTPRF-203ENST00000372407 Q9UFV3 132 aa9.28□□□□□ -0.92
PTPRF-203ENST00000372407 A0A087X0K7 114 aa9.27□□□□□ -0.92
PTPRF-203ENST00000372407 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.27□□□□□ -0.92
PTPRF-203ENST00000372407 MALP21145 153 aa9.27□□□□□ -0.92
PTPRF-203ENST00000372407 PDE6HQ13956 83 aa9.27□□□□□ -0.92
PTPRF-203ENST00000372407 MRPL52Q86TS9 123 aaKnown RBP9.27□□□□□ -0.92
PTPRF-203ENST00000372407 PLEKHB2Q96CS7 222 aa9.27□□□□□ -0.92
PTPRF-203ENST00000372407 H3BUX3 64 aa9.27□□□□□ -0.93
PTPRF-203ENST00000372407 SRSF6Q13247 344 aaKnown RBP9.27□□□□□ -0.93
PTPRF-203ENST00000372407 AMN1Q8IY45 258 aa9.27□□□□□ -0.93
PTPRF-203ENST00000372407 ZGRF1Q86YA3 2104 aa9.27□□□□□ -0.93
PTPRF-203ENST00000372407 UTRNP46939 3433 aa9.27□□□□□ -0.93
PTPRF-203ENST00000372407 A0A1W2PPI3 338 aa9.27□□□□□ -0.93
PTPRF-203ENST00000372407 PRTN3P24158 256 aa9.27□□□□□ -0.93
PTPRF-203ENST00000372407 PAX9P55771 341 aa9.27□□□□□ -0.93
PTPRF-203ENST00000372407 DSCR9P59020 149 aa9.27□□□□□ -0.93
PTPRF-203ENST00000372407 IGHV3-64A0A075B6Q5 118 aa9.26□□□□□ -0.93
PTPRF-203ENST00000372407 ADARB2-AS1A8MUL3 147 aa9.26□□□□□ -0.93
PTPRF-203ENST00000372407 M0R2P5 195 aa9.26□□□□□ -0.93
PTPRF-203ENST00000372407 ATXN8Q156A1 80 aa9.26□□□□□ -0.93
PTPRF-203ENST00000372407 Q86TA4 180 aa9.26□□□□□ -0.93
PTPRF-203ENST00000372407 PGPEP1Q9NXJ5 209 aa9.26□□□□□ -0.93
PTPRF-203ENST00000372407 GGTLC3B5MD39 225 aa9.26□□□□□ -0.93
PTPRF-203ENST00000372407 FXYD7P58549 80 aa9.26□□□□□ -0.93
PTPRF-203ENST00000372407 LYPD2Q6UXB3 125 aa9.26□□□□□ -0.93
PTPRF-203ENST00000372407 ZNF329Q86UD4 541 aa9.26□□□□□ -0.93
PTPRF-203ENST00000372407 TMEM158Q8WZ71 300 aa9.26□□□□□ -0.93
PTPRF-203ENST00000372407 USMG5Q96IX5 58 aa9.26□□□□□ -0.93
PTPRF-203ENST00000372407 SHANK2-AS3Q9BTD1 123 aa9.26□□□□□ -0.93
PTPRF-203ENST00000372407 SONP18583 2426 aaKnown RBP9.26□□□□□ -0.93
PTPRF-203ENST00000372407 B4DSR2 109 aa9.26□□□□□ -0.93
PTPRF-203ENST00000372407 TMEM249Q2WGJ8 235 aa9.26□□□□□ -0.93
PTPRF-203ENST00000372407 FAM231BA6NCW3 169 aa9.25□□□□□ -0.93
PTPRF-203ENST00000372407 NDPQ00604 133 aa9.25□□□□□ -0.93
PTPRF-203ENST00000372407 C14orf178Q8N769 122 aaPredicted RBP9.25□□□□□ -0.93
PTPRF-203ENST00000372407 TMEM14BQ9NUH8 114 aa9.25□□□□□ -0.93
PTPRF-203ENST00000372407 LY6G6EA0A0G2JKS1 128 aa9.25□□□□□ -0.93
PTPRF-203ENST00000372407 CMC4P56277 68 aaPredicted RBP9.25□□□□□ -0.93
PTPRF-203ENST00000372407 RIPPLY3P57055 190 aa9.25□□□□□ -0.93
PTPRF-203ENST00000372407 RPL36AP83881 106 aaKnown RBP9.25□□□□□ -0.93
PTPRF-203ENST00000372407 UBE2V1Q13404 147 aa9.25□□□□□ -0.93
PTPRF-203ENST00000372407 C11orf44Q8N8P7 122 aa9.25□□□□□ -0.93
PTPRF-203ENST00000372407 RPL36ALQ969Q0 106 aaKnown RBP9.25□□□□□ -0.93
PTPRF-203ENST00000372407 RCHY1Q96PM5 261 aa9.25□□□□□ -0.93
PTPRF-203ENST00000372407 GFRA4Q9GZZ7 299 aa9.25□□□□□ -0.93
PTPRF-203ENST00000372407 U3KQA8 63 aa9.25□□□□□ -0.93
PTPRF-203ENST00000372407 ZNF562Q6V9R5 426 aa9.25□□□□□ -0.93
PTPRF-203ENST00000372407 C20orf144Q9BQM9 153 aa9.25□□□□□ -0.93
PTPRF-203ENST00000372407 FCN3O75636 299 aa9.25□□□□□ -0.93
PTPRF-203ENST00000372407 OTOGLQ3ZCN5 2332 aa9.24□□□□□ -0.93
PTPRF-203ENST00000372407 K7ENP7 123 aa9.24□□□□□ -0.93
PTPRF-203ENST00000372407 CRPP02741 224 aa9.24□□□□□ -0.93
PTPRF-203ENST00000372407 ARMS2P0C7Q2 107 aa9.24□□□□□ -0.93
PTPRF-203ENST00000372407 PLA2G5P39877 138 aa9.24□□□□□ -0.93
PTPRF-203ENST00000372407 LIME1Q9H400 295 aa9.24□□□□□ -0.93
PTPRF-203ENST00000372407 CD5LO43866 347 aa9.24□□□□□ -0.93
PTPRF-203ENST00000372407 LINC00158P58513 81 aa9.24□□□□□ -0.93
PTPRF-203ENST00000372407 TMEM155Q4W5P6 130 aa9.24□□□□□ -0.93
PTPRF-203ENST00000372407 IGFL4Q6B9Z1 124 aa9.24□□□□□ -0.93
PTPRF-203ENST00000372407 BRD3OSQ6XYD6 125 aa9.24□□□□□ -0.93
PTPRF-203ENST00000372407 SELENOKQ9Y6D0 94 aa9.24□□□□□ -0.93
PTPRF-203ENST00000372407 A8MWP6 167 aa9.24□□□□□ -0.93
PTPRF-203ENST00000372407 NCOR1P1Q9H4R4 102 aa9.24□□□□□ -0.93
PTPRF-203ENST00000372407 A0A087WX48 190 aa9.24□□□□□ -0.93
PTPRF-203ENST00000372407 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP9.24□□□□□ -0.93
PTPRF-203ENST00000372407 COL8A2P25067 703 aa9.24□□□□□ -0.93
PTPRF-203ENST00000372407 GAGE2BQ13066 116 aa9.24□□□□□ -0.93
PTPRF-203ENST00000372407 GAGE2EQ4V326 116 aa9.24□□□□□ -0.93
PTPRF-203ENST00000372407 TEX43Q6ZNM6 134 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms