RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 KLHDC2Q9Y2U9 406 aa6.64□□□□□ -1.35
HMGB1-203ENST00000341423 FANCMQ8IYD8 2048 aa6.63□□□□□ -1.35
HMGB1-203ENST00000341423 TMEM238LA0A1B0GVL6 79 aa6.63□□□□□ -1.35
HMGB1-203ENST00000341423 A6NJY4 79 aa6.63□□□□□ -1.35
HMGB1-203ENST00000341423 SNAPINO95295 136 aa6.63□□□□□ -1.35
HMGB1-203ENST00000341423 MSRB3Q8IXL7 192 aa6.63□□□□□ -1.35
HMGB1-203ENST00000341423 MANBALQ9NQG1 85 aa6.63□□□□□ -1.35
HMGB1-203ENST00000341423 ANAPC10Q9UM13 185 aa6.63□□□□□ -1.35
HMGB1-203ENST00000341423 TRBV7-9A0A0J9YWB2 115 aa6.63□□□□□ -1.35
HMGB1-203ENST00000341423 A0A1W2PPQ1 181 aa6.63□□□□□ -1.35
HMGB1-203ENST00000341423 IGHV4-30-4P0DP06 118 aa6.63□□□□□ -1.35
HMGB1-203ENST00000341423 TMEM243Q9BU79 118 aa6.63□□□□□ -1.35
HMGB1-203ENST00000341423 TCRBP04435 133 aa6.63□□□□□ -1.35
HMGB1-203ENST00000341423 FHL1Q13642 323 aa6.63□□□□□ -1.35
HMGB1-203ENST00000341423 LINC00311Q8N616 119 aa6.63□□□□□ -1.35
HMGB1-203ENST00000341423 PYGO2Q9BRQ0 406 aa6.63□□□□□ -1.35
HMGB1-203ENST00000341423 NPCDR1Q9BY65 106 aa6.63□□□□□ -1.35
HMGB1-203ENST00000341423 SLC25A32Q9H2D1 315 aa6.63□□□□□ -1.35
HMGB1-203ENST00000341423 KIR2DL5BA0A0G2JN68 375 aa6.63□□□□□ -1.35
HMGB1-203ENST00000341423 KIR2DL5BA0A0G2JPC4 375 aa6.63□□□□□ -1.35
HMGB1-203ENST00000341423 TEX50A0A1B0GTY4 177 aa6.63□□□□□ -1.35
HMGB1-203ENST00000341423 G3V4G9 280 aa6.63□□□□□ -1.35
HMGB1-203ENST00000341423 GAGE2BQ13066 116 aa6.63□□□□□ -1.35
HMGB1-203ENST00000341423 KIR2DL5AQ8N109 375 aa6.63□□□□□ -1.35
HMGB1-203ENST00000341423 LINC00158P58513 81 aa6.63□□□□□ -1.35
HMGB1-203ENST00000341423 OR4D5Q8NGN0 318 aa6.63□□□□□ -1.35
HMGB1-203ENST00000341423 PROK2Q9HC23 129 aa6.63□□□□□ -1.35
HMGB1-203ENST00000341423 IGHV1OR15-1A0A075B7D0 117 aa6.62□□□□□ -1.35
HMGB1-203ENST00000341423 C15orf62A8K5M9 175 aa6.62□□□□□ -1.35
HMGB1-203ENST00000341423 JUNBP17275 347 aaPredicted RBP6.62□□□□□ -1.35
HMGB1-203ENST00000341423 RND3P61587 244 aa6.62□□□□□ -1.35
HMGB1-203ENST00000341423 FCN2Q15485 313 aa6.62□□□□□ -1.35
HMGB1-203ENST00000341423 C1orf194Q5T5A4 169 aa6.62□□□□□ -1.35
HMGB1-203ENST00000341423 CYB561D1Q8N8Q1 229 aa6.62□□□□□ -1.35
HMGB1-203ENST00000341423 COX6CP09669 75 aa6.62□□□□□ -1.35
HMGB1-203ENST00000341423 DUTP33316 252 aaKnown RBP6.62□□□□□ -1.35
HMGB1-203ENST00000341423 FABP5Q01469 135 aa6.62□□□□□ -1.35
HMGB1-203ENST00000341423 HMGN3Q15651 99 aa6.62□□□□□ -1.35
HMGB1-203ENST00000341423 FAM89BQ8N5H3 189 aa6.62□□□□□ -1.35
HMGB1-203ENST00000341423 RPP25LQ8N5L8 163 aaKnown RBP6.62□□□□□ -1.35
HMGB1-203ENST00000341423 TMEM70Q9BUB7 260 aa6.62□□□□□ -1.35
HMGB1-203ENST00000341423 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.62□□□□□ -1.35
HMGB1-203ENST00000341423 TRAV34A0A0B4J273 112 aa6.62□□□□□ -1.35
HMGB1-203ENST00000341423 A0A0J9YWU9 116 aa6.62□□□□□ -1.35
HMGB1-203ENST00000341423 LYRM9A8MSI8 78 aa6.62□□□□□ -1.35
HMGB1-203ENST00000341423 NCOR1P1Q9H4R4 102 aa6.62□□□□□ -1.35
HMGB1-203ENST00000341423 NLRC5Q86WI3 1866 aa6.62□□□□□ -1.35
HMGB1-203ENST00000341423 LINC00862A6NCI5 91 aa6.62□□□□□ -1.35
HMGB1-203ENST00000341423 NAA50Q9GZZ1 169 aaKnown RBP6.62□□□□□ -1.35
HMGB1-203ENST00000341423 TMEM222Q9H0R3 208 aa6.62□□□□□ -1.35
HMGB1-203ENST00000341423 NAT8BQ9UHF3 227 aa6.62□□□□□ -1.35
HMGB1-203ENST00000341423 MYLKQ15746 1914 aa6.61□□□□□ -1.35
HMGB1-203ENST00000341423 SPINK4O60575 86 aa6.61□□□□□ -1.35
HMGB1-203ENST00000341423 LINC00337Q8N6G1 96 aa6.61□□□□□ -1.35
HMGB1-203ENST00000341423 SIRPDQ9H106 197 aa6.61□□□□□ -1.35
HMGB1-203ENST00000341423 FLVCR2Q9UPI3 526 aa6.61□□□□□ -1.35
HMGB1-203ENST00000341423 LAMA4Q16363 1823 aa6.61□□□□□ -1.35
HMGB1-203ENST00000341423 IGKV2-24A0A0C4DH68 120 aa6.61□□□□□ -1.35
HMGB1-203ENST00000341423 DYNLT3P51808 116 aa6.61□□□□□ -1.35
HMGB1-203ENST00000341423 AICDAQ9GZX7 198 aa6.61□□□□□ -1.35
HMGB1-203ENST00000341423 MTFP1Q9UDX5 166 aa6.61□□□□□ -1.35
HMGB1-203ENST00000341423 GAB2Q9UQC2 676 aa6.61□□□□□ -1.35
HMGB1-203ENST00000341423 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP6.61□□□□□ -1.35
HMGB1-203ENST00000341423 H1FOOQ8IZA3 346 aaPredicted RBP6.61□□□□□ -1.35
HMGB1-203ENST00000341423 CAMK2N2Q96S95 79 aa6.61□□□□□ -1.35
HMGB1-203ENST00000341423 CTXND1A0A1B0GTU2 59 aa6.61□□□□□ -1.35
HMGB1-203ENST00000341423 C7orf71A4D174 169 aa6.61□□□□□ -1.35
HMGB1-203ENST00000341423 GRIFINA4D1Z8 144 aa6.61□□□□□ -1.35
HMGB1-203ENST00000341423 IFITM10A6NMD0 228 aa6.61□□□□□ -1.35
HMGB1-203ENST00000341423 RBMY1FQ15415 496 aaKnown RBP6.61□□□□□ -1.35
HMGB1-203ENST00000341423 LINC00322Q6ZN03 302 aaPredicted RBP6.61□□□□□ -1.35
HMGB1-203ENST00000341423 ZNF446Q9NWS9 450 aa6.61□□□□□ -1.35
HMGB1-203ENST00000341423 MYO5AQ9Y4I1 1855 aaKnown RBP6.61□□□□□ -1.35
HMGB1-203ENST00000341423 IGHV3-16A0A0C4DH30 117 aa6.6□□□□□ -1.35
HMGB1-203ENST00000341423 A0A1W2PPI3 338 aa6.6□□□□□ -1.35
HMGB1-203ENST00000341423 BUB3O43684 328 aa6.6□□□□□ -1.35
HMGB1-203ENST00000341423 GAGE6Q13070 117 aa6.6□□□□□ -1.35
HMGB1-203ENST00000341423 COX19Q49B96 90 aa6.6□□□□□ -1.35
HMGB1-203ENST00000341423 Q6ZQT7 251 aa6.6□□□□□ -1.35
HMGB1-203ENST00000341423 HIST1H2BAQ96A08 127 aa6.6□□□□□ -1.35
HMGB1-203ENST00000341423 NPIPB5A8MRT5 1133 aa6.6□□□□□ -1.35
HMGB1-203ENST00000341423 SPSB4Q96A44 273 aa6.6□□□□□ -1.35
HMGB1-203ENST00000341423 GGACTQ9BVM4 153 aa6.6□□□□□ -1.35
HMGB1-203ENST00000341423 SMIM2Q9BVW6 85 aa6.6□□□□□ -1.35
HMGB1-203ENST00000341423 CTSZQ9UBR2 303 aa6.6□□□□□ -1.35
HMGB1-203ENST00000341423 TRAV8-7A0A075B6U6 113 aa6.6□□□□□ -1.35
HMGB1-203ENST00000341423 Q6ZR03 302 aa6.6□□□□□ -1.35
HMGB1-203ENST00000341423 PGLYRP4Q96LB8 373 aa6.6□□□□□ -1.35
HMGB1-203ENST00000341423 PTPRFP10586 1907 aa6.6□□□□□ -1.35
HMGB1-203ENST00000341423 LYZL2Q7Z4W2 148 aa6.6□□□□□ -1.35
HMGB1-203ENST00000341423 C5orf56Q8N8D9 126 aa6.6□□□□□ -1.35
HMGB1-203ENST00000341423 B9D2Q9BPU9 175 aa6.6□□□□□ -1.35
HMGB1-203ENST00000341423 PRO0255Q9UI72 69 aa6.6□□□□□ -1.35
HMGB1-203ENST00000341423 SLC7A5P1Q8MH63 180 aa6.6□□□□□ -1.35
HMGB1-203ENST00000341423 ZNF491Q8N8L2 437 aa6.6□□□□□ -1.35
HMGB1-203ENST00000341423 GPR146Q96CH1 333 aa6.6□□□□□ -1.35
HMGB1-203ENST00000341423 OTORQ9NRC9 128 aa6.6□□□□□ -1.35
HMGB1-203ENST00000341423 PEX7O00628 323 aa6.59□□□□□ -1.35
HMGB1-203ENST00000341423 TMEM61Q8N0U2 210 aa6.59□□□□□ -1.35
HMGB1-203ENST00000341423 SMIM4Q8WVI0 70 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 320.9 ms