RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 TRBV7-9A0A0J9YWB2 115 aa8.39□□□□□ -1.07
CCDC88A-202ENST00000336838 LGALS1P09382 135 aaKnown RBP8.39□□□□□ -1.07
CCDC88A-202ENST00000336838 BMPERQ8N8U9 685 aa8.39□□□□□ -1.07
CCDC88A-202ENST00000336838 FGFBP3Q8TAT2 258 aa8.39□□□□□ -1.07
CCDC88A-202ENST00000336838 TIMM23O14925 209 aa8.38□□□□□ -1.07
CCDC88A-202ENST00000336838 DSCAMO60469 2012 aa8.38□□□□□ -1.07
CCDC88A-202ENST00000336838 VDAC2P45880 294 aaPredicted RBP8.38□□□□□ -1.07
CCDC88A-202ENST00000336838 TPTE2P1Q5T6R2 138 aa8.38□□□□□ -1.07
CCDC88A-202ENST00000336838 GAFA1Q96PS6 74 aa8.38□□□□□ -1.07
CCDC88A-202ENST00000336838 INAFM2P0DMQ5 153 aa8.38□□□□□ -1.07
CCDC88A-202ENST00000336838 KLF5Q13887 457 aaPredicted RBP8.38□□□□□ -1.07
CCDC88A-202ENST00000336838 OCIAD2Q56VL3 154 aa8.38□□□□□ -1.07
CCDC88A-202ENST00000336838 IGKV1D-17A0A075B6S4 117 aa8.38□□□□□ -1.07
CCDC88A-202ENST00000336838 GGTLC3B5MD39 225 aa8.38□□□□□ -1.07
CCDC88A-202ENST00000336838 Q6ZSR3 168 aa8.38□□□□□ -1.07
CCDC88A-202ENST00000336838 OR10W1Q8NGF6 305 aa8.38□□□□□ -1.07
CCDC88A-202ENST00000336838 C9orf118A6NHY6 69 aa8.38□□□□□ -1.07
CCDC88A-202ENST00000336838 SLC25A16P16260 332 aa8.38□□□□□ -1.07
CCDC88A-202ENST00000336838 CCL3L1P16619 93 aa8.38□□□□□ -1.07
CCDC88A-202ENST00000336838 LYZL1Q6UWQ5 148 aa8.38□□□□□ -1.07
CCDC88A-202ENST00000336838 IL17RELQ6ZVW7 336 aa8.38□□□□□ -1.07
CCDC88A-202ENST00000336838 V9GYV3 84 aa8.38□□□□□ -1.07
CCDC88A-202ENST00000336838 TRAV41A0A0B4J266 112 aa8.37□□□□□ -1.07
CCDC88A-202ENST00000336838 KIR2DL5BA0A0G2JN68 375 aa8.37□□□□□ -1.07
CCDC88A-202ENST00000336838 KIR2DL5BA0A0G2JPC4 375 aa8.37□□□□□ -1.07
CCDC88A-202ENST00000336838 SHISA9B4DS77 424 aa8.37□□□□□ -1.07
CCDC88A-202ENST00000336838 COX8AP10176 69 aa8.37□□□□□ -1.07
CCDC88A-202ENST00000336838 KIR2DL5AQ8N109 375 aa8.37□□□□□ -1.07
CCDC88A-202ENST00000336838 CD28P10747 220 aa8.37□□□□□ -1.07
CCDC88A-202ENST00000336838 LGALS9BQ3B8N2 356 aa8.37□□□□□ -1.07
CCDC88A-202ENST00000336838 MPV17L2Q567V2 206 aa8.37□□□□□ -1.07
CCDC88A-202ENST00000336838 LGALS9CQ6DKI2 356 aa8.37□□□□□ -1.07
CCDC88A-202ENST00000336838 SH2D1AO60880 128 aa8.37□□□□□ -1.07
CCDC88A-202ENST00000336838 CFAP161Q6P656 301 aa8.37□□□□□ -1.07
CCDC88A-202ENST00000336838 CHAC1Q9BUX1 264 aa8.37□□□□□ -1.07
CCDC88A-202ENST00000336838 PRSS22Q9GZN4 317 aa8.37□□□□□ -1.07
CCDC88A-202ENST00000336838 VMO1Q7Z5L0 202 aa8.37□□□□□ -1.07
CCDC88A-202ENST00000336838 THAP8Q8NA92 274 aa8.37□□□□□ -1.07
CCDC88A-202ENST00000336838 JMJD8Q96S16 334 aa8.37□□□□□ -1.07
CCDC88A-202ENST00000336838 TFPI2P48307 235 aa8.37□□□□□ -1.07
CCDC88A-202ENST00000336838 GATA3P23771 443 aa8.37□□□□□ -1.07
CCDC88A-202ENST00000336838 IGLC2P0DOY2 106 aa8.36□□□□□ -1.07
CCDC88A-202ENST00000336838 IGLC3P0DOY3 106 aa8.36□□□□□ -1.07
CCDC88A-202ENST00000336838 IGKV1-6A0A0C4DH72 117 aa8.36□□□□□ -1.07
CCDC88A-202ENST00000336838 Q6ZRM9 215 aa8.36□□□□□ -1.07
CCDC88A-202ENST00000336838 GPR179Q6PRD1 2367 aa8.36□□□□□ -1.07
CCDC88A-202ENST00000336838 SRSF6Q13247 344 aaKnown RBP8.36□□□□□ -1.07
CCDC88A-202ENST00000336838 ABHD17AQ96GS6 310 aa8.36□□□□□ -1.07
CCDC88A-202ENST00000336838 C11orf68Q9H3H3 251 aaKnown RBP8.36□□□□□ -1.07
CCDC88A-202ENST00000336838 PAX9P55771 341 aa8.36□□□□□ -1.07
CCDC88A-202ENST00000336838 FAM104BQ5XKR9 115 aa8.36□□□□□ -1.07
CCDC88A-202ENST00000336838 PLAURQ03405 335 aa8.36□□□□□ -1.07
CCDC88A-202ENST00000336838 NAV3Q8IVL0 2385 aa8.36□□□□□ -1.07
CCDC88A-202ENST00000336838 SNAI2O43623 268 aa8.36□□□□□ -1.07
CCDC88A-202ENST00000336838 TEX36Q5VZQ5 186 aa8.36□□□□□ -1.07
CCDC88A-202ENST00000336838 LCN12Q6JVE5 192 aa8.36□□□□□ -1.07
CCDC88A-202ENST00000336838 DNAJC30Q96LL9 226 aa8.36□□□□□ -1.07
CCDC88A-202ENST00000336838 CKS1BP61024 79 aa8.35□□□□□ -1.07
CCDC88A-202ENST00000336838 EXOC3-AS1Q8N2X6 119 aa8.35□□□□□ -1.07
CCDC88A-202ENST00000336838 MUC21A0A0G2JKD1 596 aa8.35□□□□□ -1.07
CCDC88A-202ENST00000336838 MUC21A0A140T8X8 626 aa8.35□□□□□ -1.07
CCDC88A-202ENST00000336838 CRPP02741 224 aa8.35□□□□□ -1.07
CCDC88A-202ENST00000336838 MUC21Q5SSG8 566 aa8.35□□□□□ -1.07
CCDC88A-202ENST00000336838 RBAKDNA6NC62 111 aa8.35□□□□□ -1.07
CCDC88A-202ENST00000336838 NPIPB5A8MRT5 1133 aa8.35□□□□□ -1.07
CCDC88A-202ENST00000336838 RHODO00212 210 aa8.35□□□□□ -1.07
CCDC88A-202ENST00000336838 VOPP1Q96AW1 172 aa8.35□□□□□ -1.07
CCDC88A-202ENST00000336838 SCRT1Q9BWW7 348 aa8.35□□□□□ -1.07
CCDC88A-202ENST00000336838 MYMXA0A1B0GTQ4 84 aa8.35□□□□□ -1.07
CCDC88A-202ENST00000336838 C9JQL5 133 aa8.35□□□□□ -1.07
CCDC88A-202ENST00000336838 ZNF415Q09FC8 603 aa8.35□□□□□ -1.07
CCDC88A-202ENST00000336838 Q8N8P6 123 aa8.35□□□□□ -1.07
CCDC88A-202ENST00000336838 SNHG12Q9BXW3 62 aa8.35□□□□□ -1.07
CCDC88A-202ENST00000336838 LENEPQ9Y5L5 61 aa8.35□□□□□ -1.07
CCDC88A-202ENST00000336838 PINLYPA6NC86 204 aa8.35□□□□□ -1.07
CCDC88A-202ENST00000336838 SSBP2P81877 361 aaPredicted RBP8.35□□□□□ -1.07
CCDC88A-202ENST00000336838 PYGO2Q9BRQ0 406 aa8.35□□□□□ -1.07
CCDC88A-202ENST00000336838 C1QTNF4Q9BXJ3 329 aa8.35□□□□□ -1.07
CCDC88A-202ENST00000336838 TTC28Q96AY4 2481 aa8.35□□□□□ -1.07
CCDC88A-202ENST00000336838 LINC01587Q99440 93 aa8.34□□□□□ -1.07
CCDC88A-202ENST00000336838 FAM208BQ5VWN6 2430 aa8.34□□□□□ -1.07
CCDC88A-202ENST00000336838 LEPROTO15243 131 aa8.34□□□□□ -1.07
CCDC88A-202ENST00000336838 AKIRIN1Q9H9L7 192 aaPredicted RBP8.34□□□□□ -1.07
CCDC88A-202ENST00000336838 EFNA4P52798 201 aa8.34□□□□□ -1.07
CCDC88A-202ENST00000336838 KRTAP27-1Q3LI81 207 aa8.34□□□□□ -1.07
CCDC88A-202ENST00000336838 ATP1A1-AS1Q5TC04 95 aa8.34□□□□□ -1.07
CCDC88A-202ENST00000336838 ZNF114Q8NC26 417 aa8.34□□□□□ -1.07
CCDC88A-202ENST00000336838 CST9LQ9H4G1 147 aa8.34□□□□□ -1.07
CCDC88A-202ENST00000336838 COLQQ9Y215 455 aaPredicted RBP8.34□□□□□ -1.07
CCDC88A-202ENST00000336838 IGFL3Q6UXB1 125 aa8.34□□□□□ -1.07
CCDC88A-202ENST00000336838 PPDPFLQ8WWR9 84 aa8.34□□□□□ -1.07
CCDC88A-202ENST00000336838 RASL10AQ92737 203 aa8.34□□□□□ -1.07
CCDC88A-202ENST00000336838 CRIM1Q9NZV1 1036 aa8.34□□□□□ -1.07
CCDC88A-202ENST00000336838 ACACBO00763 2458 aa8.34□□□□□ -1.07
CCDC88A-202ENST00000336838 MUC22E2RYF6 1773 aaPredicted RBP8.34□□□□□ -1.07
CCDC88A-202ENST00000336838 DAZ1Q9NQZ3 744 aaKnown RBP8.34□□□□□ -1.07
CCDC88A-202ENST00000336838 K7EP34 96 aa8.34□□□□□ -1.08
CCDC88A-202ENST00000336838 PRR14LQ5THK1 2151 aa8.33□□□□□ -1.08
CCDC88A-202ENST00000336838 SFTA2Q6UW10 78 aa8.33□□□□□ -1.08
CCDC88A-202ENST00000336838 C20orf78Q9BR46 151 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms