RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 NPCDR1Q9BY65 106 aa14.34□□□□□ -0.11
SHKBP1-221ENST00000599833 SLC25A22Q9H936 323 aa14.34□□□□□ -0.11
SHKBP1-221ENST00000599833 WFDC1Q9HC57 220 aa14.34□□□□□ -0.11
SHKBP1-221ENST00000599833 PFDN2Q9UHV9 154 aa14.34□□□□□ -0.11
SHKBP1-221ENST00000599833 KIR2DL5BA0A0G2JN68 375 aa14.33□□□□□ -0.12
SHKBP1-221ENST00000599833 KIR2DL5BA0A0G2JPC4 375 aa14.33□□□□□ -0.12
SHKBP1-221ENST00000599833 RPL35AP18077 110 aaKnown RBP14.33□□□□□ -0.12
SHKBP1-221ENST00000599833 CLINT1Q14677 625 aa14.33□□□□□ -0.12
SHKBP1-221ENST00000599833 TRPT1Q86TN4 253 aaKnown RBP14.33□□□□□ -0.12
SHKBP1-221ENST00000599833 KIR2DL5AQ8N109 375 aa14.33□□□□□ -0.12
SHKBP1-221ENST00000599833 KIR2DL5BQ8NHK3 375 aa14.33□□□□□ -0.12
SHKBP1-221ENST00000599833 THAP6Q8TBB0 222 aa14.33□□□□□ -0.12
SHKBP1-221ENST00000599833 PPP1R14BQ96C90 147 aa14.33□□□□□ -0.12
SHKBP1-221ENST00000599833 WDR61Q9GZS3 305 aaKnown RBP14.33□□□□□ -0.12
SHKBP1-221ENST00000599833 ZMAT4Q9H898 229 aa14.33□□□□□ -0.12
SHKBP1-221ENST00000599833 TRAV8-2A0A0B4J237 113 aa14.32□□□□□ -0.12
SHKBP1-221ENST00000599833 KNCNA6PVL3 124 aa14.32□□□□□ -0.12
SHKBP1-221ENST00000599833 MPDU1O75352 247 aa14.32□□□□□ -0.12
SHKBP1-221ENST00000599833 GIG44P09565 113 aaPredicted RBP14.32□□□□□ -0.12
SHKBP1-221ENST00000599833 OR5G3P0C626 314 aa14.32□□□□□ -0.12
SHKBP1-221ENST00000599833 DEFB1P60022 68 aa14.32□□□□□ -0.12
SHKBP1-221ENST00000599833 RAP2BP61225 183 aa14.32□□□□□ -0.12
SHKBP1-221ENST00000599833 PSMG4Q5JS54 123 aa14.32□□□□□ -0.12
SHKBP1-221ENST00000599833 C20orf173Q96LM9 149 aa14.32□□□□□ -0.12
SHKBP1-221ENST00000599833 ATP5SQ99766 215 aa14.32□□□□□ -0.12
SHKBP1-221ENST00000599833 EDA2RQ9HAV5 297 aa14.32□□□□□ -0.12
SHKBP1-221ENST00000599833 SLC39A9Q9NUM3 307 aa14.32□□□□□ -0.12
SHKBP1-221ENST00000599833 A0A087X0K7 114 aa14.31□□□□□ -0.12
SHKBP1-221ENST00000599833 LINC00305Q7Z4B0 112 aa14.31□□□□□ -0.12
SHKBP1-221ENST00000599833 ASB13Q8WXK3 278 aa14.31□□□□□ -0.12
SHKBP1-221ENST00000599833 GPR82Q96P67 336 aa14.31□□□□□ -0.12
SHKBP1-221ENST00000599833 OVOL2Q9BRP0 275 aa14.31□□□□□ -0.12
SHKBP1-221ENST00000599833 RSG1Q9BU20 258 aa14.31□□□□□ -0.12
SHKBP1-221ENST00000599833 PXMP4Q9Y6I8 212 aa14.31□□□□□ -0.12
SHKBP1-221ENST00000599833 PSMB3P49720 205 aa14.3□□□□□ -0.12
SHKBP1-221ENST00000599833 B2MP61769 119 aa14.3□□□□□ -0.12
SHKBP1-221ENST00000599833 GCSAMLQ5JQS6 135 aa14.3□□□□□ -0.12
SHKBP1-221ENST00000599833 GDF5OSQ5U4N7 250 aa14.3□□□□□ -0.12
SHKBP1-221ENST00000599833 ELOA3CA0A087WX78 387 aaPredicted RBP14.29□□□□□ -0.12
SHKBP1-221ENST00000599833 ISLRO14498 428 aa14.29□□□□□ -0.12
SHKBP1-221ENST00000599833 GALR1P47211 349 aa14.29□□□□□ -0.12
SHKBP1-221ENST00000599833 RAB31Q13636 194 aa14.29□□□□□ -0.12
SHKBP1-221ENST00000599833 Q6ZWC4 215 aa14.29□□□□□ -0.12
SHKBP1-221ENST00000599833 AQP10Q96PS8 301 aa14.29□□□□□ -0.12
SHKBP1-221ENST00000599833 DNAJC4Q9NNZ3 241 aa14.29□□□□□ -0.12
SHKBP1-221ENST00000599833 SACSQ9NZJ4 4579 aa14.28□□□□□ -0.12
SHKBP1-221ENST00000599833 TRAV5A0A0B4J249 113 aa14.28□□□□□ -0.12
SHKBP1-221ENST00000599833 RNF222A6NCQ9 220 aa14.28□□□□□ -0.12
SHKBP1-221ENST00000599833 UBE2CO00762 179 aa14.28□□□□□ -0.12
SHKBP1-221ENST00000599833 COX7A2P2O60397 106 aa14.28□□□□□ -0.12
SHKBP1-221ENST00000599833 APOC4P55056 127 aa14.28□□□□□ -0.12
SHKBP1-221ENST00000599833 C10orf113Q5VZT2 155 aa14.28□□□□□ -0.12
SHKBP1-221ENST00000599833 WWC2-AS2Q96NR7 200 aa14.28□□□□□ -0.12
SHKBP1-221ENST00000599833 PARD6GQ9BYG4 376 aaPredicted RBP14.28□□□□□ -0.12
SHKBP1-221ENST00000599833 SMIM3Q9BZL3 60 aa14.28□□□□□ -0.12
SHKBP1-221ENST00000599833 RFNGQ9Y644 331 aa14.28□□□□□ -0.12
SHKBP1-221ENST00000599833 DNAH1Q9P2D7 4330 aa14.27□□□□□ -0.12
SHKBP1-221ENST00000599833 H3BMM0 161 aa14.27□□□□□ -0.13
SHKBP1-221ENST00000599833 IGLC2P0DOY2 106 aa14.27□□□□□ -0.13
SHKBP1-221ENST00000599833 RPL7P18124 248 aaKnown RBP14.27□□□□□ -0.13
SHKBP1-221ENST00000599833 C4BPBP20851 252 aa14.27□□□□□ -0.13
SHKBP1-221ENST00000599833 MEOX2P50222 304 aa14.27□□□□□ -0.13
SHKBP1-221ENST00000599833 SNRPD3P62318 126 aaKnown RBP14.27□□□□□ -0.13
SHKBP1-221ENST00000599833 ACTL10Q5JWF8 245 aa14.27□□□□□ -0.13
SHKBP1-221ENST00000599833 IGFL4Q6B9Z1 124 aa14.27□□□□□ -0.13
SHKBP1-221ENST00000599833 CSTL1Q9H114 145 aa14.27□□□□□ -0.13
SHKBP1-221ENST00000599833 TP53TG1Q9Y2A0 90 aa14.27□□□□□ -0.13
SHKBP1-221ENST00000599833 S100A7P31151 101 aa14.26□□□□□ -0.13
SHKBP1-221ENST00000599833 DEFB135Q30KP9 77 aa14.26□□□□□ -0.13
SHKBP1-221ENST00000599833 Q6ZRG5 221 aa14.26□□□□□ -0.13
SHKBP1-221ENST00000599833 RNF183Q96D59 192 aa14.26□□□□□ -0.13
SHKBP1-221ENST00000599833 SAV1Q9H4B6 383 aaPredicted RBP14.26□□□□□ -0.13
SHKBP1-221ENST00000599833 A8MTW9 85 aa14.25□□□□□ -0.13
SHKBP1-221ENST00000599833 H3BQ15 152 aa14.25□□□□□ -0.13
SHKBP1-221ENST00000599833 HLA-DRB4P13762 266 aa14.25□□□□□ -0.13
SHKBP1-221ENST00000599833 FGL1Q08830 312 aa14.25□□□□□ -0.13
SHKBP1-221ENST00000599833 SPATA31B1PQ5VZV4 182 aa14.25□□□□□ -0.13
SHKBP1-221ENST00000599833 STHQ8IWL8 128 aa14.25□□□□□ -0.13
SHKBP1-221ENST00000599833 OR1L4Q8NGR5 311 aa14.25□□□□□ -0.13
SHKBP1-221ENST00000599833 OR2T35Q8NGX2 323 aa14.25□□□□□ -0.13
SHKBP1-221ENST00000599833 GATAD1Q8WUU5 269 aa14.25□□□□□ -0.13
SHKBP1-221ENST00000599833 FAM167A-AS1Q96KT0 104 aa14.25□□□□□ -0.13
SHKBP1-221ENST00000599833 PFDN5Q99471 154 aa14.25□□□□□ -0.13
SHKBP1-221ENST00000599833 TNFSF18Q9UNG2 199 aa14.25□□□□□ -0.13
SHKBP1-221ENST00000599833 HLA-DRB4X5D2U9 266 aa14.25□□□□□ -0.13
SHKBP1-221ENST00000599833 F6UB75 175 aa14.24□□□□□ -0.13
SHKBP1-221ENST00000599833 HLA-DMBP28068 263 aa14.24□□□□□ -0.13
SHKBP1-221ENST00000599833 SAMD13Q5VXD3 122 aa14.24□□□□□ -0.13
SHKBP1-221ENST00000599833 CSNK1G2-AS1Q8NCQ2 148 aa14.24□□□□□ -0.13
SHKBP1-221ENST00000599833 SAT2Q96F10 170 aaPredicted RBP14.24□□□□□ -0.13
SHKBP1-221ENST00000599833 C16orf92Q96LL3 132 aa14.24□□□□□ -0.13
SHKBP1-221ENST00000599833 LINC00052Q96N35 136 aa14.24□□□□□ -0.13
SHKBP1-221ENST00000599833 RYR3Q15413 4870 aa14.23□□□□□ -0.13
SHKBP1-221ENST00000599833 SLC17A3O00476 420 aa14.23□□□□□ -0.13
SHKBP1-221ENST00000599833 SNRPCP09234 159 aaKnown RBP14.23□□□□□ -0.13
SHKBP1-221ENST00000599833 ID1P41134 155 aa14.23□□□□□ -0.13
SHKBP1-221ENST00000599833 FOXI2Q6ZQN5 318 aa14.23□□□□□ -0.13
SHKBP1-221ENST00000599833 S100A7AQ86SG5 101 aa14.23□□□□□ -0.13
SHKBP1-221ENST00000599833 RNF182Q8N6D2 247 aa14.23□□□□□ -0.13
SHKBP1-221ENST00000599833 CLUHP3Q96NS8 147 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms