RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 IGHV3OR16-12A0A075B7B8 117 aa7.75□□□□□ -1.17
VPS39-208ENST00000564994 A8MTW9 85 aa7.75□□□□□ -1.17
VPS39-208ENST00000564994 IL5P05113 134 aa7.75□□□□□ -1.17
VPS39-208ENST00000564994 MEOX2P50222 304 aa7.75□□□□□ -1.17
VPS39-208ENST00000564994 RRAS2P62070 204 aaPredicted RBP7.75□□□□□ -1.17
VPS39-208ENST00000564994 PSG9Q00887 426 aa7.75□□□□□ -1.17
VPS39-208ENST00000564994 ARL16Q0P5N6 197 aa7.75□□□□□ -1.17
VPS39-208ENST00000564994 SAMD13Q5VXD3 122 aa7.75□□□□□ -1.17
VPS39-208ENST00000564994 SPATA31B1PQ5VZV4 182 aa7.75□□□□□ -1.17
VPS39-208ENST00000564994 IGFL4Q6B9Z1 124 aa7.75□□□□□ -1.17
VPS39-208ENST00000564994 EBLN2Q6P2I7 272 aa7.75□□□□□ -1.17
VPS39-208ENST00000564994 AMTNQ6UX39 209 aa7.75□□□□□ -1.17
VPS39-208ENST00000564994 C1orf158Q8N1D5 194 aa7.75□□□□□ -1.17
VPS39-208ENST00000564994 SLC25A39Q9BZJ4 359 aaPredicted RBP7.75□□□□□ -1.17
VPS39-208ENST00000564994 C20orf85Q9H1P6 137 aa7.75□□□□□ -1.17
VPS39-208ENST00000564994 RPRMQ9NS64 109 aa7.75□□□□□ -1.17
VPS39-208ENST00000564994 GSKIPQ9P0R6 139 aa7.75□□□□□ -1.17
VPS39-208ENST00000564994 HERC2O95714 4834 aa7.74□□□□□ -1.17
VPS39-208ENST00000564994 DEFB131BA0A096LNP1 70 aa7.74□□□□□ -1.17
VPS39-208ENST00000564994 SMIM9A6NGZ8 99 aa7.74□□□□□ -1.17
VPS39-208ENST00000564994 CCSO14618 274 aa7.74□□□□□ -1.17
VPS39-208ENST00000564994 LYRM1O43325 122 aa7.74□□□□□ -1.17
VPS39-208ENST00000564994 TSC22D2O75157 780 aa7.74□□□□□ -1.17
VPS39-208ENST00000564994 MBPP02686 304 aaPredicted RBP7.74□□□□□ -1.17
VPS39-208ENST00000564994 LINC00869P0C866 280 aa7.74□□□□□ -1.17
VPS39-208ENST00000564994 EMP1P54849 157 aa7.74□□□□□ -1.17
VPS39-208ENST00000564994 PLP1P60201 277 aa7.74□□□□□ -1.17
VPS39-208ENST00000564994 DLK1P80370 383 aa7.74□□□□□ -1.17
VPS39-208ENST00000564994 PATE2Q6UY27 113 aa7.74□□□□□ -1.17
VPS39-208ENST00000564994 RNF182Q8N6D2 247 aa7.74□□□□□ -1.17
VPS39-208ENST00000564994 GPR82Q96P67 336 aa7.74□□□□□ -1.17
VPS39-208ENST00000564994 UHRF2Q96PU4 802 aa7.74□□□□□ -1.17
VPS39-208ENST00000564994 SHANK2-AS3Q9BTD1 123 aa7.74□□□□□ -1.17
VPS39-208ENST00000564994 RNF126Q9BV68 326 aa7.74□□□□□ -1.17
VPS39-208ENST00000564994 TRAV6A0A075B6T7 132 aa7.73□□□□□ -1.17
VPS39-208ENST00000564994 C7orf66A4D0T2 115 aa7.73□□□□□ -1.17
VPS39-208ENST00000564994 FNDC10F2Z333 226 aa7.73□□□□□ -1.17
VPS39-208ENST00000564994 K7EPK0 472 aa7.73□□□□□ -1.17
VPS39-208ENST00000564994 HYPMO75409 117 aa7.73□□□□□ -1.17
VPS39-208ENST00000564994 AMBPP02760 352 aa7.73□□□□□ -1.17
VPS39-208ENST00000564994 TCRBP04435 133 aa7.73□□□□□ -1.17
VPS39-208ENST00000564994 CNN1P51911 297 aaKnown RBP7.73□□□□□ -1.17
VPS39-208ENST00000564994 TAS2R30P59541 319 aa7.73□□□□□ -1.17
VPS39-208ENST00000564994 RAP2BP61225 183 aa7.73□□□□□ -1.17
VPS39-208ENST00000564994 SELENOTP62341 195 aa7.73□□□□□ -1.17
VPS39-208ENST00000564994 FGL1Q08830 312 aa7.73□□□□□ -1.17
VPS39-208ENST00000564994 SLC38A11Q08AI6 406 aa7.73□□□□□ -1.17
VPS39-208ENST00000564994 CNPY1Q3B7I2 92 aa7.73□□□□□ -1.17
VPS39-208ENST00000564994 OR10P1Q8NGE3 313 aa7.73□□□□□ -1.17
VPS39-208ENST00000564994 NPVFQ9HCQ7 196 aa7.73□□□□□ -1.17
VPS39-208ENST00000564994 PLA2G2EQ9NZK7 142 aa7.73□□□□□ -1.17
VPS39-208ENST00000564994 HIGD1AQ9Y241 93 aa7.73□□□□□ -1.17
VPS39-208ENST00000564994 RFNGQ9Y644 331 aa7.73□□□□□ -1.17
VPS39-208ENST00000564994 TMEM189A5PLL7 270 aa7.72□□□□□ -1.17
VPS39-208ENST00000564994 MRPS12O15235 138 aaKnown RBP7.72□□□□□ -1.17
VPS39-208ENST00000564994 CRXO43186 299 aaPredicted RBP7.72□□□□□ -1.17
VPS39-208ENST00000564994 OR5G3P0C626 314 aa7.72□□□□□ -1.17
VPS39-208ENST00000564994 SPART-AS1P0CW21 52 aa7.72□□□□□ -1.17
VPS39-208ENST00000564994 FAM222AQ5U5X8 452 aa7.72□□□□□ -1.17
VPS39-208ENST00000564994 TEPPQ6URK8 271 aa7.72□□□□□ -1.17
VPS39-208ENST00000564994 SEC22CQ9BRL7 303 aa7.72□□□□□ -1.17
VPS39-208ENST00000564994 ARL6Q9H0F7 186 aa7.72□□□□□ -1.17
VPS39-208ENST00000564994 NDUFA13Q9P0J0 144 aa7.72□□□□□ -1.17
VPS39-208ENST00000564994 DKK2Q9UBU2 259 aa7.72□□□□□ -1.17
VPS39-208ENST00000564994 GOLT1BQ9Y3E0 138 aa7.72□□□□□ -1.17
VPS39-208ENST00000564994 KIAA1109Q2LD37 5005 aa7.72□□□□□ -1.17
VPS39-208ENST00000564994 DYNC1H1Q14204 4646 aaKnown RBP7.71□□□□□ -1.17
VPS39-208ENST00000564994 A0A087X0K7 114 aa7.71□□□□□ -1.18
VPS39-208ENST00000564994 M0R2Z0 102 aa7.71□□□□□ -1.18
VPS39-208ENST00000564994 PRM2P04554 102 aa7.71□□□□□ -1.18
VPS39-208ENST00000564994 PRB4P10163 310 aaPredicted RBP7.71□□□□□ -1.18
VPS39-208ENST00000564994 RPL7P18124 248 aaKnown RBP7.71□□□□□ -1.18
VPS39-208ENST00000564994 S100A7P31151 101 aa7.71□□□□□ -1.18
VPS39-208ENST00000564994 SPINK13Q1W4C9 94 aa7.71□□□□□ -1.18
VPS39-208ENST00000564994 OR11H7Q8NGC8 314 aa7.71□□□□□ -1.18
VPS39-208ENST00000564994 ZNF431Q8TF32 576 aaPredicted RBP7.71□□□□□ -1.18
VPS39-208ENST00000564994 IGF2BP2-AS1Q96M15 143 aa7.71□□□□□ -1.18
VPS39-208ENST00000564994 ARV1Q9H2C2 271 aa7.71□□□□□ -1.18
VPS39-208ENST00000564994 C11orf1Q9H5F2 150 aa7.71□□□□□ -1.18
VPS39-208ENST00000564994 NUDT15Q9NV35 164 aa7.71□□□□□ -1.18
VPS39-208ENST00000564994 MGAT4CQ9UBM8 478 aa7.71□□□□□ -1.18
VPS39-208ENST00000564994 YTHDF2Q9Y5A9 579 aaKnown RBP7.71□□□□□ -1.18
VPS39-208ENST00000564994 DNAH11Q96DT5 4516 aa7.7□□□□□ -1.18
VPS39-208ENST00000564994 PKD1P98161 4303 aa7.7□□□□□ -1.18
VPS39-208ENST00000564994 LOC102723971A0A1B0GUV8 181 aa7.7□□□□□ -1.18
VPS39-208ENST00000564994 AGPAT2O15120 278 aa7.7□□□□□ -1.18
VPS39-208ENST00000564994 DUSP14O95147 198 aaKnown RBP7.7□□□□□ -1.18
VPS39-208ENST00000564994 HBE1P02100 147 aa7.7□□□□□ -1.18
VPS39-208ENST00000564994 CXCL3P19876 107 aa7.7□□□□□ -1.18
VPS39-208ENST00000564994 RRN3P1Q2M238 152 aa7.7□□□□□ -1.18
VPS39-208ENST00000564994 MORN5Q5VZ52 161 aa7.7□□□□□ -1.18
VPS39-208ENST00000564994 ZNF738Q8NE65 137 aa7.7□□□□□ -1.18
VPS39-208ENST00000564994 TMEM37Q8WXS4 190 aa7.7□□□□□ -1.18
VPS39-208ENST00000564994 MGST2Q99735 147 aa7.7□□□□□ -1.18
VPS39-208ENST00000564994 NIPSNAP3BQ9BS92 247 aa7.7□□□□□ -1.18
VPS39-208ENST00000564994 NDUFAF3Q9BU61 184 aa7.7□□□□□ -1.18
VPS39-208ENST00000564994 GGACTQ9BVM4 153 aa7.7□□□□□ -1.18
VPS39-208ENST00000564994 LSM5Q9Y4Y9 91 aaKnown RBP7.7□□□□□ -1.18
VPS39-208ENST00000564994 NACAE9PAV3 2078 aa7.69□□□□□ -1.18
VPS39-208ENST00000564994 FAM24AA6NFZ4 105 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms