RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 CSN1S1P47710 185 aa13.94□□□□□ -0.18
SYNE3-202ENST00000553340 ARF6P62330 175 aa13.94□□□□□ -0.18
SYNE3-202ENST00000553340 ZC2HC1AQ96GY0 325 aa13.94□□□□□ -0.18
SYNE3-202ENST00000553340 RASL11BQ9BPW5 248 aa13.94□□□□□ -0.18
SYNE3-202ENST00000553340 FTH1P19P0C7X4 201 aa13.94□□□□□ -0.18
SYNE3-202ENST00000553340 GPR183P32249 361 aa13.94□□□□□ -0.18
SYNE3-202ENST00000553340 IGFL3Q6UXB1 125 aa13.94□□□□□ -0.18
SYNE3-202ENST00000553340 TMEM190Q8WZ59 177 aa13.94□□□□□ -0.18
SYNE3-202ENST00000553340 ZNF747Q9BV97 191 aa13.94□□□□□ -0.18
SYNE3-202ENST00000553340 A0A1B0GW15 77 aa13.94□□□□□ -0.18
SYNE3-202ENST00000553340 COX8AP10176 69 aa13.94□□□□□ -0.18
SYNE3-202ENST00000553340 AMMECR1LQ6DCA0 310 aa13.94□□□□□ -0.18
SYNE3-202ENST00000553340 Q71RC1 249 aaPredicted RBP13.94□□□□□ -0.18
SYNE3-202ENST00000553340 FA2HQ7L5A8 372 aa13.94□□□□□ -0.18
SYNE3-202ENST00000553340 PPP1R27Q86WC6 154 aa13.94□□□□□ -0.18
SYNE3-202ENST00000553340 GATD1Q8NB37 220 aa13.94□□□□□ -0.18
SYNE3-202ENST00000553340 PRSS3P2Q8NHM4 247 aa13.94□□□□□ -0.18
SYNE3-202ENST00000553340 SPAARA0A1B0GVQ0 90 aa13.93□□□□□ -0.18
SYNE3-202ENST00000553340 K7EQM0 130 aa13.93□□□□□ -0.18
SYNE3-202ENST00000553340 RBP4P02753 201 aa13.93□□□□□ -0.18
SYNE3-202ENST00000553340 RBPJQ06330 500 aa13.93□□□□□ -0.18
SYNE3-202ENST00000553340 TMEM75Q8N9X5 138 aa13.93□□□□□ -0.18
SYNE3-202ENST00000553340 DEFB124Q8NES8 71 aa13.93□□□□□ -0.18
SYNE3-202ENST00000553340 OR10AG1Q8NH19 301 aa13.93□□□□□ -0.18
SYNE3-202ENST00000553340 RNF24Q9Y225 148 aa13.93□□□□□ -0.18
SYNE3-202ENST00000553340 ZNF785A8K8V0 405 aa13.93□□□□□ -0.18
SYNE3-202ENST00000553340 TEX22C9J3V5 150 aa13.93□□□□□ -0.18
SYNE3-202ENST00000553340 C16orf97H3BN30 126 aa13.93□□□□□ -0.18
SYNE3-202ENST00000553340 BSPH1Q075Z2 132 aa13.93□□□□□ -0.18
SYNE3-202ENST00000553340 SCNM1Q9BWG6 230 aa13.93□□□□□ -0.18
SYNE3-202ENST00000553340 CST9LQ9H4G1 147 aa13.93□□□□□ -0.18
SYNE3-202ENST00000553340 NGBQ9NPG2 151 aa13.93□□□□□ -0.18
SYNE3-202ENST00000553340 KAAG1Q9UBP8 84 aa13.93□□□□□ -0.18
SYNE3-202ENST00000553340 ZFHX4Q86UP3 3567 aa13.92□□□□□ -0.18
SYNE3-202ENST00000553340 COTL1Q14019 142 aa13.92□□□□□ -0.18
SYNE3-202ENST00000553340 PIP4P1Q86T03 277 aa13.92□□□□□ -0.18
SYNE3-202ENST00000553340 BPIFA4PQ86YQ2 179 aa13.92□□□□□ -0.18
SYNE3-202ENST00000553340 TNFRSF14Q92956 283 aa13.92□□□□□ -0.18
SYNE3-202ENST00000553340 TRBV19A0A075B6N1 114 aa13.92□□□□□ -0.18
SYNE3-202ENST00000553340 LDLRAD2Q5SZI1 272 aa13.92□□□□□ -0.18
SYNE3-202ENST00000553340 Q6ZS92 163 aa13.92□□□□□ -0.18
SYNE3-202ENST00000553340 INSIG2Q9Y5U4 225 aa13.92□□□□□ -0.18
SYNE3-202ENST00000553340 PPBPP02775 128 aa13.91□□□□□ -0.18
SYNE3-202ENST00000553340 PSG9Q00887 426 aa13.91□□□□□ -0.18
SYNE3-202ENST00000553340 Q6AWC8 147 aa13.91□□□□□ -0.18
SYNE3-202ENST00000553340 FAM57AQ8TBR7 257 aa13.91□□□□□ -0.18
SYNE3-202ENST00000553340 PSG8Q9UQ74 426 aa13.91□□□□□ -0.18
SYNE3-202ENST00000553340 I3L2K1 104 aa13.91□□□□□ -0.18
SYNE3-202ENST00000553340 PEF1Q9UBV8 284 aaKnown RBP13.91□□□□□ -0.18
SYNE3-202ENST00000553340 RP1L1Q8IWN7 2480 aaPredicted RBP13.9□□□□□ -0.18
SYNE3-202ENST00000553340 TPPP3Q9BW30 176 aa13.9□□□□□ -0.18
SYNE3-202ENST00000553340 IGHV1-3A0A0C4DH29 117 aa13.9□□□□□ -0.18
SYNE3-202ENST00000553340 PSG3Q16557 428 aa13.9□□□□□ -0.18
SYNE3-202ENST00000553340 OCIAD2Q56VL3 154 aa13.9□□□□□ -0.18
SYNE3-202ENST00000553340 C2orf91Q6ZV80 131 aa13.9□□□□□ -0.18
SYNE3-202ENST00000553340 LYPD1Q8N2G4 141 aa13.9□□□□□ -0.18
SYNE3-202ENST00000553340 ARL6IP6Q8N6S5 226 aa13.9□□□□□ -0.18
SYNE3-202ENST00000553340 PRSS33Q8NF86 280 aa13.9□□□□□ -0.18
SYNE3-202ENST00000553340 C17orf77Q96MU5 243 aa13.9□□□□□ -0.18
SYNE3-202ENST00000553340 SHANK2-AS3Q9BTD1 123 aa13.9□□□□□ -0.18
SYNE3-202ENST00000553340 ABCA1O95477 2261 aa13.89□□□□□ -0.19
SYNE3-202ENST00000553340 ROS1P08922 2347 aa13.89□□□□□ -0.19
SYNE3-202ENST00000553340 VSTM5A8MXK1 200 aa13.89□□□□□ -0.19
SYNE3-202ENST00000553340 IGKV1-17P01599 117 aa13.89□□□□□ -0.19
SYNE3-202ENST00000553340 FBXL15Q9H469 300 aa13.89□□□□□ -0.19
SYNE3-202ENST00000553340 ASPMQ8IZT6 3477 aa13.89□□□□□ -0.19
SYNE3-202ENST00000553340 NCR2O95944 276 aa13.89□□□□□ -0.19
SYNE3-202ENST00000553340 SIGLEC15Q6ZMC9 328 aa13.89□□□□□ -0.19
SYNE3-202ENST00000553340 IGLV1-47P01700 117 aa13.88□□□□□ -0.19
SYNE3-202ENST00000553340 RNASE6Q93091 150 aaKnown RBP13.88□□□□□ -0.19
SYNE3-202ENST00000553340 ASCL2Q99929 193 aa13.88□□□□□ -0.19
SYNE3-202ENST00000553340 CFAP47Q6ZTR5 3102 aa13.88□□□□□ -0.19
SYNE3-202ENST00000553340 SEC11AP67812 179 aa13.88□□□□□ -0.19
SYNE3-202ENST00000553340 DPF1Q92782 380 aa13.88□□□□□ -0.19
SYNE3-202ENST00000553340 VPS25Q9BRG1 176 aa13.88□□□□□ -0.19
SYNE3-202ENST00000553340 TRAV8-6A0A0B4J262 113 aa13.87□□□□□ -0.19
SYNE3-202ENST00000553340 C7orf71A4D174 169 aa13.87□□□□□ -0.19
SYNE3-202ENST00000553340 H3BRN7 92 aa13.87□□□□□ -0.19
SYNE3-202ENST00000553340 BUB1B-PAK6H3BSN5 160 aa13.87□□□□□ -0.19
SYNE3-202ENST00000553340 SNAI2O43623 268 aa13.87□□□□□ -0.19
SYNE3-202ENST00000553340 IFI27P40305 119 aaPredicted RBP13.87□□□□□ -0.19
SYNE3-202ENST00000553340 CRIP1P50238 77 aa13.87□□□□□ -0.19
SYNE3-202ENST00000553340 DLX1P56177 255 aa13.87□□□□□ -0.19
SYNE3-202ENST00000553340 TMEM97Q5BJF2 176 aa13.87□□□□□ -0.19
SYNE3-202ENST00000553340 MALRD1Q5VYJ5 2156 aa13.87□□□□□ -0.19
SYNE3-202ENST00000553340 ZNF493Q6ZR52 646 aa13.87□□□□□ -0.19
SYNE3-202ENST00000553340 DYNLRB1Q9NP97 96 aa13.87□□□□□ -0.19
SYNE3-202ENST00000553340 THBDP07204 575 aa13.87□□□□□ -0.19
SYNE3-202ENST00000553340 CT45A10P0DMU9 189 aa13.87□□□□□ -0.19
SYNE3-202ENST00000553340 PLGLAQ15195 96 aa13.87□□□□□ -0.19
SYNE3-202ENST00000553340 A0A0G2JNJ9 132 aa13.86□□□□□ -0.19
SYNE3-202ENST00000553340 OR8A1Q8NGG7 326 aa13.86□□□□□ -0.19
SYNE3-202ENST00000553340 Q9UFV3 132 aa13.86□□□□□ -0.19
SYNE3-202ENST00000553340 BOD1L1Q8NFC6 3051 aa13.86□□□□□ -0.19
SYNE3-202ENST00000553340 GAGE12BA1L429 117 aa13.86□□□□□ -0.19
SYNE3-202ENST00000553340 K7EM74 188 aa13.86□□□□□ -0.19
SYNE3-202ENST00000553340 PRB3Q04118 309 aaPredicted RBP13.86□□□□□ -0.19
SYNE3-202ENST00000553340 SERTM2A0A1B0GWG4 89 aa13.85□□□□□ -0.19
SYNE3-202ENST00000553340 FAM106CPP0CH98 169 aa13.85□□□□□ -0.19
SYNE3-202ENST00000553340 FAM106AQ4KMX7 169 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 73.4 ms