RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 FABP1P07148 127 aa7.67□□□□□ -1.18
CD44-227ENST00000528086 SNRPD3P62318 126 aaKnown RBP7.67□□□□□ -1.18
CD44-227ENST00000528086 ZNF705AQ6ZN79 300 aaPredicted RBP7.67□□□□□ -1.18
CD44-227ENST00000528086 PHLDA1Q8WV24 401 aaPredicted RBP7.67□□□□□ -1.18
CD44-227ENST00000528086 TMEM37Q8WXS4 190 aa7.67□□□□□ -1.18
CD44-227ENST00000528086 LINC00052Q96N35 136 aa7.67□□□□□ -1.18
CD44-227ENST00000528086 CLUHP3Q96NS8 147 aa7.67□□□□□ -1.18
CD44-227ENST00000528086 SLC25A22Q9H936 323 aa7.67□□□□□ -1.18
CD44-227ENST00000528086 NPVFQ9HCQ7 196 aa7.67□□□□□ -1.18
CD44-227ENST00000528086 LSM5Q9Y4Y9 91 aaKnown RBP7.67□□□□□ -1.18
CD44-227ENST00000528086 DNAH2Q9P225 4427 aa7.66□□□□□ -1.18
CD44-227ENST00000528086 A0A0J9YX75 114 aa7.66□□□□□ -1.18
CD44-227ENST00000528086 ZNF705FA8MVS1 300 aaPredicted RBP7.66□□□□□ -1.18
CD44-227ENST00000528086 FAM25EA8MYX2 175 aa7.66□□□□□ -1.18
CD44-227ENST00000528086 AGPAT2O15120 278 aa7.66□□□□□ -1.18
CD44-227ENST00000528086 ZNF705DP0CH99 300 aaPredicted RBP7.66□□□□□ -1.18
CD44-227ENST00000528086 ZNF705BP0CI00 300 aaPredicted RBP7.66□□□□□ -1.18
CD44-227ENST00000528086 NUP62P37198 522 aaPredicted RBP7.66□□□□□ -1.18
CD44-227ENST00000528086 ZNF846Q147U1 533 aa7.66□□□□□ -1.18
CD44-227ENST00000528086 VWC2Q2TAL6 325 aa7.66□□□□□ -1.18
CD44-227ENST00000528086 FAM78BQ5VT40 261 aa7.66□□□□□ -1.18
CD44-227ENST00000528086 FOXI2Q6ZQN5 318 aa7.66□□□□□ -1.18
CD44-227ENST00000528086 C1orf158Q8N1D5 194 aa7.66□□□□□ -1.18
CD44-227ENST00000528086 RNF182Q8N6D2 247 aa7.66□□□□□ -1.18
CD44-227ENST00000528086 OR10P1Q8NGE3 313 aa7.66□□□□□ -1.18
CD44-227ENST00000528086 FBXL17Q9UF56 701 aa7.66□□□□□ -1.18
CD44-227ENST00000528086 BIRC6Q9NR09 4857 aa7.66□□□□□ -1.18
CD44-227ENST00000528086 C5orf51A6NDU8 294 aa7.65□□□□□ -1.18
CD44-227ENST00000528086 NUPR2A6NF83 97 aa7.65□□□□□ -1.18
CD44-227ENST00000528086 CRXO43186 299 aaPredicted RBP7.65□□□□□ -1.18
CD44-227ENST00000528086 HYPMO75409 117 aa7.65□□□□□ -1.18
CD44-227ENST00000528086 PRM2P04554 102 aa7.65□□□□□ -1.18
CD44-227ENST00000528086 SNRPCP09234 159 aaKnown RBP7.65□□□□□ -1.18
CD44-227ENST00000528086 PRR20EP86478 221 aa7.65□□□□□ -1.18
CD44-227ENST00000528086 PRR20CP86479 221 aa7.65□□□□□ -1.18
CD44-227ENST00000528086 PRR20DP86480 221 aa7.65□□□□□ -1.18
CD44-227ENST00000528086 PRR20BP86481 221 aa7.65□□□□□ -1.18
CD44-227ENST00000528086 PRR20AP86496 221 aa7.65□□□□□ -1.18
CD44-227ENST00000528086 TEPPQ6URK8 271 aa7.65□□□□□ -1.18
CD44-227ENST00000528086 TMEM252Q8N6L7 170 aa7.65□□□□□ -1.18
CD44-227ENST00000528086 C11orf45Q8TAV5 145 aa7.65□□□□□ -1.18
CD44-227ENST00000528086 PPP1R14BQ96C90 147 aa7.65□□□□□ -1.18
CD44-227ENST00000528086 MARVELD1Q9BSK0 173 aa7.65□□□□□ -1.18
CD44-227ENST00000528086 TMEM147Q9BVK8 224 aa7.65□□□□□ -1.18
CD44-227ENST00000528086 GGACTQ9BVM4 153 aa7.65□□□□□ -1.18
CD44-227ENST00000528086 ARL6Q9H0F7 186 aa7.65□□□□□ -1.18
CD44-227ENST00000528086 HIGD1AQ9Y241 93 aa7.65□□□□□ -1.18
CD44-227ENST00000528086 A0A087X0K7 114 aa7.64□□□□□ -1.19
CD44-227ENST00000528086 MIFP14174 115 aa7.64□□□□□ -1.19
CD44-227ENST00000528086 GALR1P47211 349 aa7.64□□□□□ -1.19
CD44-227ENST00000528086 H2BFSP57053 126 aa7.64□□□□□ -1.19
CD44-227ENST00000528086 SELENOTP62341 195 aa7.64□□□□□ -1.19
CD44-227ENST00000528086 C12orf74Q32Q52 190 aa7.64□□□□□ -1.19
CD44-227ENST00000528086 TMEM41BQ5BJD5 291 aa7.64□□□□□ -1.19
CD44-227ENST00000528086 MIC13Q5XKP0 118 aa7.64□□□□□ -1.19
CD44-227ENST00000528086 MZT2BQ6NZ67 158 aa7.64□□□□□ -1.19
CD44-227ENST00000528086 ZNF767PQ75MW2 155 aa7.64□□□□□ -1.19
CD44-227ENST00000528086 TMEM217Q8N7C4 229 aa7.64□□□□□ -1.19
CD44-227ENST00000528086 RNF126Q9BV68 326 aa7.64□□□□□ -1.19
CD44-227ENST00000528086 ARV1Q9H2C2 271 aa7.64□□□□□ -1.19
CD44-227ENST00000528086 LYRM2Q9NU23 88 aaPredicted RBP7.64□□□□□ -1.19
CD44-227ENST00000528086 OR5AC2Q9NZP5 309 aa7.64□□□□□ -1.19
CD44-227ENST00000528086 WDR83OSQ9Y284 106 aa7.64□□□□□ -1.19
CD44-227ENST00000528086 DNAH17Q9UFH2 4485 aa7.63□□□□□ -1.19
CD44-227ENST00000528086 FAT2Q9NYQ8 4349 aa7.63□□□□□ -1.19
CD44-227ENST00000528086 TRAV5A0A0B4J249 113 aa7.63□□□□□ -1.19
CD44-227ENST00000528086 INMT-MINDY4F8WBC2 141 aa7.63□□□□□ -1.19
CD44-227ENST00000528086 H3BQ15 152 aa7.63□□□□□ -1.19
CD44-227ENST00000528086 SLC17A3O00476 420 aa7.63□□□□□ -1.19
CD44-227ENST00000528086 OR5G3P0C626 314 aa7.63□□□□□ -1.19
CD44-227ENST00000528086 CXCL3P19876 107 aa7.63□□□□□ -1.19
CD44-227ENST00000528086 ID1P41134 155 aa7.63□□□□□ -1.19
CD44-227ENST00000528086 OPCMLQ14982 345 aa7.63□□□□□ -1.19
CD44-227ENST00000528086 Q6ZTC4 211 aa7.63□□□□□ -1.19
CD44-227ENST00000528086 C16orf92Q96LL3 132 aa7.63□□□□□ -1.19
CD44-227ENST00000528086 NEU1Q99519 415 aa7.63□□□□□ -1.19
CD44-227ENST00000528086 HRH4Q9H3N8 390 aa7.63□□□□□ -1.19
CD44-227ENST00000528086 PLA2G2EQ9NZK7 142 aa7.63□□□□□ -1.19
CD44-227ENST00000528086 PFDN2Q9UHV9 154 aa7.63□□□□□ -1.19
CD44-227ENST00000528086 APLNQ9ULZ1 77 aa7.63□□□□□ -1.19
CD44-227ENST00000528086 PRAC2D3DTV9 90 aa7.62□□□□□ -1.19
CD44-227ENST00000528086 H3BTX0 84 aa7.62□□□□□ -1.19
CD44-227ENST00000528086 L7N2F9 121 aa7.62□□□□□ -1.19
CD44-227ENST00000528086 GOSR2O14653 212 aa7.62□□□□□ -1.19
CD44-227ENST00000528086 JTBO76095 146 aa7.62□□□□□ -1.19
CD44-227ENST00000528086 IGLC2P0DOY2 106 aa7.62□□□□□ -1.19
CD44-227ENST00000528086 MEOX2P50222 304 aa7.62□□□□□ -1.19
CD44-227ENST00000528086 SULT1A1P50225 295 aa7.62□□□□□ -1.19
CD44-227ENST00000528086 CAV2P51636 162 aa7.62□□□□□ -1.19
CD44-227ENST00000528086 CNN1P51911 297 aaKnown RBP7.62□□□□□ -1.19
CD44-227ENST00000528086 S100A10P60903 97 aa7.62□□□□□ -1.19
CD44-227ENST00000528086 VAMP2P63027 116 aa7.62□□□□□ -1.19
CD44-227ENST00000528086 PSG9Q00887 426 aa7.62□□□□□ -1.19
CD44-227ENST00000528086 NHLH2Q02577 135 aa7.62□□□□□ -1.19
CD44-227ENST00000528086 KIR3DS1Q14943 382 aa7.62□□□□□ -1.19
CD44-227ENST00000528086 GCSAMLQ5JQS6 135 aa7.62□□□□□ -1.19
CD44-227ENST00000528086 LINC00305Q7Z4B0 112 aa7.62□□□□□ -1.19
CD44-227ENST00000528086 OR11H7Q8NGC8 314 aa7.62□□□□□ -1.19
CD44-227ENST00000528086 OR4B1Q8NGF8 309 aa7.62□□□□□ -1.19
CD44-227ENST00000528086 ENKURQ8TC29 256 aa7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 99.7 ms