RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 ASCL2Q99929 193 aa9.35□□□□□ -0.91
CD44-209ENST00000433892 UQCR10Q9UDW1 63 aa9.35□□□□□ -0.91
CD44-209ENST00000433892 SH2D7A6NKC9 451 aaPredicted RBP9.35□□□□□ -0.91
CD44-209ENST00000433892 K7EIM0 57 aa9.35□□□□□ -0.91
CD44-209ENST00000433892 IGLV2-11P01706 119 aa9.35□□□□□ -0.91
CD44-209ENST00000433892 ARF6P62330 175 aa9.35□□□□□ -0.91
CD44-209ENST00000433892 Q6ZN92 141 aa9.35□□□□□ -0.91
CD44-209ENST00000433892 RBPMS2Q6ZRY4 209 aaKnown RBP9.35□□□□□ -0.91
CD44-209ENST00000433892 KIR3DL3Q8N743 410 aa9.35□□□□□ -0.91
CD44-209ENST00000433892 TMEM208Q9BTX3 173 aa9.35□□□□□ -0.91
CD44-209ENST00000433892 LPAR2Q9HBW0 351 aa9.35□□□□□ -0.91
CD44-209ENST00000433892 CLEC5AQ9NY25 188 aa9.35□□□□□ -0.91
CD44-209ENST00000433892 TMEM14CQ9P0S9 112 aa9.35□□□□□ -0.91
CD44-209ENST00000433892 BTF3P20290 206 aaKnown RBP9.34□□□□□ -0.91
CD44-209ENST00000433892 NBL1P41271 181 aa9.34□□□□□ -0.91
CD44-209ENST00000433892 TFPI2P48307 235 aa9.34□□□□□ -0.91
CD44-209ENST00000433892 KLF17Q5JT82 389 aaPredicted RBP9.34□□□□□ -0.91
CD44-209ENST00000433892 OR8B3Q8NGG8 313 aa9.34□□□□□ -0.91
CD44-209ENST00000433892 OR8B2Q96RD0 313 aa9.34□□□□□ -0.91
CD44-209ENST00000433892 S4R3C0 116 aa9.34□□□□□ -0.91
CD44-209ENST00000433892 C2orf70A6NJV1 201 aa9.34□□□□□ -0.91
CD44-209ENST00000433892 K7ENP7 123 aa9.34□□□□□ -0.91
CD44-209ENST00000433892 LIPFP07098 398 aa9.34□□□□□ -0.91
CD44-209ENST00000433892 IGF2RP11717 2491 aa9.33□□□□□ -0.92
CD44-209ENST00000433892 NPIPB6E9PJ23 425 aa9.33□□□□□ -0.92
CD44-209ENST00000433892 HTR1DP28221 377 aa9.33□□□□□ -0.92
CD44-209ENST00000433892 SPATA12Q7Z6I5 190 aa9.33□□□□□ -0.92
CD44-209ENST00000433892 RBM14Q96PK6 669 aaKnown RBP9.33□□□□□ -0.92
CD44-209ENST00000433892 RNF5Q99942 180 aa9.33□□□□□ -0.92
CD44-209ENST00000433892 GFRA4Q9GZZ7 299 aa9.33□□□□□ -0.92
CD44-209ENST00000433892 SOX21Q9Y651 276 aaPredicted RBP9.33□□□□□ -0.92
CD44-209ENST00000433892 TRBV19A0A075B6N1 114 aa9.33□□□□□ -0.92
CD44-209ENST00000433892 A0A1W2PRD5 423 aa9.33□□□□□ -0.92
CD44-209ENST00000433892 A0A1W2PRF3 423 aa9.33□□□□□ -0.92
CD44-209ENST00000433892 A0A1W2PRM7 423 aa9.33□□□□□ -0.92
CD44-209ENST00000433892 ZNF785A8K8V0 405 aa9.33□□□□□ -0.92
CD44-209ENST00000433892 HNRNPA3P51991 378 aaKnown RBP9.33□□□□□ -0.92
CD44-209ENST00000433892 KLRD1Q13241 179 aa9.33□□□□□ -0.92
CD44-209ENST00000433892 FBLN7Q53RD9 439 aa9.33□□□□□ -0.92
CD44-209ENST00000433892 BPIFA4PQ86YQ2 179 aa9.33□□□□□ -0.92
CD44-209ENST00000433892 KLHDC1Q8N7A1 406 aa9.33□□□□□ -0.92
CD44-209ENST00000433892 SHANK2-AS3Q9BTD1 123 aa9.33□□□□□ -0.92
CD44-209ENST00000433892 SCNM1Q9BWG6 230 aa9.33□□□□□ -0.92
CD44-209ENST00000433892 ATRXP46100 2492 aa9.32□□□□□ -0.92
CD44-209ENST00000433892 CHEK1O14757 476 aa9.32□□□□□ -0.92
CD44-209ENST00000433892 NBR2O15453 112 aa9.32□□□□□ -0.92
CD44-209ENST00000433892 IL4P05112 153 aa9.32□□□□□ -0.92
CD44-209ENST00000433892 COL5A1-AS1Q5SY13 56 aa9.32□□□□□ -0.92
CD44-209ENST00000433892 ZNF491Q8N8L2 437 aa9.32□□□□□ -0.92
CD44-209ENST00000433892 LY6G5BQ8NDX9 201 aa9.32□□□□□ -0.92
CD44-209ENST00000433892 OR4F17Q8NGA8 305 aa9.32□□□□□ -0.92
CD44-209ENST00000433892 ZC2HC1AQ96GY0 325 aa9.32□□□□□ -0.92
CD44-209ENST00000433892 DPM3Q9P2X0 92 aa9.32□□□□□ -0.92
CD44-209ENST00000433892 H3BRN7 92 aa9.31□□□□□ -0.92
CD44-209ENST00000433892 DLEU1O43261 78 aa9.31□□□□□ -0.92
CD44-209ENST00000433892 HOXB4P17483 251 aaPredicted RBP9.31□□□□□ -0.92
CD44-209ENST00000433892 HES1Q14469 280 aa9.31□□□□□ -0.92
CD44-209ENST00000433892 FAM120AOSQ5T036 256 aa9.31□□□□□ -0.92
CD44-209ENST00000433892 BCL6BQ8N143 479 aaPredicted RBP9.31□□□□□ -0.92
CD44-209ENST00000433892 RNF125Q96EQ8 232 aa9.31□□□□□ -0.92
CD44-209ENST00000433892 SRSF8Q9BRL6 282 aaKnown RBP9.31□□□□□ -0.92
CD44-209ENST00000433892 TRAV9-2A0A087WT02 112 aa9.31□□□□□ -0.92
CD44-209ENST00000433892 LOC102724200A0A096LPH7 203 aaPredicted RBP9.31□□□□□ -0.92
CD44-209ENST00000433892 IGHV1-24A0A0C4DH33 117 aa9.31□□□□□ -0.92
CD44-209ENST00000433892 FAM231BA6NCW3 169 aa9.31□□□□□ -0.92
CD44-209ENST00000433892 APOHP02749 345 aaPredicted RBP9.31□□□□□ -0.92
CD44-209ENST00000433892 NPSP0C0P6 89 aa9.31□□□□□ -0.92
CD44-209ENST00000433892 FOSL1P15407 271 aa9.31□□□□□ -0.92
CD44-209ENST00000433892 FCGR2BP31994 310 aaPredicted RBP9.31□□□□□ -0.92
CD44-209ENST00000433892 ZNF138P52744 262 aa9.31□□□□□ -0.92
CD44-209ENST00000433892 CDSNQ15517 529 aa9.31□□□□□ -0.92
CD44-209ENST00000433892 SIGLEC15Q6ZMC9 328 aa9.31□□□□□ -0.92
CD44-209ENST00000433892 LINC00173Q6ZV60 143 aa9.31□□□□□ -0.92
CD44-209ENST00000433892 STPG4Q8N801 248 aa9.31□□□□□ -0.92
CD44-209ENST00000433892 CFHR4Q92496 578 aa9.31□□□□□ -0.92
CD44-209ENST00000433892 TMEM70Q9BUB7 260 aa9.31□□□□□ -0.92
CD44-209ENST00000433892 LAMTOR2Q9Y2Q5 125 aa9.31□□□□□ -0.92
CD44-209ENST00000433892 M0R3E3 92 aa9.3□□□□□ -0.92
CD44-209ENST00000433892 HLA-DRB1P01911 266 aa9.3□□□□□ -0.92
CD44-209ENST00000433892 IGLL1P15814 213 aa9.3□□□□□ -0.92
CD44-209ENST00000433892 CYB5R2Q6BCY4 276 aa9.3□□□□□ -0.92
CD44-209ENST00000433892 OVOL3O00110 214 aa9.3□□□□□ -0.92
CD44-209ENST00000433892 HAX1O00165 279 aa9.3□□□□□ -0.92
CD44-209ENST00000433892 CCL21O00585 134 aa9.3□□□□□ -0.92
CD44-209ENST00000433892 LINC00614P0C842 121 aa9.3□□□□□ -0.92
CD44-209ENST00000433892 TSPOP30536 169 aa9.3□□□□□ -0.92
CD44-209ENST00000433892 OR11H6Q8NGC7 330 aa9.3□□□□□ -0.92
CD44-209ENST00000433892 PSG8Q9UQ74 426 aa9.3□□□□□ -0.92
CD44-209ENST00000433892 GOLT1BQ9Y3E0 138 aa9.3□□□□□ -0.92
CD44-209ENST00000433892 GNG7O60262 68 aa9.29□□□□□ -0.92
CD44-209ENST00000433892 ARMS2P0C7Q2 107 aa9.29□□□□□ -0.92
CD44-209ENST00000433892 FAM162BQ5T6X4 162 aa9.29□□□□□ -0.92
CD44-209ENST00000433892 C16orf54Q6UWD8 224 aa9.29□□□□□ -0.92
CD44-209ENST00000433892 TMEM75Q8N9X5 138 aa9.29□□□□□ -0.92
CD44-209ENST00000433892 CHCHD1Q96BP2 118 aaKnown RBP9.29□□□□□ -0.92
CD44-209ENST00000433892 NDFIP1Q9BT67 221 aa9.29□□□□□ -0.92
CD44-209ENST00000433892 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.29□□□□□ -0.92
CD44-209ENST00000433892 A0A1B0GUT8 65 aa9.29□□□□□ -0.92
CD44-209ENST00000433892 MRPS12O15235 138 aaKnown RBP9.29□□□□□ -0.92
CD44-209ENST00000433892 NDUFA3O95167 84 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms