RNA–Protein interactions for RNA: ENST00000391813.5

SHANK1-203, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 1 (best) BASIC

Gene SHANK1, Length 4,785 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-203ENST00000391813 FAM168AQ92567 244 aa16.1■□□□□ 0.17
SHANK1-203ENST00000391813 V9GYV3 84 aa16.1■□□□□ 0.17
SHANK1-203ENST00000391813 RNASE1P07998 156 aaKnown RBP16.1■□□□□ 0.17
SHANK1-203ENST00000391813 PIP4P1Q86T03 277 aa16.1■□□□□ 0.17
SHANK1-203ENST00000391813 PTPRDP23468 1912 aa16.1■□□□□ 0.17
SHANK1-203ENST00000391813 PGPEP1Q9NXJ5 209 aa16.1■□□□□ 0.17
SHANK1-203ENST00000391813 F8W1H4 67 aa16.09■□□□□ 0.17
SHANK1-203ENST00000391813 PRTN3P24158 256 aa16.09■□□□□ 0.17
SHANK1-203ENST00000391813 C11orf52Q96A22 123 aa16.09■□□□□ 0.17
SHANK1-203ENST00000391813 SRSF6Q13247 344 aaKnown RBP16.09■□□□□ 0.17
SHANK1-203ENST00000391813 ZNF329Q86UD4 541 aa16.09■□□□□ 0.17
SHANK1-203ENST00000391813 IGHV3-49A0A0A0MS15 119 aa16.09■□□□□ 0.17
SHANK1-203ENST00000391813 EXOC3-AS1Q8N2X6 119 aa16.09■□□□□ 0.17
SHANK1-203ENST00000391813 TRAV8-1A0A0A6YYK1 113 aa16.09■□□□□ 0.17
SHANK1-203ENST00000391813 TRGV3P03979 118 aa16.09■□□□□ 0.17
SHANK1-203ENST00000391813 PINLYPA6NC86 204 aa16.08■□□□□ 0.17
SHANK1-203ENST00000391813 IGHV3-23P01764 117 aa16.08■□□□□ 0.17
SHANK1-203ENST00000391813 CNTFRP26992 372 aa16.08■□□□□ 0.17
SHANK1-203ENST00000391813 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP16.08■□□□□ 0.16
SHANK1-203ENST00000391813 PSMB11A5LHX3 300 aa16.08■□□□□ 0.16
SHANK1-203ENST00000391813 RRN3P1Q2M238 152 aa16.08■□□□□ 0.16
SHANK1-203ENST00000391813 WDR81Q562E7 1941 aa16.08■□□□□ 0.16
SHANK1-203ENST00000391813 SCRT1Q9BWW7 348 aa16.07■□□□□ 0.16
SHANK1-203ENST00000391813 SPTBN1Q01082 2364 aaKnown RBP16.07■□□□□ 0.16
SHANK1-203ENST00000391813 TRBV7-9A0A0J9YWB2 115 aa16.07■□□□□ 0.16
SHANK1-203ENST00000391813 PPIFP30405 207 aaKnown RBP16.07■□□□□ 0.16
SHANK1-203ENST00000391813 C20orf204Q6ZNR8 217 aa16.07■□□□□ 0.16
SHANK1-203ENST00000391813 ZNF562Q6V9R5 426 aa16.07■□□□□ 0.16
SHANK1-203ENST00000391813 IGHV3-66A0A0C4DH42 116 aa16.07■□□□□ 0.16
SHANK1-203ENST00000391813 PLSCR4Q9NRQ2 329 aa16.07■□□□□ 0.16
SHANK1-203ENST00000391813 TFF1P04155 84 aa16.06■□□□□ 0.16
SHANK1-203ENST00000391813 VDAC2P45880 294 aaPredicted RBP16.06■□□□□ 0.16
SHANK1-203ENST00000391813 C10orf55Q5SWW7 151 aa16.06■□□□□ 0.16
SHANK1-203ENST00000391813 PLEKHB2Q96CS7 222 aa16.06■□□□□ 0.16
SHANK1-203ENST00000391813 MCRIP2Q9BUT9 160 aaKnown RBP16.06■□□□□ 0.16
SHANK1-203ENST00000391813 TSSC4Q9Y5U2 329 aaPredicted RBP16.06■□□□□ 0.16
SHANK1-203ENST00000391813 M0R2P5 195 aa16.06■□□□□ 0.16
SHANK1-203ENST00000391813 RNASE2P10153 161 aaKnown RBP16.06■□□□□ 0.16
SHANK1-203ENST00000391813 TMEM101Q96IK0 257 aa16.06■□□□□ 0.16
SHANK1-203ENST00000391813 Q0VFX4 171 aa16.06■□□□□ 0.16
SHANK1-203ENST00000391813 BVES-AS1Q5T3Y7 98 aa16.06■□□□□ 0.16
SHANK1-203ENST00000391813 Q86TA4 180 aa16.06■□□□□ 0.16
SHANK1-203ENST00000391813 IGHG3P01860 377 aa16.05■□□□□ 0.16
SHANK1-203ENST00000391813 TMEM158Q8WZ71 300 aa16.05■□□□□ 0.16
SHANK1-203ENST00000391813 CYYR1Q96J86 154 aa16.05■□□□□ 0.16
SHANK1-203ENST00000391813 ABCA1O95477 2261 aa16.05■□□□□ 0.16
SHANK1-203ENST00000391813 SMIM27A0A1W2PRY6 76 aa16.05■□□□□ 0.16
SHANK1-203ENST00000391813 RBMY1BA6NDE4 496 aaKnown RBP16.05■□□□□ 0.16
SHANK1-203ENST00000391813 RBMY1EA6NEQ0 496 aaKnown RBP16.05■□□□□ 0.16
SHANK1-203ENST00000391813 RBMY1DP0C7P1 496 aaKnown RBP16.05■□□□□ 0.16
SHANK1-203ENST00000391813 RBMY1A1P0DJD3 496 aaKnown RBP16.05■□□□□ 0.16
SHANK1-203ENST00000391813 RBMY1CP0DJD4 496 aa16.05■□□□□ 0.16
SHANK1-203ENST00000391813 RPL15P61313 204 aaKnown RBP16.05■□□□□ 0.16
SHANK1-203ENST00000391813 TRBV20-1A0A075B6N2 111 aa16.05■□□□□ 0.16
SHANK1-203ENST00000391813 MLNRO43193 412 aa16.05■□□□□ 0.16
SHANK1-203ENST00000391813 FOXG1P55316 489 aaPredicted RBP16.05■□□□□ 0.16
SHANK1-203ENST00000391813 ATP6V0BQ99437 205 aa16.05■□□□□ 0.16
SHANK1-203ENST00000391813 PHF3Q92576 2039 aaKnown RBP16.05■□□□□ 0.16
SHANK1-203ENST00000391813 ETV2O00321 342 aaPredicted RBP16.05■□□□□ 0.16
SHANK1-203ENST00000391813 RNASE4P34096 147 aaKnown RBP16.05■□□□□ 0.16
SHANK1-203ENST00000391813 LINC00479Q96M42 142 aa16.05■□□□□ 0.16
SHANK1-203ENST00000391813 SLAQ13239 276 aa16.04■□□□□ 0.16
SHANK1-203ENST00000391813 LGALS9BQ3B8N2 356 aa16.04■□□□□ 0.16
SHANK1-203ENST00000391813 LGALS9CQ6DKI2 356 aa16.04■□□□□ 0.16
SHANK1-203ENST00000391813 SLC25A15Q9Y619 301 aa16.04■□□□□ 0.16
SHANK1-203ENST00000391813 LY6G6EA0A0G2JKS1 128 aa16.04■□□□□ 0.16
SHANK1-203ENST00000391813 AMN1Q8IY45 258 aa16.04■□□□□ 0.16
SHANK1-203ENST00000391813 U3KQA8 63 aa16.04■□□□□ 0.16
SHANK1-203ENST00000391813 ETDBQ3ZM63 59 aa16.04■□□□□ 0.16
SHANK1-203ENST00000391813 CLEC19AQ6UXS0 136 aa16.04■□□□□ 0.16
SHANK1-203ENST00000391813 IGHV3OR16-8A0A075B7F1 116 aa16.03■□□□□ 0.16
SHANK1-203ENST00000391813 DSCR9P59020 149 aa16.03■□□□□ 0.16
SHANK1-203ENST00000391813 TMEM155Q4W5P6 130 aa16.03■□□□□ 0.16
SHANK1-203ENST00000391813 TICRRQ7Z2Z1 1910 aa16.03■□□□□ 0.16
SHANK1-203ENST00000391813 IGHV2-70DA0A0C4DH43 119 aa16.03■□□□□ 0.16
SHANK1-203ENST00000391813 C2orf82Q6UX34 121 aa16.03■□□□□ 0.16
SHANK1-203ENST00000391813 ZNF114Q8NC26 417 aa16.03■□□□□ 0.16
SHANK1-203ENST00000391813 NUP37Q8NFH4 326 aa16.03■□□□□ 0.16
SHANK1-203ENST00000391813 RNF5Q99942 180 aa16.03■□□□□ 0.16
SHANK1-203ENST00000391813 DOCK9Q9BZ29 2069 aa16.03■□□□□ 0.16
SHANK1-203ENST00000391813 BDP1A6H8Y1 2624 aa16.03■□□□□ 0.16
SHANK1-203ENST00000391813 ZFHX2Q9C0A1 2572 aaPredicted RBP16.03■□□□□ 0.16
SHANK1-203ENST00000391813 IGLC7A0M8Q6 106 aa16.03■□□□□ 0.16
SHANK1-203ENST00000391813 WIPF3A6NGB9 483 aa16.03■□□□□ 0.16
SHANK1-203ENST00000391813 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP16.03■□□□□ 0.16
SHANK1-203ENST00000391813 SH2D1AO60880 128 aa16.03■□□□□ 0.16
SHANK1-203ENST00000391813 COLCA1Q6ZS62 124 aa16.03■□□□□ 0.16
SHANK1-203ENST00000391813 DIDO1Q9BTC0 2240 aaKnown RBP16.03■□□□□ 0.16
SHANK1-203ENST00000391813 PPDPFLQ8WWR9 84 aa16.02■□□□□ 0.16
SHANK1-203ENST00000391813 A0A1W2PPM0 123 aa16.02■□□□□ 0.16
SHANK1-203ENST00000391813 GHRHP01286 108 aa16.02■□□□□ 0.16
SHANK1-203ENST00000391813 CENPVQ7Z7K6 275 aaPredicted RBP16.02■□□□□ 0.15
SHANK1-203ENST00000391813 CD177Q8N6Q3 437 aa16.02■□□□□ 0.15
SHANK1-203ENST00000391813 SIVA1O15304 175 aa16.02■□□□□ 0.15
SHANK1-203ENST00000391813 ARMS2P0C7Q2 107 aa16.02■□□□□ 0.15
SHANK1-203ENST00000391813 PRR31Q5SQ13 230 aa16.02■□□□□ 0.15
SHANK1-203ENST00000391813 GAGE12HA6NDE8 117 aa16.01■□□□□ 0.15
SHANK1-203ENST00000391813 MBD3L4A6NDZ8 208 aaPredicted RBP16.01■□□□□ 0.15
SHANK1-203ENST00000391813 MBD3L3A6NE82 208 aaPredicted RBP16.01■□□□□ 0.15
SHANK1-203ENST00000391813 MBD3L5A6NJ08 208 aaPredicted RBP16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms