RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 ZNF705FA8MVS1 300 aaPredicted RBP16.38■□□□□ 0.21
CCDC88B-203ENST00000359902 ZNF705DP0CH99 300 aaPredicted RBP16.38■□□□□ 0.21
CCDC88B-203ENST00000359902 ZNF705BP0CI00 300 aaPredicted RBP16.38■□□□□ 0.21
CCDC88B-203ENST00000359902 NUTF2P61970 127 aaKnown RBP16.38■□□□□ 0.21
CCDC88B-203ENST00000359902 Q86TA4 180 aa16.38■□□□□ 0.21
CCDC88B-203ENST00000359902 TRAV30A0A087WSZ9 112 aa16.37■□□□□ 0.21
CCDC88B-203ENST00000359902 GNG7O60262 68 aa16.37■□□□□ 0.21
CCDC88B-203ENST00000359902 P01737 135 aa16.37■□□□□ 0.21
CCDC88B-203ENST00000359902 C1orf194Q5T5A4 169 aa16.37■□□□□ 0.21
CCDC88B-203ENST00000359902 GOLT1AQ6ZVE7 132 aa16.37■□□□□ 0.21
CCDC88B-203ENST00000359902 TCF24Q7RTU0 167 aa16.37■□□□□ 0.21
CCDC88B-203ENST00000359902 PRORYQ9H606 182 aa16.37■□□□□ 0.21
CCDC88B-203ENST00000359902 RNF24Q9Y225 148 aa16.37■□□□□ 0.21
CCDC88B-203ENST00000359902 A0A1B0GXF2 115 aa16.37■□□□□ 0.21
CCDC88B-203ENST00000359902 F8W735 103 aaPredicted RBP16.37■□□□□ 0.21
CCDC88B-203ENST00000359902 TOX4O94842 621 aa16.37■□□□□ 0.21
CCDC88B-203ENST00000359902 MFAP4P55083 255 aa16.37■□□□□ 0.21
CCDC88B-203ENST00000359902 CT83Q5H943 113 aa16.37■□□□□ 0.21
CCDC88B-203ENST00000359902 ATP5L2Q7Z4Y8 100 aa16.37■□□□□ 0.21
CCDC88B-203ENST00000359902 OR4F17Q8NGA8 305 aa16.37■□□□□ 0.21
CCDC88B-203ENST00000359902 KCNS1Q96KK3 526 aa16.37■□□□□ 0.21
CCDC88B-203ENST00000359902 A8MWL6 223 aa16.36■□□□□ 0.21
CCDC88B-203ENST00000359902 MRPS12O15235 138 aaKnown RBP16.36■□□□□ 0.21
CCDC88B-203ENST00000359902 SFTPCP11686 197 aa16.36■□□□□ 0.21
CCDC88B-203ENST00000359902 FCGR2BP31994 310 aaPredicted RBP16.36■□□□□ 0.21
CCDC88B-203ENST00000359902 BCL6BQ8N143 479 aaPredicted RBP16.36■□□□□ 0.21
CCDC88B-203ENST00000359902 GTSF1Q8WW33 167 aa16.36■□□□□ 0.21
CCDC88B-203ENST00000359902 ZNF48Q96MX3 618 aaPredicted RBP16.36■□□□□ 0.21
CCDC88B-203ENST00000359902 BTF3P20290 206 aaKnown RBP16.36■□□□□ 0.21
CCDC88B-203ENST00000359902 CAMPP49913 170 aa16.36■□□□□ 0.21
CCDC88B-203ENST00000359902 EFNA4P52798 201 aa16.36■□□□□ 0.21
CCDC88B-203ENST00000359902 CHD8Q9HCK8 2581 aa16.36■□□□□ 0.21
CCDC88B-203ENST00000359902 TMEM11P17152 192 aa16.35■□□□□ 0.21
CCDC88B-203ENST00000359902 SIGLEC15Q6ZMC9 328 aa16.35■□□□□ 0.21
CCDC88B-203ENST00000359902 PRNTQ86SH4 94 aa16.35■□□□□ 0.21
CCDC88B-203ENST00000359902 CIARTQ8N365 385 aaPredicted RBP16.35■□□□□ 0.21
CCDC88B-203ENST00000359902 C18orf32Q8TCD1 76 aa16.35■□□□□ 0.21
CCDC88B-203ENST00000359902 ITLN2Q8WWU7 325 aaPredicted RBP16.35■□□□□ 0.21
CCDC88B-203ENST00000359902 DAZAP1Q96EP5 407 aaKnown RBP16.35■□□□□ 0.21
CCDC88B-203ENST00000359902 TBL2Q9Y4P3 447 aaKnown RBP16.35■□□□□ 0.21
CCDC88B-203ENST00000359902 RNF114Q9Y508 228 aa16.35■□□□□ 0.21
CCDC88B-203ENST00000359902 NCOR2Q9Y618 2525 aa16.35■□□□□ 0.21
CCDC88B-203ENST00000359902 HLA-DRB1P01911 266 aa16.35■□□□□ 0.21
CCDC88B-203ENST00000359902 EGR2P11161 476 aaPredicted RBP16.35■□□□□ 0.21
CCDC88B-203ENST00000359902 TOMM20LQ6UXN7 152 aa16.35■□□□□ 0.21
CCDC88B-203ENST00000359902 Q71RC1 249 aaPredicted RBP16.35■□□□□ 0.21
CCDC88B-203ENST00000359902 SSBP4Q9BWG4 385 aaPredicted RBP16.35■□□□□ 0.21
CCDC88B-203ENST00000359902 FBXL7Q9UJT9 491 aa16.35■□□□□ 0.21
CCDC88B-203ENST00000359902 IGHV2-70DA0A0C4DH43 119 aa16.34■□□□□ 0.21
CCDC88B-203ENST00000359902 TRBV6-1A0A0K0K1D8 114 aa16.34■□□□□ 0.21
CCDC88B-203ENST00000359902 OR2J3O76001 311 aa16.34■□□□□ 0.21
CCDC88B-203ENST00000359902 LYPD1Q8N2G4 141 aa16.34■□□□□ 0.21
CCDC88B-203ENST00000359902 ZNF414Q96IQ9 312 aa16.34■□□□□ 0.21
CCDC88B-203ENST00000359902 WNK2Q9Y3S1 2297 aa16.34■□□□□ 0.21
CCDC88B-203ENST00000359902 KIR2DL5BA0A0G2JN68 375 aa16.34■□□□□ 0.21
CCDC88B-203ENST00000359902 KIR2DL5BA0A0G2JPC4 375 aa16.34■□□□□ 0.21
CCDC88B-203ENST00000359902 NPIPB6E9PJ23 425 aa16.34■□□□□ 0.21
CCDC88B-203ENST00000359902 NDUFB8O95169 186 aa16.34■□□□□ 0.21
CCDC88B-203ENST00000359902 AMTP48728 403 aa16.34■□□□□ 0.21
CCDC88B-203ENST00000359902 TEX43Q6ZNM6 134 aa16.34■□□□□ 0.21
CCDC88B-203ENST00000359902 KIR2DL5AQ8N109 375 aa16.34■□□□□ 0.21
CCDC88B-203ENST00000359902 TMEM190Q8WZ59 177 aa16.34■□□□□ 0.21
CCDC88B-203ENST00000359902 AJUBAQ96IF1 538 aa16.34■□□□□ 0.21
CCDC88B-203ENST00000359902 NRN1Q9NPD7 142 aa16.34■□□□□ 0.21
CCDC88B-203ENST00000359902 C21orf62Q9NYP8 219 aa16.34■□□□□ 0.21
CCDC88B-203ENST00000359902 IGHV7-81A0A0B4J1V7 117 aa16.33■□□□□ 0.2
CCDC88B-203ENST00000359902 ZNF324O75467 553 aaPredicted RBP16.33■□□□□ 0.2
CCDC88B-203ENST00000359902 TDRG1Q3Y452 100 aa16.33■□□□□ 0.2
CCDC88B-203ENST00000359902 Q56UQ5 140 aa16.33■□□□□ 0.2
CCDC88B-203ENST00000359902 GFRA4Q9GZZ7 299 aa16.33■□□□□ 0.2
CCDC88B-203ENST00000359902 ZNF785A8K8V0 405 aa16.33■□□□□ 0.2
CCDC88B-203ENST00000359902 PMCHP20382 165 aa16.33■□□□□ 0.2
CCDC88B-203ENST00000359902 UQCRFS1P47985 274 aa16.33■□□□□ 0.2
CCDC88B-203ENST00000359902 FAM120AOSQ5T036 256 aa16.33■□□□□ 0.2
CCDC88B-203ENST00000359902 Q8N9W7 124 aa16.33■□□□□ 0.2
CCDC88B-203ENST00000359902 ALKBH7Q9BT30 221 aaPredicted RBP16.33■□□□□ 0.2
CCDC88B-203ENST00000359902 MED13LQ71F56 2210 aa16.33■□□□□ 0.2
CCDC88B-203ENST00000359902 UBE2E1P51965 193 aa16.32■□□□□ 0.2
CCDC88B-203ENST00000359902 HBBP68871 147 aa16.32■□□□□ 0.2
CCDC88B-203ENST00000359902 KLF5Q13887 457 aaPredicted RBP16.32■□□□□ 0.2
CCDC88B-203ENST00000359902 VN1R17PQ8TDU5 208 aa16.32■□□□□ 0.2
CCDC88B-203ENST00000359902 PGLYRP4Q96LB8 373 aa16.32■□□□□ 0.2
CCDC88B-203ENST00000359902 THYN1Q9P016 225 aa16.32■□□□□ 0.2
CCDC88B-203ENST00000359902 CSMD1Q96PZ7 3565 aa16.32■□□□□ 0.2
CCDC88B-203ENST00000359902 C19orf84I3L1E1 186 aa16.31■□□□□ 0.2
CCDC88B-203ENST00000359902 FAM106CPP0CH98 169 aa16.31■□□□□ 0.2
CCDC88B-203ENST00000359902 LMO4P61968 165 aa16.31■□□□□ 0.2
CCDC88B-203ENST00000359902 TMEM75Q8N9X5 138 aa16.31■□□□□ 0.2
CCDC88B-203ENST00000359902 OR2D3Q8NGH3 330 aa16.31■□□□□ 0.2
CCDC88B-203ENST00000359902 IGHV3-23P01764 117 aa16.31■□□□□ 0.2
CCDC88B-203ENST00000359902 COL8A1P27658 744 aa16.31■□□□□ 0.2
CCDC88B-203ENST00000359902 S100A7AQ86SG5 101 aa16.31■□□□□ 0.2
CCDC88B-203ENST00000359902 SOX21Q9Y651 276 aaPredicted RBP16.31■□□□□ 0.2
CCDC88B-203ENST00000359902 FAM231BA6NCW3 169 aa16.3■□□□□ 0.2
CCDC88B-203ENST00000359902 EREGO14944 169 aa16.3■□□□□ 0.2
CCDC88B-203ENST00000359902 KRTDAPP60985 99 aa16.3■□□□□ 0.2
CCDC88B-203ENST00000359902 C16orf54Q6UWD8 224 aa16.3■□□□□ 0.2
CCDC88B-203ENST00000359902 RBPMS2Q6ZRY4 209 aaKnown RBP16.3■□□□□ 0.2
CCDC88B-203ENST00000359902 FAM19A2Q8N3H0 131 aa16.3■□□□□ 0.2
CCDC88B-203ENST00000359902 BPESC1Q9GZL8 116 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 127.6 ms