RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 ATP5L2Q7Z4Y8 100 aa17.18■□□□□ 0.34
SHMT1-202ENST00000352886 DTX2Q86UW9 622 aa17.18■□□□□ 0.34
SHMT1-202ENST00000352886 DYNAPQ8N1N2 210 aa17.18■□□□□ 0.34
SHMT1-202ENST00000352886 ZNF491Q8N8L2 437 aa17.18■□□□□ 0.34
SHMT1-202ENST00000352886 RNF125Q96EQ8 232 aa17.18■□□□□ 0.34
SHMT1-202ENST00000352886 NRN1Q9NPD7 142 aa17.18■□□□□ 0.34
SHMT1-202ENST00000352886 ZNF492Q9P255 531 aa17.18■□□□□ 0.34
SHMT1-202ENST00000352886 A0A1W2PPR1 153 aa17.18■□□□□ 0.34
SHMT1-202ENST00000352886 H3BRN7 92 aa17.18■□□□□ 0.34
SHMT1-202ENST00000352886 IL4P05112 153 aa17.18■□□□□ 0.34
SHMT1-202ENST00000352886 KRTDAPP60985 99 aa17.18■□□□□ 0.34
SHMT1-202ENST00000352886 GOLT1AQ6ZVE7 132 aa17.18■□□□□ 0.34
SHMT1-202ENST00000352886 BPIFA4PQ86YQ2 179 aa17.18■□□□□ 0.34
SHMT1-202ENST00000352886 SPTBN4Q9H254 2564 aa17.17■□□□□ 0.34
SHMT1-202ENST00000352886 ZNF324O75467 553 aaPredicted RBP17.17■□□□□ 0.34
SHMT1-202ENST00000352886 DAZAP1Q96EP5 407 aaKnown RBP17.17■□□□□ 0.34
SHMT1-202ENST00000352886 C17orf77Q96MU5 243 aa17.17■□□□□ 0.34
SHMT1-202ENST00000352886 A0A1B0GXF2 115 aa17.17■□□□□ 0.34
SHMT1-202ENST00000352886 NCBP2LA6PVI3 153 aaKnown RBP17.17■□□□□ 0.34
SHMT1-202ENST00000352886 A8MWL6 223 aa17.17■□□□□ 0.34
SHMT1-202ENST00000352886 CBY1Q9Y3M2 126 aa17.17■□□□□ 0.34
SHMT1-202ENST00000352886 TRBV19A0A075B6N1 114 aa17.16■□□□□ 0.34
SHMT1-202ENST00000352886 GNG7O60262 68 aa17.16■□□□□ 0.34
SHMT1-202ENST00000352886 IGLV2-11P01706 119 aa17.16■□□□□ 0.34
SHMT1-202ENST00000352886 ZFP36P26651 326 aaKnown RBP17.16■□□□□ 0.34
SHMT1-202ENST00000352886 CT83Q5H943 113 aa17.16■□□□□ 0.34
SHMT1-202ENST00000352886 CCDC144NLQ6NUI1 221 aa17.16■□□□□ 0.34
SHMT1-202ENST00000352886 ZNF562Q6V9R5 426 aa17.16■□□□□ 0.34
SHMT1-202ENST00000352886 PRNTQ86SH4 94 aa17.16■□□□□ 0.34
SHMT1-202ENST00000352886 CIARTQ8N365 385 aaPredicted RBP17.16■□□□□ 0.34
SHMT1-202ENST00000352886 OR4F17Q8NGA8 305 aa17.16■□□□□ 0.34
SHMT1-202ENST00000352886 GTSF1Q8WW33 167 aa17.16■□□□□ 0.34
SHMT1-202ENST00000352886 ARPC1AQ92747 370 aa17.16■□□□□ 0.34
SHMT1-202ENST00000352886 FANCD2OSQ96PS1 177 aa17.16■□□□□ 0.34
SHMT1-202ENST00000352886 NDUFS7O75251 213 aa17.16■□□□□ 0.34
SHMT1-202ENST00000352886 NDPQ00604 133 aa17.16■□□□□ 0.34
SHMT1-202ENST00000352886 OR2D3Q8NGH3 330 aa17.16■□□□□ 0.34
SHMT1-202ENST00000352886 HIVEP3Q5T1R4 2406 aa17.16■□□□□ 0.34
SHMT1-202ENST00000352886 IGLV11-55A0A075B6I3 123 aa17.15■□□□□ 0.34
SHMT1-202ENST00000352886 M0R143 59 aa17.15■□□□□ 0.34
SHMT1-202ENST00000352886 IGLC2P0DOY2 106 aa17.15■□□□□ 0.34
SHMT1-202ENST00000352886 C1orf122Q6ZSJ8 110 aa17.15■□□□□ 0.34
SHMT1-202ENST00000352886 FAM19A2Q8N3H0 131 aa17.15■□□□□ 0.34
SHMT1-202ENST00000352886 NPIPB5A8MRT5 1133 aa17.15■□□□□ 0.34
SHMT1-202ENST00000352886 HOXB4P17483 251 aaPredicted RBP17.15■□□□□ 0.34
SHMT1-202ENST00000352886 PRR31Q5SQ13 230 aa17.15■□□□□ 0.34
SHMT1-202ENST00000352886 Q71RC1 249 aaPredicted RBP17.15■□□□□ 0.34
SHMT1-202ENST00000352886 OR2J3O76001 311 aa17.14■□□□□ 0.33
SHMT1-202ENST00000352886 FCGR2BP31994 310 aaPredicted RBP17.14■□□□□ 0.33
SHMT1-202ENST00000352886 HBBP68871 147 aa17.14■□□□□ 0.33
SHMT1-202ENST00000352886 PGLYRP4Q96LB8 373 aa17.14■□□□□ 0.33
SHMT1-202ENST00000352886 PAM16Q9Y3D7 125 aa17.14■□□□□ 0.33
SHMT1-202ENST00000352886 WI2-2373I1.2A0A1W2PRP0 233 aa17.13■□□□□ 0.33
SHMT1-202ENST00000352886 HLA-DRB1P01911 266 aa17.13■□□□□ 0.33
SHMT1-202ENST00000352886 COL8A1P27658 744 aa17.13■□□□□ 0.33
SHMT1-202ENST00000352886 KIR3DL3Q8N743 410 aa17.13■□□□□ 0.33
SHMT1-202ENST00000352886 RNF24Q9Y225 148 aa17.13■□□□□ 0.33
SHMT1-202ENST00000352886 ASH1LQ9NR48 2969 aaKnown RBP17.13■□□□□ 0.33
SHMT1-202ENST00000352886 NTF3P20783 257 aa17.13■□□□□ 0.33
SHMT1-202ENST00000352886 LY6DQ14210 128 aa17.13■□□□□ 0.33
SHMT1-202ENST00000352886 SIGLEC15Q6ZMC9 328 aa17.13■□□□□ 0.33
SHMT1-202ENST00000352886 BCL6BQ8N143 479 aaPredicted RBP17.13■□□□□ 0.33
SHMT1-202ENST00000352886 ALKBH7Q9BT30 221 aaPredicted RBP17.13■□□□□ 0.33
SHMT1-202ENST00000352886 VAMP8Q9BV40 100 aa17.13■□□□□ 0.33
SHMT1-202ENST00000352886 MED13LQ71F56 2210 aa17.13■□□□□ 0.33
SHMT1-202ENST00000352886 TRAV30A0A087WSZ9 112 aa17.12■□□□□ 0.33
SHMT1-202ENST00000352886 DIRC3C9JPN6 131 aa17.12■□□□□ 0.33
SHMT1-202ENST00000352886 MFAP4P55083 255 aa17.12■□□□□ 0.33
SHMT1-202ENST00000352886 NIT1Q86X76 327 aa17.12■□□□□ 0.33
SHMT1-202ENST00000352886 Q8N976 141 aa17.12■□□□□ 0.33
SHMT1-202ENST00000352886 PRB4P10163 310 aaPredicted RBP17.12■□□□□ 0.33
SHMT1-202ENST00000352886 Q8N6K4 173 aa17.12■□□□□ 0.33
SHMT1-202ENST00000352886 GFRA4Q9GZZ7 299 aa17.12■□□□□ 0.33
SHMT1-202ENST00000352886 OOSP1A8MZH6 123 aa17.11■□□□□ 0.33
SHMT1-202ENST00000352886 NPIPB6E9PJ23 425 aa17.11■□□□□ 0.33
SHMT1-202ENST00000352886 MRPS12O15235 138 aaKnown RBP17.11■□□□□ 0.33
SHMT1-202ENST00000352886 KLF5Q13887 457 aaPredicted RBP17.11■□□□□ 0.33
SHMT1-202ENST00000352886 Q56UQ5 140 aa17.11■□□□□ 0.33
SHMT1-202ENST00000352886 MINOS1Q5TGZ0 78 aa17.11■□□□□ 0.33
SHMT1-202ENST00000352886 TTC9CQ8N5M4 171 aa17.11■□□□□ 0.33
SHMT1-202ENST00000352886 GOLT1BQ9Y3E0 138 aa17.11■□□□□ 0.33
SHMT1-202ENST00000352886 MINOS1-NBL1R4GNA1 71 aa17.11■□□□□ 0.33
SHMT1-202ENST00000352886 F8W735 103 aaPredicted RBP17.11■□□□□ 0.33
SHMT1-202ENST00000352886 TMEM11P17152 192 aa17.11■□□□□ 0.33
SHMT1-202ENST00000352886 RBPMS2Q6ZRY4 209 aaKnown RBP17.11■□□□□ 0.33
SHMT1-202ENST00000352886 C20orf144Q9BQM9 153 aa17.11■□□□□ 0.33
SHMT1-202ENST00000352886 TMEM208Q9BTX3 173 aa17.11■□□□□ 0.33
SHMT1-202ENST00000352886 DLEU1O43261 78 aa17.1■□□□□ 0.33
SHMT1-202ENST00000352886 PCP4P48539 62 aa17.1■□□□□ 0.33
SHMT1-202ENST00000352886 ZNF414Q96IQ9 312 aa17.1■□□□□ 0.33
SHMT1-202ENST00000352886 UBTD1Q9HAC8 227 aa17.1■□□□□ 0.33
SHMT1-202ENST00000352886 SOX21Q9Y651 276 aaPredicted RBP17.1■□□□□ 0.33
SHMT1-202ENST00000352886 SVEP1Q4LDE5 3571 aa17.1■□□□□ 0.33
SHMT1-202ENST00000352886 LYPD1Q8N2G4 141 aa17.1■□□□□ 0.33
SHMT1-202ENST00000352886 TMEM75Q8N9X5 138 aa17.1■□□□□ 0.33
SHMT1-202ENST00000352886 ASCL2Q99929 193 aa17.1■□□□□ 0.33
SHMT1-202ENST00000352886 SIRPDQ9H106 197 aa17.1■□□□□ 0.33
SHMT1-202ENST00000352886 C21orf62Q9NYP8 219 aa17.1■□□□□ 0.33
SHMT1-202ENST00000352886 IGHV3-23P01764 117 aa17.09■□□□□ 0.33
SHMT1-202ENST00000352886 EBI3Q14213 229 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms