RNA–Protein interactions for RNA: ENST00000337620.8

CBX3-201, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 2,128 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-201ENST00000337620 KHDC1LQ5JSQ8 128 aa11.29□□□□□ -0.6
CBX3-201ENST00000337620 UNQ9165/PRO28630Q6UXU0 137 aa11.29□□□□□ -0.6
CBX3-201ENST00000337620 METTL26Q96S19 204 aa11.29□□□□□ -0.6
CBX3-201ENST00000337620 C16orf95Q9H693 158 aa11.29□□□□□ -0.6
CBX3-201ENST00000337620 TMEM14CQ9P0S9 112 aa11.29□□□□□ -0.6
CBX3-201ENST00000337620 IGHV3OR16-13A0A075B7E8 117 aa11.29□□□□□ -0.6
CBX3-201ENST00000337620 IGHV3-49A0A0A0MS15 119 aa11.29□□□□□ -0.6
CBX3-201ENST00000337620 IGHV3-74A0A0B4J1X5 117 aa11.29□□□□□ -0.6
CBX3-201ENST00000337620 IGHV3-66A0A0C4DH42 116 aa11.29□□□□□ -0.6
CBX3-201ENST00000337620 LGALS1P09382 135 aaKnown RBP11.29□□□□□ -0.6
CBX3-201ENST00000337620 C10orf91Q5T1B1 145 aa11.29□□□□□ -0.6
CBX3-201ENST00000337620 OR8I2Q8N0Y5 310 aa11.29□□□□□ -0.6
CBX3-201ENST00000337620 TXNDC17Q9BRA2 123 aa11.29□□□□□ -0.6
CBX3-201ENST00000337620 A0A1W2PRE2 83 aa11.28□□□□□ -0.6
CBX3-201ENST00000337620 HAX1O00165 279 aa11.28□□□□□ -0.6
CBX3-201ENST00000337620 PDE6DO43924 150 aa11.28□□□□□ -0.6
CBX3-201ENST00000337620 RANP62826 216 aaKnown RBP11.28□□□□□ -0.6
CBX3-201ENST00000337620 SUMO1P63165 101 aaKnown RBP11.28□□□□□ -0.6
CBX3-201ENST00000337620 GUCA2BQ16661 112 aa11.28□□□□□ -0.6
CBX3-201ENST00000337620 TCTEX1D4Q5JR98 221 aa11.28□□□□□ -0.6
CBX3-201ENST00000337620 OR4F17Q8NGA8 305 aa11.28□□□□□ -0.6
CBX3-201ENST00000337620 CARHSP1Q9Y2V2 147 aaKnown RBP11.28□□□□□ -0.6
CBX3-201ENST00000337620 ARL2-SNX15V9GYD0 113 aa11.28□□□□□ -0.6
CBX3-201ENST00000337620 TMEM250H0YL14 139 aa11.27□□□□□ -0.6
CBX3-201ENST00000337620 H3BQ15 152 aa11.27□□□□□ -0.6
CBX3-201ENST00000337620 APOHP02749 345 aaPredicted RBP11.27□□□□□ -0.6
CBX3-201ENST00000337620 HIST1H1EP10412 219 aaKnown RBP11.27□□□□□ -0.6
CBX3-201ENST00000337620 RPEL1Q2QD12 228 aa11.27□□□□□ -0.6
CBX3-201ENST00000337620 HIST2H2BDQ6DRA6 164 aa11.27□□□□□ -0.6
CBX3-201ENST00000337620 C18orf65Q6ZTR6 163 aa11.27□□□□□ -0.6
CBX3-201ENST00000337620 C11orf44Q8N8P7 122 aa11.27□□□□□ -0.6
CBX3-201ENST00000337620 RPUSD4Q96CM3 377 aaKnown RBP11.27□□□□□ -0.6
CBX3-201ENST00000337620 ZNF586Q9NXT0 402 aa11.27□□□□□ -0.6
CBX3-201ENST00000337620 RNF24Q9Y225 148 aa11.27□□□□□ -0.6
CBX3-201ENST00000337620 GGTLC3B5MD39 225 aa11.27□□□□□ -0.61
CBX3-201ENST00000337620 ZNF674Q2M3X9 581 aa11.27□□□□□ -0.61
CBX3-201ENST00000337620 FAM106AQ4KMX7 169 aa11.27□□□□□ -0.61
CBX3-201ENST00000337620 FAM90A2PQ658T7 463 aa11.27□□□□□ -0.61
CBX3-201ENST00000337620 F6UZH7 168 aa11.26□□□□□ -0.61
CBX3-201ENST00000337620 MRPS12O15235 138 aaKnown RBP11.26□□□□□ -0.61
CBX3-201ENST00000337620 BUB3O43684 328 aa11.26□□□□□ -0.61
CBX3-201ENST00000337620 RPL7P18124 248 aaKnown RBP11.26□□□□□ -0.61
CBX3-201ENST00000337620 CRYBB3P26998 211 aa11.26□□□□□ -0.61
CBX3-201ENST00000337620 CDX1P47902 265 aaPredicted RBP11.26□□□□□ -0.61
CBX3-201ENST00000337620 C17orf77Q96MU5 243 aa11.26□□□□□ -0.61
CBX3-201ENST00000337620 IGHV4OR15-8A0A075B7B6 117 aa11.26□□□□□ -0.61
CBX3-201ENST00000337620 A0A087WW49 117 aa11.26□□□□□ -0.61
CBX3-201ENST00000337620 SCO2A0A1W2PP80 73 aa11.26□□□□□ -0.61
CBX3-201ENST00000337620 NDUFA7O95182 113 aa11.26□□□□□ -0.61
CBX3-201ENST00000337620 IGLC2P0DOY2 106 aa11.26□□□□□ -0.61
CBX3-201ENST00000337620 CCDC28AQ8IWP9 274 aa11.26□□□□□ -0.61
CBX3-201ENST00000337620 SVBPQ8N300 66 aa11.26□□□□□ -0.61
CBX3-201ENST00000337620 TMEM190Q8WZ59 177 aa11.26□□□□□ -0.61
CBX3-201ENST00000337620 SETD2Q9BYW2 2564 aaPredicted RBP11.25□□□□□ -0.61
CBX3-201ENST00000337620 NDUFB4O95168 129 aa11.25□□□□□ -0.61
CBX3-201ENST00000337620 GPHB5Q86YW7 130 aa11.25□□□□□ -0.61
CBX3-201ENST00000337620 WIPF2Q8TF74 440 aaPredicted RBP11.25□□□□□ -0.61
CBX3-201ENST00000337620 NKX6-2Q9C056 277 aaPredicted RBP11.25□□□□□ -0.61
CBX3-201ENST00000337620 RNF114Q9Y508 228 aa11.25□□□□□ -0.61
CBX3-201ENST00000337620 TRBV19A0A075B6N1 114 aa11.24□□□□□ -0.61
CBX3-201ENST00000337620 PGPA6NDG6 321 aa11.24□□□□□ -0.61
CBX3-201ENST00000337620 ZNF727A8MUV8 499 aa11.24□□□□□ -0.61
CBX3-201ENST00000337620 CD28P10747 220 aa11.24□□□□□ -0.61
CBX3-201ENST00000337620 DEFB136Q30KP8 78 aa11.24□□□□□ -0.61
CBX3-201ENST00000337620 TM4SF20Q53R12 229 aa11.24□□□□□ -0.61
CBX3-201ENST00000337620 SMIM7Q9BQ49 75 aa11.24□□□□□ -0.61
CBX3-201ENST00000337620 ELOVL1Q9BW60 279 aa11.24□□□□□ -0.61
CBX3-201ENST00000337620 PARLQ9H300 379 aa11.24□□□□□ -0.61
CBX3-201ENST00000337620 U3KQE9 123 aa11.24□□□□□ -0.61
CBX3-201ENST00000337620 NIPBLQ6KC79 2804 aaeCLIP11.24□□□□□ -0.61
CBX3-201ENST00000337620 NDUFS6O75380 124 aaKnown RBP11.24□□□□□ -0.61
CBX3-201ENST00000337620 KLHL30-AS1Q8NEE0 82 aa11.24□□□□□ -0.61
CBX3-201ENST00000337620 C4orf3Q8WVX3 66 aa11.24□□□□□ -0.61
CBX3-201ENST00000337620 NIPSNAP3BQ9BS92 247 aa11.24□□□□□ -0.61
CBX3-201ENST00000337620 Q9H3A6 140 aa11.24□□□□□ -0.61
CBX3-201ENST00000337620 SMAD5-AS1Q9Y6J3 95 aa11.24□□□□□ -0.61
CBX3-201ENST00000337620 ATF4P18848 351 aaPredicted RBP11.23□□□□□ -0.61
CBX3-201ENST00000337620 C1orf194Q5T5A4 169 aa11.23□□□□□ -0.61
CBX3-201ENST00000337620 ATRAIDQ6UW56 229 aa11.23□□□□□ -0.61
CBX3-201ENST00000337620 DERL1Q9BUN8 251 aa11.23□□□□□ -0.61
CBX3-201ENST00000337620 DAZ1Q9NQZ3 744 aaKnown RBP11.23□□□□□ -0.61
CBX3-201ENST00000337620 ZNF785A8K8V0 405 aa11.23□□□□□ -0.61
CBX3-201ENST00000337620 SCO1O75880 301 aa11.23□□□□□ -0.61
CBX3-201ENST00000337620 SLC25A5P05141 298 aaKnown RBP11.23□□□□□ -0.61
CBX3-201ENST00000337620 HOXD3P31249 432 aaPredicted RBP11.23□□□□□ -0.61
CBX3-201ENST00000337620 EXOC3-AS1Q8N2X6 119 aa11.23□□□□□ -0.61
CBX3-201ENST00000337620 OR11H1Q8NG94 326 aa11.23□□□□□ -0.61
CBX3-201ENST00000337620 GPR82Q96P67 336 aa11.23□□□□□ -0.61
CBX3-201ENST00000337620 A0A1W2PRX2 142 aa11.22□□□□□ -0.61
CBX3-201ENST00000337620 M0R036 132 aa11.22□□□□□ -0.61
CBX3-201ENST00000337620 SLC17A3O00476 420 aa11.22□□□□□ -0.61
CBX3-201ENST00000337620 SNAPINO95295 136 aa11.22□□□□□ -0.61
CBX3-201ENST00000337620 MYCNOSP40205 109 aa11.22□□□□□ -0.61
CBX3-201ENST00000337620 GALR1P47211 349 aa11.22□□□□□ -0.61
CBX3-201ENST00000337620 SYNJ2BPP57105 145 aa11.22□□□□□ -0.61
CBX3-201ENST00000337620 DPF1Q92782 380 aa11.22□□□□□ -0.61
CBX3-201ENST00000337620 DUX3Q96PT4 197 aa11.22□□□□□ -0.61
CBX3-201ENST00000337620 UFC1Q9Y3C8 167 aa11.22□□□□□ -0.61
CBX3-201ENST00000337620 A0A1W2PS18 150 aa11.21□□□□□ -0.61
CBX3-201ENST00000337620 GNG5P63218 68 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms