RNA–Protein interactions for RNA: YOR054C

VHS3, Transcript of Negative regulatory subunit of protein phosphatase 1 Ppz1p, yeast

Gene VHS3, Length 2,025 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VHS3	YOR054C	MRF1	P30775	413 aa	Predicted RBP	4.21	□□□□□ -1.74
VHS3	YOR054C	HIR1	P32479	840 aa		4.21	□□□□□ -1.74
VHS3	YOR054C	MAC1	P35192	417 aa		4.21	□□□□□ -1.74
VHS3	YOR054C	GLG1	P36143	616 aa		4.21	□□□□□ -1.74
VHS3	YOR054C	YBR138C	P38277	524 aa		4.21	□□□□□ -1.74
VHS3	YOR054C	SDH8	P38345	138 aa		4.21	□□□□□ -1.74
VHS3	YOR054C	TRM5	P38793	499 aa		4.21	□□□□□ -1.74
VHS3	YOR054C	CCT6	P39079	546 aa		4.21	□□□□□ -1.74
VHS3	YOR054C	GDH3	P39708	457 aa		4.21	□□□□□ -1.74
VHS3	YOR054C	SER3	P40054	469 aa		4.21	□□□□□ -1.74
VHS3	YOR054C	LYS14	P40971	790 aa		4.21	□□□□□ -1.74
VHS3	YOR054C	TRF5	P48561	642 aa	Known RBP	4.21	□□□□□ -1.74
VHS3	YOR054C	OCA1	P50946	238 aa	Predicted RBP	4.21	□□□□□ -1.74
VHS3	YOR054C	MIG2	P53035	382 aa		4.21	□□□□□ -1.74
VHS3	YOR054C	TAD1	P53065	400 aa		4.21	□□□□□ -1.74
VHS3	YOR054C	RIM8	P53179	542 aa		4.21	□□□□□ -1.74
VHS3	YOR054C	PUS6	P53294	404 aa		4.21	□□□□□ -1.74
VHS3	YOR054C	CNM67	P53865	581 aa	Known RBP	4.21	□□□□□ -1.74
VHS3	YOR054C	ORC3	P54790	616 aa		4.21	□□□□□ -1.74
VHS3	YOR054C	PRO2	P54885	456 aa	Known RBP	4.21	□□□□□ -1.74
VHS3	YOR054C	CEG1	Q01159	459 aa	Predicted RBP	4.21	□□□□□ -1.74
VHS3	YOR054C	MDM1	Q01846	1127 aa		4.21	□□□□□ -1.74
VHS3	YOR054C	PNG1	Q02890	363 aa		4.21	□□□□□ -1.74
VHS3	YOR054C	EEB1	Q02891	456 aa		4.21	□□□□□ -1.74
VHS3	YOR054C	ISU1	Q03020	165 aa		4.21	□□□□□ -1.74
VHS3	YOR054C	EMI2	Q04409	500 aa	Known RBP	4.21	□□□□□ -1.74
VHS3	YOR054C	ENT2	Q05785	613 aa		4.21	□□□□□ -1.74
VHS3	YOR054C	DXO1	Q06349	442 aa		4.21	□□□□□ -1.74
VHS3	YOR054C	MLH2	Q07980	695 aa		4.21	□□□□□ -1.74
VHS3	YOR054C	INP54	Q08227	384 aa	Known RBP	4.21	□□□□□ -1.74
VHS3	YOR054C	SGT1	Q08446	395 aa		4.21	□□□□□ -1.74
VHS3	YOR054C	CLP1	Q08685	445 aa	Predicted RBP	4.21	□□□□□ -1.74
VHS3	YOR054C	GSC2	P40989	1895 aa		4.2	□□□□□ -1.74
VHS3	YOR054C	PMD1	P32634	1753 aa		4.2	□□□□□ -1.74
VHS3	YOR054C	ILV2	P07342	687 aa	Known RBP	4.2	□□□□□ -1.74
VHS3	YOR054C	RDS2	P19541	446 aa	Known RBP	4.2	□□□□□ -1.74
VHS3	YOR054C	CLN2	P20438	545 aa		4.2	□□□□□ -1.74
VHS3	YOR054C	MEF1	P25039	761 aa		4.2	□□□□□ -1.74
VHS3	YOR054C	SWI4	P25302	1093 aa	Known RBP	4.2	□□□□□ -1.74
VHS3	YOR054C	GBP2	P25555	427 aa	Known RBP RIP-Chip data	4.2	□□□□□ -1.74	RIP-Chip
VHS3	YOR054C	VPS51	P36116	164 aa		4.2	□□□□□ -1.74
VHS3	YOR054C	NTR2	P36118	322 aa	Predicted RBP	4.2	□□□□□ -1.74
VHS3	YOR054C	UBX7	P38349	436 aa		4.2	□□□□□ -1.74
VHS3	YOR054C	SSP120	P39931	234 aa	Known RBP	4.2	□□□□□ -1.74
VHS3	YOR054C	RPT2	P40327	437 aa	Known RBP	4.2	□□□□□ -1.74
VHS3	YOR054C	UTP18	P40362	594 aa	Predicted RBP	4.2	□□□□□ -1.74
VHS3	YOR054C	MAM33	P40513	266 aa		4.2	□□□□□ -1.74
VHS3	YOR054C	HXT10	P43581	546 aa		4.2	□□□□□ -1.74
VHS3	YOR054C	ALT1	P52893	592 aa		4.2	□□□□□ -1.74
VHS3	YOR054C	ZRG17	P53735	605 aa		4.2	□□□□□ -1.74
VHS3	YOR054C	UTP6	Q02354	440 aa	Known RBP	4.2	□□□□□ -1.74
VHS3	YOR054C	TBF1	Q02457	562 aa		4.2	□□□□□ -1.74
VHS3	YOR054C	ERO1	Q03103	563 aa		4.2	□□□□□ -1.74
VHS3	YOR054C	YDR476C	Q03362	224 aa		4.2	□□□□□ -1.74
VHS3	YOR054C	FMN1	Q03778	218 aa		4.2	□□□□□ -1.74
VHS3	YOR054C	URC2	Q04411	772 aa		4.2	□□□□□ -1.74
VHS3	YOR054C	SVF1	Q05515	481 aa		4.2	□□□□□ -1.74
VHS3	YOR054C	SMD2	Q06217	110 aa	Known RBP	4.2	□□□□□ -1.74
VHS3	YOR054C	VPS36	Q06696	566 aa		4.2	□□□□□ -1.74
VHS3	YOR054C	DIB1	Q06819	143 aa	Predicted RBP	4.2	□□□□□ -1.74
VHS3	YOR054C	ACM1	Q08981	209 aa		4.2	□□□□□ -1.74
VHS3	YOR054C	YIL002W-A	Q3E7Z5	69 aa		4.2	□□□□□ -1.74
VHS3	YOR054C	RPN13	O13563	156 aa		4.19	□□□□□ -1.74
VHS3	YOR054C	HIS4	P00815	799 aa	Known RBP	4.19	□□□□□ -1.74
VHS3	YOR054C	MF(ALPHA)1	P01149	165 aa		4.19	□□□□□ -1.74
VHS3	YOR054C	SPS1	P08458	490 aa		4.19	□□□□□ -1.74
VHS3	YOR054C	TUB1	P09733	447 aa	Known RBP	4.19	□□□□□ -1.74
VHS3	YOR054C	GAL2	P13181	574 aa		4.19	□□□□□ -1.74
VHS3	YOR054C	STF2	P16965	84 aa		4.19	□□□□□ -1.74
VHS3	YOR054C	DAP2	P18962	818 aa		4.19	□□□□□ -1.74
VHS3	YOR054C	CRM1	P30822	1084 aa	Known RBP	4.19	□□□□□ -1.74
VHS3	YOR054C	EUG1	P32474	517 aa		4.19	□□□□□ -1.74
VHS3	YOR054C	SAS3	P34218	831 aa		4.19	□□□□□ -1.74
VHS3	YOR054C	CLG1	P35190	452 aa		4.19	□□□□□ -1.74
VHS3	YOR054C	YKL050C	P35736	922 aa		4.19	□□□□□ -1.74
VHS3	YOR054C	APL2	P36000	726 aa	Predicted RBP	4.19	□□□□□ -1.74
VHS3	YOR054C	EAP1	P36041	632 aa	Known RBP	4.19	□□□□□ -1.74
VHS3	YOR054C	PDX3	P38075	228 aa	Known RBP	4.19	□□□□□ -1.74
VHS3	YOR054C	KAP104	P38217	918 aa	Known RBP	4.19	□□□□□ -1.74
VHS3	YOR054C	TMN3	P40071	706 aa		4.19	□□□□□ -1.74
VHS3	YOR054C	YER186C	P40101	306 aa		4.19	□□□□□ -1.74
VHS3	YOR054C	CST6	P40535	587 aa		4.19	□□□□□ -1.74
VHS3	YOR054C	FMP32	P43557	207 aa		4.19	□□□□□ -1.74
VHS3	YOR054C	YFH7	P43591	353 aa		4.19	□□□□□ -1.74
VHS3	YOR054C	IRC5	P43610	853 aa		4.19	□□□□□ -1.74
VHS3	YOR054C	EMC2	P47133	292 aa	Known RBP	4.19	□□□□□ -1.74
VHS3	YOR054C	FYV6	P53913	173 aa		4.19	□□□□□ -1.74
VHS3	YOR054C	SED5	Q01590	340 aa		4.19	□□□□□ -1.74
VHS3	YOR054C	TDA9	Q04545	1251 aa		4.19	□□□□□ -1.74
VHS3	YOR054C	RRN11	Q04712	507 aa		4.19	□□□□□ -1.74
VHS3	YOR054C	TDA5	Q06417	326 aa	Known RBP	4.19	□□□□□ -1.74
VHS3	YOR054C	PUS7	Q08647	676 aa	Known RBP	4.19	□□□□□ -1.74
VHS3	YOR054C	YOR289W	Q12012	251 aa	Predicted RBP	4.19	□□□□□ -1.74
VHS3	YOR054C	VPS54	Q12071	889 aa		4.19	□□□□□ -1.74
VHS3	YOR054C	BMT6	Q12291	365 aa		4.19	□□□□□ -1.74
VHS3	YOR054C	HSP42	Q12329	375 aa		4.19	□□□□□ -1.74
VHS3	YOR054C	GRX6	Q12438	231 aa		4.19	□□□□□ -1.74
VHS3	YOR054C	HMG2	P12684	1045 aa		4.19	□□□□□ -1.74
VHS3	YOR054C	ICL1	P28240	557 aa	Predicted RBP	4.19	□□□□□ -1.74
VHS3	YOR054C	MEI4	P29467	408 aa		4.19	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 15.5 ms