RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 PDZD3Q86UT5 571 aa9.4□□□□□ -0.9
VPS29-212ENST00000621131 FBXL6Q8N531 539 aa9.4□□□□□ -0.9
VPS29-212ENST00000621131 GATA6Q92908 595 aa9.4□□□□□ -0.9
VPS29-212ENST00000621131 SETDB2Q96T68 719 aa9.4□□□□□ -0.9
VPS29-212ENST00000621131 ZC3H12CQ9C0D7 883 aaKnown RBP9.4□□□□□ -0.9
VPS29-212ENST00000621131 WWC3Q9ULE0 1092 aa9.4□□□□□ -0.9
VPS29-212ENST00000621131 GSTP1P09211 210 aaKnown RBP9.39□□□□□ -0.91
VPS29-212ENST00000621131 HOXA10P31260 410 aaPredicted RBP9.39□□□□□ -0.91
VPS29-212ENST00000621131 ASPAP45381 313 aa9.39□□□□□ -0.91
VPS29-212ENST00000621131 DTX1Q86Y01 620 aa9.39□□□□□ -0.91
VPS29-212ENST00000621131 C3orf58Q8NDZ4 430 aa9.39□□□□□ -0.91
VPS29-212ENST00000621131 GIMAP7Q8NHV1 300 aa9.39□□□□□ -0.91
VPS29-212ENST00000621131 STK35Q8TDR2 534 aa9.39□□□□□ -0.91
VPS29-212ENST00000621131 FBF1Q8TES7 1133 aa9.39□□□□□ -0.91
VPS29-212ENST00000621131 SEMA6CQ9H3T2 930 aa9.39□□□□□ -0.91
VPS29-212ENST00000621131 ATG3Q9NT62 314 aa9.39□□□□□ -0.91
VPS29-212ENST00000621131 PIM2Q9P1W9 311 aa9.39□□□□□ -0.91
VPS29-212ENST00000621131 GPN3Q9UHW5 284 aaPredicted RBP9.39□□□□□ -0.91
VPS29-212ENST00000621131 AP4E1Q9UPM8 1137 aa9.39□□□□□ -0.91
VPS29-212ENST00000621131 AKAP2Q9Y2D5 859 aa9.39□□□□□ -0.91
VPS29-212ENST00000621131 ADAMTS4O75173 837 aa9.38□□□□□ -0.91
VPS29-212ENST00000621131 PPP2R3AQ06190 1150 aa9.38□□□□□ -0.91
VPS29-212ENST00000621131 MAP7Q14244 749 aa9.38□□□□□ -0.91
VPS29-212ENST00000621131 SEZ6L2Q6UXD5 910 aa9.38□□□□□ -0.91
VPS29-212ENST00000621131 ZAR1Q86SH2 424 aa9.38□□□□□ -0.91
VPS29-212ENST00000621131 OSBPL7Q9BZF2 842 aa9.38□□□□□ -0.91
VPS29-212ENST00000621131 KRT82Q9NSB4 513 aa9.38□□□□□ -0.91
VPS29-212ENST00000621131 TMPRSS2O15393 492 aa9.37□□□□□ -0.91
VPS29-212ENST00000621131 RAB6AP20340 208 aa9.37□□□□□ -0.91
VPS29-212ENST00000621131 KIF4BQ2VIQ3 1234 aa9.37□□□□□ -0.91
VPS29-212ENST00000621131 TBC1D32Q96NH3 1257 aa9.37□□□□□ -0.91
VPS29-212ENST00000621131 CRIM1Q9NZV1 1036 aa9.37□□□□□ -0.91
VPS29-212ENST00000621131 PCDHGC5Q9Y5F6 944 aa9.37□□□□□ -0.91
VPS29-212ENST00000621131 PATL2C9JE40 543 aaKnown RBP9.36□□□□□ -0.91
VPS29-212ENST00000621131 SLFN14P0C7P3 912 aa9.36□□□□□ -0.91
VPS29-212ENST00000621131 ARNTP27540 789 aa9.36□□□□□ -0.91
VPS29-212ENST00000621131 ALG1LQ6GMV1 187 aa9.36□□□□□ -0.91
VPS29-212ENST00000621131 OSBPL1AQ9BXW6 950 aa9.36□□□□□ -0.91
VPS29-212ENST00000621131 SRCIN1Q9C0H9 1055 aa9.36□□□□□ -0.91
VPS29-212ENST00000621131 C1GALT1Q9NS00 363 aa9.36□□□□□ -0.91
VPS29-212ENST00000621131 LEMD3Q9Y2U8 911 aa9.36□□□□□ -0.91
VPS29-212ENST00000621131 CPSF6Q16630 551 aaKnown RBP eCLIP9.35□□□□□ -0.91
VPS29-212ENST00000621131 SULF2Q8IWU5 870 aa9.35□□□□□ -0.91
VPS29-212ENST00000621131 NECAB3Q96P71 396 aaPredicted RBP9.35□□□□□ -0.91
VPS29-212ENST00000621131 KRTAP4-8Q9BYQ9 185 aa9.35□□□□□ -0.91
VPS29-212ENST00000621131 FAM170BA6NMN3 283 aa9.34□□□□□ -0.91
VPS29-212ENST00000621131 GIPC1O14908 333 aa9.34□□□□□ -0.91
VPS29-212ENST00000621131 DYNC1LI2O43237 492 aaPredicted RBP9.34□□□□□ -0.91
VPS29-212ENST00000621131 FOSL1P15407 271 aa9.34□□□□□ -0.91
VPS29-212ENST00000621131 NME2P22392 152 aa9.34□□□□□ -0.91
VPS29-212ENST00000621131 GSTT1P30711 240 aa9.34□□□□□ -0.91
VPS29-212ENST00000621131 ID3Q02535 119 aa9.34□□□□□ -0.91
VPS29-212ENST00000621131 FANCD2OSQ96PS1 177 aa9.34□□□□□ -0.91
VPS29-212ENST00000621131 METTL22Q9BUU2 404 aaPredicted RBP9.34□□□□□ -0.91
VPS29-212ENST00000621131 DISC1Q9NRI5 854 aa9.34□□□□□ -0.91
VPS29-212ENST00000621131 P4HBP07237 508 aaKnown RBP9.33□□□□□ -0.92
VPS29-212ENST00000621131 ZNF252P-AS1Q0IIN9 211 aa9.33□□□□□ -0.92
VPS29-212ENST00000621131 KCNB2Q92953 911 aa9.33□□□□□ -0.92
VPS29-212ENST00000621131 CACNA2D2Q9NY47 1150 aa9.33□□□□□ -0.92
VPS29-212ENST00000621131 BMP6P22004 513 aa9.32□□□□□ -0.92
VPS29-212ENST00000621131 MSMPQ1L6U9 139 aa9.32□□□□□ -0.92
VPS29-212ENST00000621131 ANKRD24Q8TF21 1146 aa9.32□□□□□ -0.92
VPS29-212ENST00000621131 PSMG3-AS1Q96PY0 264 aa9.32□□□□□ -0.92
VPS29-212ENST00000621131 ATXN3LQ9H3M9 355 aa9.32□□□□□ -0.92
VPS29-212ENST00000621131 OAS3Q9Y6K5 1087 aaKnown RBP9.32□□□□□ -0.92
VPS29-212ENST00000621131 GP2P55259 537 aaKnown RBP9.31□□□□□ -0.92
VPS29-212ENST00000621131 TPTE2Q6XPS3 522 aa9.31□□□□□ -0.92
VPS29-212ENST00000621131 EMILIN2Q9BXX0 1053 aa9.31□□□□□ -0.92
VPS29-212ENST00000621131 LGR6Q9HBX8 967 aa9.31□□□□□ -0.92
VPS29-212ENST00000621131 DAGLAQ9Y4D2 1042 aa9.31□□□□□ -0.92
VPS29-212ENST00000621131 ENC1O14682 589 aa9.3□□□□□ -0.92
VPS29-212ENST00000621131 CYP26A1O43174 497 aa9.3□□□□□ -0.92
VPS29-212ENST00000621131 WNT11O96014 354 aa9.3□□□□□ -0.92
VPS29-212ENST00000621131 ATP2B2Q01814 1243 aa9.3□□□□□ -0.92
VPS29-212ENST00000621131 OGFOD3Q6PK18 319 aa9.3□□□□□ -0.92
VPS29-212ENST00000621131 MPRIPQ6WCQ1 1025 aa9.3□□□□□ -0.92
VPS29-212ENST00000621131 CEP44Q9C0F1 390 aa9.3□□□□□ -0.92
VPS29-212ENST00000621131 PPM1HQ9ULR3 514 aa9.3□□□□□ -0.92
VPS29-212ENST00000621131 PAGE1O75459 146 aa9.29□□□□□ -0.92
VPS29-212ENST00000621131 LDHBP07195 334 aaKnown RBP9.29□□□□□ -0.92
VPS29-212ENST00000621131 ZC3H12AQ5D1E8 599 aaKnown RBP9.29□□□□□ -0.92
VPS29-212ENST00000621131 DUSP27Q5VZP5 1158 aa9.29□□□□□ -0.92
VPS29-212ENST00000621131 MAP1SQ66K74 1059 aaPredicted RBP9.29□□□□□ -0.92
VPS29-212ENST00000621131 ZNF765Q7L2R6 523 aa9.29□□□□□ -0.92
VPS29-212ENST00000621131 GRIN3AQ8TCU5 1115 aa9.29□□□□□ -0.92
VPS29-212ENST00000621131 GPBAR1Q8TDU6 330 aa9.29□□□□□ -0.92
VPS29-212ENST00000621131 C12orf49Q9H741 205 aa9.29□□□□□ -0.92
VPS29-212ENST00000621131 SPG7Q9UQ90 795 aa9.29□□□□□ -0.92
VPS29-212ENST00000621131 HNRNPUQ00839 825 aaKnown RBP eCLIP9.28□□□□□ -0.92
VPS29-212ENST00000621131 CYP27A1Q02318 531 aa9.28□□□□□ -0.92
VPS29-212ENST00000621131 TTLL4Q14679 1199 aa9.28□□□□□ -0.92
VPS29-212ENST00000621131 SMYD4Q8IYR2 804 aaPredicted RBP9.28□□□□□ -0.92
VPS29-212ENST00000621131 FBXO24O75426 580 aa9.27□□□□□ -0.93
VPS29-212ENST00000621131 PRNPP04156 253 aa9.27□□□□□ -0.93
VPS29-212ENST00000621131 AEBP1Q8IUX7 1158 aa9.27□□□□□ -0.93
VPS29-212ENST00000621131 FRMD6Q96NE9 622 aa9.27□□□□□ -0.93
VPS29-212ENST00000621131 PIDD1Q9HB75 910 aa9.27□□□□□ -0.93
VPS29-212ENST00000621131 CBX8Q9HC52 389 aa9.27□□□□□ -0.93
VPS29-212ENST00000621131 FAM8A1Q9UBU6 413 aa9.27□□□□□ -0.93
VPS29-212ENST00000621131 NEFMP07197 916 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms