RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 CDC42EP5Q6NZY7 148 aa19.78■□□□□ 0.76
TRIM28-213ENST00000598355 PAXIP1Q6ZW49 1069 aaPredicted RBP19.78■□□□□ 0.76
TRIM28-213ENST00000598355 ERICH6Q7L0X2 663 aa19.78■□□□□ 0.76
TRIM28-213ENST00000598355 DZIP1Q86YF9 867 aaKnown RBP19.78■□□□□ 0.76
TRIM28-213ENST00000598355 CDAN1Q8IWY9 1227 aa19.78■□□□□ 0.76
TRIM28-213ENST00000598355 CLASRPQ8N2M8 674 aaKnown RBP19.78■□□□□ 0.76
TRIM28-213ENST00000598355 CCDC102AQ96A19 550 aa19.78■□□□□ 0.76
TRIM28-213ENST00000598355 NSUN4Q96CB9 384 aaKnown RBP19.78■□□□□ 0.76
TRIM28-213ENST00000598355 UNCXA6NJT0 531 aa19.77■□□□□ 0.76
TRIM28-213ENST00000598355 AOC2O75106 756 aa19.77■□□□□ 0.76
TRIM28-213ENST00000598355 CYP2E1P05181 493 aaPredicted RBP19.77■□□□□ 0.76
TRIM28-213ENST00000598355 CACNB3P54284 484 aa19.77■□□□□ 0.76
TRIM28-213ENST00000598355 SUPT20HL1Q3ZLR7 823 aa19.77■□□□□ 0.76
TRIM28-213ENST00000598355 TBC1D9Q6ZT07 1266 aa19.77■□□□□ 0.76
TRIM28-213ENST00000598355 SLF2Q8IX21 1173 aa19.77■□□□□ 0.76
TRIM28-213ENST00000598355 TMEM39BQ9GZU3 492 aa19.77■□□□□ 0.76
TRIM28-213ENST00000598355 TMOD2Q9NZR1 351 aa19.77■□□□□ 0.76
TRIM28-213ENST00000598355 PCDHB15Q9Y5E8 787 aa19.77■□□□□ 0.76
TRIM28-213ENST00000598355 ZNF157P51786 506 aaPredicted RBP19.76■□□□□ 0.75
TRIM28-213ENST00000598355 MAP2K1Q02750 393 aaPredicted RBP19.76■□□□□ 0.75
TRIM28-213ENST00000598355 ARMC9Q7Z3E5 817 aa19.76■□□□□ 0.75
TRIM28-213ENST00000598355 CRBNQ96SW2 442 aa19.76■□□□□ 0.75
TRIM28-213ENST00000598355 IDI2Q9BXS1 227 aa19.76■□□□□ 0.75
TRIM28-213ENST00000598355 DCTPP1Q9H773 170 aa19.76■□□□□ 0.75
TRIM28-213ENST00000598355 COL2A1P02458 1487 aaPredicted RBP19.75■□□□□ 0.75
TRIM28-213ENST00000598355 SIPA1L1O43166 1804 aa19.75■□□□□ 0.75
TRIM28-213ENST00000598355 GPR75-ASB3A0A0A6YYF3 556 aa19.75■□□□□ 0.75
TRIM28-213ENST00000598355 UBE2Q2LH0YL09 131 aa19.75■□□□□ 0.75
TRIM28-213ENST00000598355 ZAP70P43403 619 aa19.75■□□□□ 0.75
TRIM28-213ENST00000598355 PPIL4Q8WUA2 492 aaKnown RBP eCLIP19.75■□□□□ 0.75
TRIM28-213ENST00000598355 ZIC5Q96T25 663 aa19.75■□□□□ 0.75
TRIM28-213ENST00000598355 SNRKQ9NRH2 765 aa19.75■□□□□ 0.75
TRIM28-213ENST00000598355 FAM198AQ9UFP1 575 aa19.75■□□□□ 0.75
TRIM28-213ENST00000598355 ATRNL1Q5VV63 1379 aa19.74■□□□□ 0.75
TRIM28-213ENST00000598355 PPP1R12BO60237 982 aaPredicted RBP19.74■□□□□ 0.75
TRIM28-213ENST00000598355 RHBDL3P58872 404 aa19.74■□□□□ 0.75
TRIM28-213ENST00000598355 NFIAQ12857 509 aa19.74■□□□□ 0.75
TRIM28-213ENST00000598355 FAM151AQ8WW52 585 aa19.74■□□□□ 0.75
TRIM28-213ENST00000598355 ANGEL1Q9UNK9 670 aaKnown RBP19.74■□□□□ 0.75
TRIM28-213ENST00000598355 FZD1Q9UP38 647 aa19.74■□□□□ 0.75
TRIM28-213ENST00000598355 DDX60LQ5H9U9 1706 aaKnown RBP19.73■□□□□ 0.75
TRIM28-213ENST00000598355 FOXN1O15353 648 aa19.73■□□□□ 0.75
TRIM28-213ENST00000598355 USP2O75604 605 aaPredicted RBP19.73■□□□□ 0.75
TRIM28-213ENST00000598355 MAP4K4O95819 1239 aaPredicted RBP19.73■□□□□ 0.75
TRIM28-213ENST00000598355 BTDP43251 543 aa19.73■□□□□ 0.75
TRIM28-213ENST00000598355 GSTO1P78417 241 aa19.73■□□□□ 0.75
TRIM28-213ENST00000598355 GRM1Q13255 1194 aa19.73■□□□□ 0.75
TRIM28-213ENST00000598355 TTLL12Q14166 644 aaPredicted RBP19.73■□□□□ 0.75
TRIM28-213ENST00000598355 LRRCC1Q9C099 1032 aa19.73■□□□□ 0.75
TRIM28-213ENST00000598355 PIH1D3Q9NQM4 214 aaKnown RBP19.73■□□□□ 0.75
TRIM28-213ENST00000598355 APBB1O00213 710 aa19.72■□□□□ 0.75
TRIM28-213ENST00000598355 NPM3O75607 178 aaKnown RBP19.72■□□□□ 0.75
TRIM28-213ENST00000598355 WDHD1O75717 1129 aaPredicted RBP19.72■□□□□ 0.75
TRIM28-213ENST00000598355 AAMPQ13685 434 aa19.72■□□□□ 0.75
TRIM28-213ENST00000598355 USP40Q9NVE5 1235 aa19.72■□□□□ 0.75
TRIM28-213ENST00000598355 RAI14Q9P0K7 980 aa19.72■□□□□ 0.75
TRIM28-213ENST00000598355 LRP2BPQ9P2M1 347 aa19.72■□□□□ 0.75
TRIM28-213ENST00000598355 ENTPD3O75355 529 aa19.71■□□□□ 0.75
TRIM28-213ENST00000598355 LDHCP07864 332 aa19.71■□□□□ 0.75
TRIM28-213ENST00000598355 PRKG1Q13976 671 aa19.71■□□□□ 0.75
TRIM28-213ENST00000598355 TMED8Q6PL24 325 aaPredicted RBP19.71■□□□□ 0.75
TRIM28-213ENST00000598355 DDX55Q8NHQ9 600 aaKnown RBP eCLIP19.71■□□□□ 0.753e-21■■□□□ 11.9
TRIM28-213ENST00000598355 IFIT2P09913 472 aaKnown RBP19.7■□□□□ 0.74
TRIM28-213ENST00000598355 IREB2P48200 963 aaKnown RBP19.7■□□□□ 0.74
TRIM28-213ENST00000598355 DDX4Q9NQI0 724 aaKnown RBP19.7■□□□□ 0.74
TRIM28-213ENST00000598355 DOCK1Q14185 1865 aa19.7■□□□□ 0.74
TRIM28-213ENST00000598355 MYH1P12882 1939 aa19.69■□□□□ 0.74
TRIM28-213ENST00000598355 RGS3P49796 1198 aa19.69■□□□□ 0.74
TRIM28-213ENST00000598355 KIF23Q02241 960 aaPredicted RBP19.69■□□□□ 0.74
TRIM28-213ENST00000598355 NAA16Q6N069 864 aaPredicted RBP19.69■□□□□ 0.74
TRIM28-213ENST00000598355 ADGRA1Q86SQ6 560 aa19.69■□□□□ 0.74
TRIM28-213ENST00000598355 ANKRD13AQ8IZ07 590 aa19.69■□□□□ 0.74
TRIM28-213ENST00000598355 HOOK2Q96ED9 719 aa19.69■□□□□ 0.74
TRIM28-213ENST00000598355 CLMNQ96JQ2 1002 aa19.69■□□□□ 0.74
TRIM28-213ENST00000598355 ANTXR1Q9H6X2 564 aa19.69■□□□□ 0.74
TRIM28-213ENST00000598355 NDUFB9Q9Y6M9 179 aa19.69■□□□□ 0.74
TRIM28-213ENST00000598355 PHIPQ8WWQ0 1821 aa19.68■□□□□ 0.74
TRIM28-213ENST00000598355 ATAD5Q96QE3 1844 aa19.68■□□□□ 0.74
TRIM28-213ENST00000598355 CA12O43570 354 aa19.68■□□□□ 0.74
TRIM28-213ENST00000598355 ATP5JP18859 108 aa19.68■□□□□ 0.74
TRIM28-213ENST00000598355 PPP4CP60510 307 aa19.68■□□□□ 0.74
TRIM28-213ENST00000598355 SPRYD7Q5W111 196 aa19.68■□□□□ 0.74
TRIM28-213ENST00000598355 PPP1R3FQ6ZSY5 799 aaPredicted RBP19.68■□□□□ 0.74
TRIM28-213ENST00000598355 REM2Q8IYK8 340 aaPredicted RBP19.68■□□□□ 0.74
TRIM28-213ENST00000598355 AIDAQ96BJ3 306 aa19.68■□□□□ 0.74
TRIM28-213ENST00000598355 PTPRFP10586 1907 aa19.68■□□□□ 0.74
TRIM28-213ENST00000598355 NAV1Q8NEY1 1877 aa19.67■□□□□ 0.74
TRIM28-213ENST00000598355 SMARCA5O60264 1052 aaPredicted RBP19.67■□□□□ 0.74
TRIM28-213ENST00000598355 ZBTB48P10074 688 aaPredicted RBP19.67■□□□□ 0.74
TRIM28-213ENST00000598355 HSPA8P11142 646 aaKnown RBP19.67■□□□□ 0.74
TRIM28-213ENST00000598355 CTCFP49711 727 aaPredicted RBP19.67■□□□□ 0.74
TRIM28-213ENST00000598355 TCP10Q12799 353 aa19.67■□□□□ 0.74
TRIM28-213ENST00000598355 HDAC1Q13547 482 aaPredicted RBP19.67■□□□□ 0.74
TRIM28-213ENST00000598355 SH3BP5LQ7L8J4 393 aa19.67■□□□□ 0.74
TRIM28-213ENST00000598355 ZFPM1Q8IX07 1006 aa19.67■□□□□ 0.74
TRIM28-213ENST00000598355 CSRNP1Q96S65 589 aa19.67■□□□□ 0.74
TRIM28-213ENST00000598355 MAP3K10Q02779 954 aa19.66■□□□□ 0.74
TRIM28-213ENST00000598355 VGLL4Q14135 290 aa19.66■□□□□ 0.74
TRIM28-213ENST00000598355 TTF1Q15361 905 aaPredicted RBP19.66■□□□□ 0.74
TRIM28-213ENST00000598355 DCAF15Q66K64 600 aa19.66■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms