RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 EDC3Q96F86 508 aaKnown RBP12.17□□□□□ -0.46
USP3-216ENST00000559873 VEZTQ9HBM0 779 aa12.17□□□□□ -0.46
USP3-216ENST00000559873 ZNF532Q9HCE3 1301 aa12.16□□□□□ -0.46
USP3-216ENST00000559873 MYH2Q9UKX2 1941 aa12.16□□□□□ -0.46
USP3-216ENST00000559873 GPR75-ASB3A0A0A6YYF3 556 aa12.16□□□□□ -0.46
USP3-216ENST00000559873 HIP1O00291 1037 aa12.16□□□□□ -0.46
USP3-216ENST00000559873 ADD2P35612 726 aa12.16□□□□□ -0.46
USP3-216ENST00000559873 HIRAP54198 1017 aaPredicted RBP12.16□□□□□ -0.46
USP3-216ENST00000559873 FSTL1Q12841 308 aa12.16□□□□□ -0.46
USP3-216ENST00000559873 CDC37L1Q7L3B6 337 aa12.16□□□□□ -0.46
USP3-216ENST00000559873 RILPL2Q969X0 211 aa12.16□□□□□ -0.46
USP3-216ENST00000559873 PRMT6Q96LA8 375 aaPredicted RBP12.16□□□□□ -0.46
USP3-216ENST00000559873 PGAP2Q9UHJ9 254 aa12.16□□□□□ -0.46
USP3-216ENST00000559873 PPP2R3BQ9Y5P8 575 aa12.16□□□□□ -0.46
USP3-216ENST00000559873 MYH7P12883 1935 aa12.15□□□□□ -0.46
USP3-216ENST00000559873 CLRN2A0PK11 232 aa12.15□□□□□ -0.46
USP3-216ENST00000559873 RNF113AO15541 343 aaKnown RBP12.15□□□□□ -0.46
USP3-216ENST00000559873 RGS3P49796 1198 aa12.15□□□□□ -0.46
USP3-216ENST00000559873 FKBP1CQ5VVH2 108 aa12.15□□□□□ -0.46
USP3-216ENST00000559873 APOBEC3HQ6NTF7 200 aaKnown RBP12.15□□□□□ -0.46
USP3-216ENST00000559873 KRT26Q7Z3Y9 468 aa12.15□□□□□ -0.46
USP3-216ENST00000559873 APPBP2Q92624 585 aa12.15□□□□□ -0.46
USP3-216ENST00000559873 AIDAQ96BJ3 306 aa12.15□□□□□ -0.46
USP3-216ENST00000559873 TDRD3Q9H7E2 651 aaKnown RBP12.15□□□□□ -0.46
USP3-216ENST00000559873 USP40Q9NVE5 1235 aa12.15□□□□□ -0.46
USP3-216ENST00000559873 AATFQ9NY61 560 aaKnown RBP eCLIP12.15□□□□□ -0.46
USP3-216ENST00000559873 ZNF70Q9UC06 446 aaPredicted RBP12.15□□□□□ -0.46
USP3-216ENST00000559873 MAGEB6P1A0A0J9YX57 407 aa12.14□□□□□ -0.47
USP3-216ENST00000559873 POTEIP0CG38 1075 aa12.14□□□□□ -0.47
USP3-216ENST00000559873 POTEJP0CG39 1038 aa12.14□□□□□ -0.47
USP3-216ENST00000559873 PPP4CP60510 307 aa12.14□□□□□ -0.47
USP3-216ENST00000559873 CDC42EP5Q6NZY7 148 aa12.14□□□□□ -0.47
USP3-216ENST00000559873 TEX11Q8IYF3 940 aa12.14□□□□□ -0.47
USP3-216ENST00000559873 ZNF384Q8TF68 577 aa12.14□□□□□ -0.47
USP3-216ENST00000559873 DIAPH3Q9NSV4 1193 aa12.14□□□□□ -0.47
USP3-216ENST00000559873 PCDHAC2Q9Y5I4 1007 aa12.14□□□□□ -0.47
USP3-216ENST00000559873 RPAP1Q9BWH6 1393 aaPredicted RBP12.14□□□□□ -0.47
USP3-216ENST00000559873 ENTPD3O75355 529 aa12.13□□□□□ -0.47
USP3-216ENST00000559873 NF2P35240 595 aa12.13□□□□□ -0.47
USP3-216ENST00000559873 BMP2KLQ5H9B9 411 aa12.13□□□□□ -0.47
USP3-216ENST00000559873 MAP1SQ66K74 1059 aaPredicted RBP12.13□□□□□ -0.47
USP3-216ENST00000559873 ADGRA1Q86SQ6 560 aa12.13□□□□□ -0.47
USP3-216ENST00000559873 FAM83AQ86UY5 434 aa12.13□□□□□ -0.47
USP3-216ENST00000559873 MIGA1Q8NAN2 632 aa12.13□□□□□ -0.47
USP3-216ENST00000559873 HOOK2Q96ED9 719 aa12.13□□□□□ -0.47
USP3-216ENST00000559873 DDRGK1Q96HY6 314 aa12.13□□□□□ -0.47
USP3-216ENST00000559873 IDI2Q9BXS1 227 aa12.13□□□□□ -0.47
USP3-216ENST00000559873 CRNKL1Q9BZJ0 848 aaKnown RBP12.13□□□□□ -0.47
USP3-216ENST00000559873 AK9Q5TCS8 1911 aa12.12□□□□□ -0.47
USP3-216ENST00000559873 TCRBV5S4A2TA0A5A2 114 aa12.12□□□□□ -0.47
USP3-216ENST00000559873 TCP10L2B9ZVM9 353 aa12.12□□□□□ -0.47
USP3-216ENST00000559873 NPM3O75607 178 aaKnown RBP12.12□□□□□ -0.47
USP3-216ENST00000559873 GSPT1P15170 499 aaKnown RBP12.12□□□□□ -0.47
USP3-216ENST00000559873 MFAP1P55081 439 aaKnown RBP12.12□□□□□ -0.47
USP3-216ENST00000559873 GLIS2Q9BZE0 524 aaPredicted RBP12.12□□□□□ -0.47
USP3-216ENST00000559873 DEFB129Q9H1M3 183 aa12.12□□□□□ -0.47
USP3-216ENST00000559873 MYO5AQ9Y4I1 1855 aaKnown RBP12.12□□□□□ -0.47
USP3-216ENST00000559873 ASTN2O75129 1339 aaPredicted RBP12.11□□□□□ -0.47
USP3-216ENST00000559873 COL2A1P02458 1487 aaPredicted RBP12.11□□□□□ -0.47
USP3-216ENST00000559873 ADM5C9JUS6 153 aa12.11□□□□□ -0.47
USP3-216ENST00000559873 MBD4O95243 580 aa12.11□□□□□ -0.47
USP3-216ENST00000559873 GNAT2P19087 354 aa12.11□□□□□ -0.47
USP3-216ENST00000559873 SDSP20132 328 aa12.11□□□□□ -0.47
USP3-216ENST00000559873 USP5P45974 858 aa12.11□□□□□ -0.47
USP3-216ENST00000559873 RHBDL3P58872 404 aa12.11□□□□□ -0.47
USP3-216ENST00000559873 PICALMQ13492 652 aa12.11□□□□□ -0.47
USP3-216ENST00000559873 SUPT20HL1Q3ZLR7 823 aa12.11□□□□□ -0.47
USP3-216ENST00000559873 CASC1Q6TDU7 716 aa12.11□□□□□ -0.47
USP3-216ENST00000559873 USP48Q86UV5 1035 aa12.11□□□□□ -0.47
USP3-216ENST00000559873 AMOTL1Q8IY63 956 aa12.11□□□□□ -0.47
USP3-216ENST00000559873 SH3RF3Q8TEJ3 882 aaPredicted RBP12.11□□□□□ -0.47
USP3-216ENST00000559873 FAM151AQ8WW52 585 aa12.11□□□□□ -0.47
USP3-216ENST00000559873 RIOK1Q9BRS2 568 aaKnown RBP12.11□□□□□ -0.47
USP3-216ENST00000559873 HELLSQ9NRZ9 838 aa12.11□□□□□ -0.47
USP3-216ENST00000559873 GTF3C3Q9Y5Q9 886 aa12.11□□□□□ -0.47
USP3-216ENST00000559873 RAD50Q92878 1312 aa12.11□□□□□ -0.47
USP3-216ENST00000559873 WDHD1O75717 1129 aaPredicted RBP12.1□□□□□ -0.47
USP3-216ENST00000559873 CACNB3P54284 484 aa12.1□□□□□ -0.47
USP3-216ENST00000559873 DYNLL1P63167 89 aaKnown RBP12.1□□□□□ -0.47
USP3-216ENST00000559873 NFIAQ12857 509 aa12.1□□□□□ -0.47
USP3-216ENST00000559873 RASA3Q14644 834 aa12.1□□□□□ -0.47
USP3-216ENST00000559873 ZMYM1Q5SVZ6 1142 aa12.1□□□□□ -0.47
USP3-216ENST00000559873 LCORLQ8N3X6 602 aa12.1□□□□□ -0.47
USP3-216ENST00000559873 RUFY2Q8WXA3 655 aa12.1□□□□□ -0.47
USP3-216ENST00000559873 CDCA5Q96FF9 252 aa12.1□□□□□ -0.47
USP3-216ENST00000559873 FLT1P17948 1338 aa12.1□□□□□ -0.47
USP3-216ENST00000559873 PASKQ96RG2 1323 aa12.1□□□□□ -0.47
USP3-216ENST00000559873 GPAA1O43292 621 aa12.09□□□□□ -0.47
USP3-216ENST00000559873 HLA-DOAP06340 250 aa12.09□□□□□ -0.47
USP3-216ENST00000559873 MAPKAPK5Q8IW41 473 aa12.09□□□□□ -0.47
USP3-216ENST00000559873 ZSCAN29Q8IWY8 852 aaPredicted RBP12.09□□□□□ -0.47
USP3-216ENST00000559873 NACAP1Q9BZK3 213 aa12.09□□□□□ -0.47
USP3-216ENST00000559873 PUS7LQ9H0K6 701 aaKnown RBP12.09□□□□□ -0.47
USP3-216ENST00000559873 OSBPL5Q9H0X9 879 aaPredicted RBP12.09□□□□□ -0.47
USP3-216ENST00000559873 DHX36Q9H2U1 1008 aaKnown RBP12.09□□□□□ -0.47
USP3-216ENST00000559873 ARMT1Q9H993 441 aa12.09□□□□□ -0.47
USP3-216ENST00000559873 ATP8A2Q9NTI2 1148 aa12.09□□□□□ -0.47
USP3-216ENST00000559873 CNTNAP1P78357 1384 aa12.08□□□□□ -0.48
USP3-216ENST00000559873 ATRNL1Q5VV63 1379 aa12.08□□□□□ -0.48
USP3-216ENST00000559873 ITGBL1O95965 494 aaPredicted RBP12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms