RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 CLRN2A0PK11 232 aa26.25■■□□□ 1.79
SNX1-206ENST00000559389 TTC22Q5TAA0 569 aa26.25■■□□□ 1.79
SNX1-206ENST00000559389 EVI5LQ96CN4 794 aa26.25■■□□□ 1.79
SNX1-206ENST00000559389 ZNF70Q9UC06 446 aaPredicted RBP26.25■■□□□ 1.79
SNX1-206ENST00000559389 AK9Q5TCS8 1911 aa26.25■■□□□ 1.79
SNX1-206ENST00000559389 ZNF532Q9HCE3 1301 aa26.24■■□□□ 1.79
SNX1-206ENST00000559389 CDC42EP5Q6NZY7 148 aa26.24■■□□□ 1.79
SNX1-206ENST00000559389 APOBEC3FQ8IUX4 373 aaKnown RBP26.24■■□□□ 1.79
SNX1-206ENST00000559389 DCPSQ96C86 337 aaKnown RBP26.24■■□□□ 1.79
SNX1-206ENST00000559389 FSD1Q9BTV5 496 aa26.24■■□□□ 1.79
SNX1-206ENST00000559389 GSPT1P15170 499 aaKnown RBP26.23■■□□□ 1.79
SNX1-206ENST00000559389 ZSCAN25Q6NSZ9 544 aa26.23■■□□□ 1.79
SNX1-206ENST00000559389 CHGBP05060 677 aa26.22■■□□□ 1.79
SNX1-206ENST00000559389 RHBDL3P58872 404 aa26.22■■□□□ 1.79
SNX1-206ENST00000559389 FSTL1Q12841 308 aa26.22■■□□□ 1.79
SNX1-206ENST00000559389 UBE3CQ15386 1083 aa26.22■■□□□ 1.79
SNX1-206ENST00000559389 CNTROBQ8N137 903 aa26.22■■□□□ 1.79
SNX1-206ENST00000559389 VEZTQ9HBM0 779 aa26.22■■□□□ 1.79
SNX1-206ENST00000559389 TMOD2Q9NZR1 351 aa26.22■■□□□ 1.79
SNX1-206ENST00000559389 FOCADQ5VW36 1801 aa26.21■■□□□ 1.79
SNX1-206ENST00000559389 ZFYP08048 801 aaPredicted RBP26.21■■□□□ 1.79
SNX1-206ENST00000559389 PPP4CP60510 307 aa26.21■■□□□ 1.79
SNX1-206ENST00000559389 KRT26Q7Z3Y9 468 aa26.21■■□□□ 1.79
SNX1-206ENST00000559389 SULF1Q8IWU6 871 aa26.21■■□□□ 1.79
SNX1-206ENST00000559389 NOL10Q9BSC4 688 aaKnown RBP26.21■■□□□ 1.79
SNX1-206ENST00000559389 GLIS2Q9BZE0 524 aaPredicted RBP26.21■■□□□ 1.79
SNX1-206ENST00000559389 AATFQ9NY61 560 aaKnown RBP eCLIP26.21■■□□□ 1.79
SNX1-206ENST00000559389 CDK5RAP2Q96SN8 1893 aa26.21■■□□□ 1.79
SNX1-206ENST00000559389 TRIM6-TRIM34B2RNG4 842 aa26.2■■□□□ 1.78
SNX1-206ENST00000559389 ADM5C9JUS6 153 aa26.2■■□□□ 1.78
SNX1-206ENST00000559389 BAG3O95817 575 aa26.2■■□□□ 1.78
SNX1-206ENST00000559389 CACNB3P54284 484 aa26.2■■□□□ 1.78
SNX1-206ENST00000559389 LRRFIP1Q32MZ4 808 aaKnown RBP26.2■■□□□ 1.78
SNX1-206ENST00000559389 SLFNL1Q499Z3 407 aa26.2■■□□□ 1.78
SNX1-206ENST00000559389 FKBP1CQ5VVH2 108 aa26.2■■□□□ 1.78
SNX1-206ENST00000559389 CDC37L1Q7L3B6 337 aa26.2■■□□□ 1.78
SNX1-206ENST00000559389 USP40Q9NVE5 1235 aa26.2■■□□□ 1.78
SNX1-206ENST00000559389 POLR2AP24928 1970 aaKnown RBP26.19■■□□□ 1.78
SNX1-206ENST00000559389 ITGBL1O95965 494 aaPredicted RBP26.19■■□□□ 1.78
SNX1-206ENST00000559389 TNFAIP1Q13829 316 aa26.19■■□□□ 1.78
SNX1-206ENST00000559389 CERS3Q8IU89 383 aa26.19■■□□□ 1.78
SNX1-206ENST00000559389 MIGA1Q8NAN2 632 aa26.19■■□□□ 1.78
SNX1-206ENST00000559389 RIOK1Q9BRS2 568 aaKnown RBP26.19■■□□□ 1.78
SNX1-206ENST00000559389 SCAF8Q9UPN6 1271 aaKnown RBP26.19■■□□□ 1.78
SNX1-206ENST00000559389 CNTNAP1P78357 1384 aa26.19■■□□□ 1.78
SNX1-206ENST00000559389 RNF113AO15541 343 aaKnown RBP26.18■■□□□ 1.78
SNX1-206ENST00000559389 PLCG2P16885 1265 aa26.18■■□□□ 1.78
SNX1-206ENST00000559389 DYNLL1P63167 89 aaKnown RBP26.18■■□□□ 1.78
SNX1-206ENST00000559389 TICAM2Q86XR7 235 aa26.18■■□□□ 1.78
SNX1-206ENST00000559389 APPBP2Q92624 585 aa26.18■■□□□ 1.78
SNX1-206ENST00000559389 RILPL2Q969X0 211 aa26.18■■□□□ 1.78
SNX1-206ENST00000559389 WDHD1O75717 1129 aaPredicted RBP26.17■■□□□ 1.78
SNX1-206ENST00000559389 RGS3P49796 1198 aa26.17■■□□□ 1.78
SNX1-206ENST00000559389 NFIAQ12857 509 aa26.17■■□□□ 1.78
SNX1-206ENST00000559389 USP48Q86UV5 1035 aa26.17■■□□□ 1.78
SNX1-206ENST00000559389 SH3RF3Q8TEJ3 882 aaPredicted RBP26.17■■□□□ 1.78
SNX1-206ENST00000559389 IDI2Q9BXS1 227 aa26.17■■□□□ 1.78
SNX1-206ENST00000559389 PPP2R3BQ9Y5P8 575 aa26.17■■□□□ 1.78
SNX1-206ENST00000559389 RPAP1Q9BWH6 1393 aaPredicted RBP26.17■■□□□ 1.78
SNX1-206ENST00000559389 DDX60LQ5H9U9 1706 aaKnown RBP26.17■■□□□ 1.78
SNX1-206ENST00000559389 PASKQ96RG2 1323 aa26.16■■□□□ 1.78
SNX1-206ENST00000559389 MAGEB6P1A0A0J9YX57 407 aa26.16■■□□□ 1.78
SNX1-206ENST00000559389 TCP10L2B9ZVM9 353 aa26.16■■□□□ 1.78
SNX1-206ENST00000559389 TRAF5O00463 557 aa26.16■■□□□ 1.78
SNX1-206ENST00000559389 SDSP20132 328 aa26.16■■□□□ 1.78
SNX1-206ENST00000559389 FAM83AQ86UY5 434 aa26.16■■□□□ 1.78
SNX1-206ENST00000559389 DEFB129Q9H1M3 183 aa26.16■■□□□ 1.78
SNX1-206ENST00000559389 TNNI2P48788 182 aa26.15■■□□□ 1.78
SNX1-206ENST00000559389 TEX11Q8IYF3 940 aa26.15■■□□□ 1.78
SNX1-206ENST00000559389 FAM198AQ9UFP1 575 aa26.15■■□□□ 1.78
SNX1-206ENST00000559389 RASA3Q14644 834 aa26.14■■□□□ 1.78
SNX1-206ENST00000559389 ZMYM1Q5SVZ6 1142 aa26.14■■□□□ 1.78
SNX1-206ENST00000559389 LCORLQ8N3X6 602 aa26.14■■□□□ 1.78
SNX1-206ENST00000559389 OSBP2Q969R2 916 aa26.14■■□□□ 1.78
SNX1-206ENST00000559389 CDCA5Q96FF9 252 aa26.14■■□□□ 1.78
SNX1-206ENST00000559389 PUS7LQ9H0K6 701 aaKnown RBP26.14■■□□□ 1.78
SNX1-206ENST00000559389 DDX4Q9NQI0 724 aaKnown RBP26.14■■□□□ 1.78
SNX1-206ENST00000559389 COL2A1P02458 1487 aaPredicted RBP26.14■■□□□ 1.78
SNX1-206ENST00000559389 TRPM7Q96QT4 1865 aa26.14■■□□□ 1.78
SNX1-206ENST00000559389 NAV1Q8NEY1 1877 aa26.13■■□□□ 1.77
SNX1-206ENST00000559389 SSC5DA1L4H1 1573 aa26.13■■□□□ 1.77
SNX1-206ENST00000559389 NPM3O75607 178 aaKnown RBP26.13■■□□□ 1.77
SNX1-206ENST00000559389 MBD4O95243 580 aa26.13■■□□□ 1.77
SNX1-206ENST00000559389 DLK2Q6UY11 383 aa26.13■■□□□ 1.77
SNX1-206ENST00000559389 ENTPD3O75355 529 aa26.12■■□□□ 1.77
SNX1-206ENST00000559389 FMR1Q06787 632 aaKnown RBP eCLIP26.12■■□□□ 1.77
SNX1-206ENST00000559389 BMP2KLQ5H9B9 411 aa26.12■■□□□ 1.77
SNX1-206ENST00000559389 ARMT1Q9H993 441 aa26.12■■□□□ 1.77
SNX1-206ENST00000559389 M0R2C6 588 aa26.11■■□□□ 1.77
SNX1-206ENST00000559389 PICALMQ13492 652 aa26.11■■□□□ 1.77
SNX1-206ENST00000559389 FAM151AQ8WW52 585 aa26.11■■□□□ 1.77
SNX1-206ENST00000559389 AIDAQ96BJ3 306 aa26.11■■□□□ 1.77
SNX1-206ENST00000559389 TEPSINQ96N21 525 aa26.11■■□□□ 1.77
SNX1-206ENST00000559389 TMEM39BQ9GZU3 492 aa26.11■■□□□ 1.77
SNX1-206ENST00000559389 FLT1P17948 1338 aa26.11■■□□□ 1.77
SNX1-206ENST00000559389 ATRNL1Q5VV63 1379 aa26.1■■□□□ 1.77
SNX1-206ENST00000559389 TCP10Q12799 353 aa26.1■■□□□ 1.77
SNX1-206ENST00000559389 CRNKL1Q9BZJ0 848 aaKnown RBP26.1■■□□□ 1.77
SNX1-206ENST00000559389 A0A0D9SFI3 127 aa26.09■■□□□ 1.77
SNX1-206ENST00000559389 PRAMEF18Q5VWM3 479 aa26.09■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms