RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 TBC1D22AQ8WUA7 517 aa10.6□□□□□ -0.71
USP28-215ENST00000545608 PTPN18Q99952 460 aa10.6□□□□□ -0.71
USP28-215ENST00000545608 ELP3Q9H9T3 547 aa10.6□□□□□ -0.71
USP28-215ENST00000545608 SMC4Q9NTJ3 1288 aa10.6□□□□□ -0.71
USP28-215ENST00000545608 TESPA1A2RU30 521 aaPredicted RBP10.59□□□□□ -0.71
USP28-215ENST00000545608 TULP1O00294 542 aaPredicted RBP10.59□□□□□ -0.71
USP28-215ENST00000545608 TNNI2P48788 182 aa10.59□□□□□ -0.71
USP28-215ENST00000545608 MAP3K9P80192 1104 aa10.59□□□□□ -0.71
USP28-215ENST00000545608 APOBEC3HQ6NTF7 200 aaKnown RBP10.59□□□□□ -0.71
USP28-215ENST00000545608 FBXO46Q6PJ61 603 aaPredicted RBP10.59□□□□□ -0.71
USP28-215ENST00000545608 ATG9AQ7Z3C6 839 aa10.59□□□□□ -0.71
USP28-215ENST00000545608 TEKT1Q969V4 418 aa10.59□□□□□ -0.71
USP28-215ENST00000545608 OPTNQ96CV9 577 aa10.59□□□□□ -0.71
USP28-215ENST00000545608 MS4A4AQ96JQ5 239 aa10.59□□□□□ -0.71
USP28-215ENST00000545608 MRIQ9BWK5 157 aa10.59□□□□□ -0.71
USP28-215ENST00000545608 NOB1Q9ULX3 412 aaKnown RBP10.59□□□□□ -0.71
USP28-215ENST00000545608 CRHR2Q13324 411 aa10.58□□□□□ -0.72
USP28-215ENST00000545608 FBXO22Q8NEZ5 403 aa10.58□□□□□ -0.72
USP28-215ENST00000545608 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.58□□□□□ -0.72
USP28-215ENST00000545608 LPIN2Q92539 896 aa10.58□□□□□ -0.72
USP28-215ENST00000545608 ZDHHC15Q96MV8 337 aa10.58□□□□□ -0.72
USP28-215ENST00000545608 SUGT1Q9Y2Z0 365 aa10.58□□□□□ -0.72
USP28-215ENST00000545608 TRIM17Q9Y577 477 aa10.58□□□□□ -0.72
USP28-215ENST00000545608 KIF16BQ96L93 1317 aa10.58□□□□□ -0.72
USP28-215ENST00000545608 UBTFL1P0CB47 393 aaPredicted RBP10.57□□□□□ -0.72
USP28-215ENST00000545608 SLC5A1P13866 664 aa10.57□□□□□ -0.72
USP28-215ENST00000545608 VGLL4Q14135 290 aa10.57□□□□□ -0.72
USP28-215ENST00000545608 OTUD7BQ6GQQ9 843 aa10.57□□□□□ -0.72
USP28-215ENST00000545608 HHIPL2Q6UWX4 724 aa10.57□□□□□ -0.72
USP28-215ENST00000545608 OTOP1Q7RTM1 612 aa10.57□□□□□ -0.72
USP28-215ENST00000545608 BRI3BPQ8WY22 251 aa10.57□□□□□ -0.72
USP28-215ENST00000545608 SIL1Q9H173 461 aa10.57□□□□□ -0.72
USP28-215ENST00000545608 ECM29Q5VYK3 1845 aa10.56□□□□□ -0.72
USP28-215ENST00000545608 PPP1R37O75864 691 aa10.56□□□□□ -0.72
USP28-215ENST00000545608 CIAO1O76071 339 aa10.56□□□□□ -0.72
USP28-215ENST00000545608 CT47B1P0C2W7 299 aaPredicted RBP10.56□□□□□ -0.72
USP28-215ENST00000545608 CAP1Q01518 475 aa10.56□□□□□ -0.72
USP28-215ENST00000545608 FAM83AQ86UY5 434 aa10.56□□□□□ -0.72
USP28-215ENST00000545608 WDR66Q8TBY9 1149 aa10.56□□□□□ -0.72
USP28-215ENST00000545608 CD99L2Q8TCZ2 262 aa10.56□□□□□ -0.72
USP28-215ENST00000545608 API5Q9BZZ5 524 aaKnown RBP10.56□□□□□ -0.72
USP28-215ENST00000545608 TMOD2Q9NZR1 351 aa10.56□□□□□ -0.72
USP28-215ENST00000545608 CEP126Q9P2H0 1117 aa10.56□□□□□ -0.72
USP28-215ENST00000545608 PA2G4Q9UQ80 394 aaKnown RBP10.56□□□□□ -0.72
USP28-215ENST00000545608 LRRFIP2Q9Y608 721 aaKnown RBP10.56□□□□□ -0.72
USP28-215ENST00000545608 MAST3O60307 1309 aa10.56□□□□□ -0.72
USP28-215ENST00000545608 CCL15-CCL14A0A0B4J2E2 113 aa10.55□□□□□ -0.72
USP28-215ENST00000545608 GTF2A2P52657 109 aa10.55□□□□□ -0.72
USP28-215ENST00000545608 RARSP54136 660 aaKnown RBP10.55□□□□□ -0.72
USP28-215ENST00000545608 DIXDC1Q155Q3 683 aa10.55□□□□□ -0.72
USP28-215ENST00000545608 CCL15Q16663 113 aa10.55□□□□□ -0.72
USP28-215ENST00000545608 ATP2B3Q16720 1220 aa10.55□□□□□ -0.72
USP28-215ENST00000545608 FKBP1CQ5VVH2 108 aa10.55□□□□□ -0.72
USP28-215ENST00000545608 FAM43AQ8N2R8 423 aa10.55□□□□□ -0.72
USP28-215ENST00000545608 OTUD5Q96G74 571 aa10.55□□□□□ -0.72
USP28-215ENST00000545608 ERO1AQ96HE7 468 aa10.55□□□□□ -0.72
USP28-215ENST00000545608 MEIS3Q99687 375 aa10.55□□□□□ -0.72
USP28-215ENST00000545608 CSADQ9Y600 493 aa10.55□□□□□ -0.72
USP28-215ENST00000545608 SNCAIPQ9Y6H5 919 aa10.55□□□□□ -0.72
USP28-215ENST00000545608 SPDYE5A6NIY4 337 aa10.54□□□□□ -0.72
USP28-215ENST00000545608 SLC34A2O95436 690 aa10.54□□□□□ -0.72
USP28-215ENST00000545608 CD44P16070 742 aaKnown RBP10.54□□□□□ -0.72
USP28-215ENST00000545608 PRDX5P30044 214 aa10.54□□□□□ -0.72
USP28-215ENST00000545608 IL15P40933 162 aaPredicted RBP10.54□□□□□ -0.72
USP28-215ENST00000545608 PHKA1P46020 1223 aa10.54□□□□□ -0.72
USP28-215ENST00000545608 SP3Q02447 781 aa10.54□□□□□ -0.72
USP28-215ENST00000545608 CDC42EP5Q6NZY7 148 aa10.54□□□□□ -0.72
USP28-215ENST00000545608 MIGA2Q7L4E1 593 aa10.54□□□□□ -0.72
USP28-215ENST00000545608 ZKSCAN4Q969J2 545 aaPredicted RBP10.54□□□□□ -0.72
USP28-215ENST00000545608 WRNIP1Q96S55 665 aa10.54□□□□□ -0.72
USP28-215ENST00000545608 COPRSQ9NQ92 184 aa10.54□□□□□ -0.72
USP28-215ENST00000545608 PTPN22Q9Y2R2 807 aa10.54□□□□□ -0.72
USP28-215ENST00000545608 DAGLAQ9Y4D2 1042 aa10.54□□□□□ -0.72
USP28-215ENST00000545608 CCER2I3L3R5 266 aa10.53□□□□□ -0.72
USP28-215ENST00000545608 ADORA1P30542 326 aa10.53□□□□□ -0.72
USP28-215ENST00000545608 INPP5BP32019 993 aa10.53□□□□□ -0.72
USP28-215ENST00000545608 TCP10Q12799 353 aa10.53□□□□□ -0.72
USP28-215ENST00000545608 NFIAQ12857 509 aa10.53□□□□□ -0.72
USP28-215ENST00000545608 TAF1CQ15572 869 aaPredicted RBP10.53□□□□□ -0.72
USP28-215ENST00000545608 E2F4Q16254 413 aa10.53□□□□□ -0.72
USP28-215ENST00000545608 ERO1BQ86YB8 467 aa10.53□□□□□ -0.72
USP28-215ENST00000545608 FAM151AQ8WW52 585 aa10.53□□□□□ -0.72
USP28-215ENST00000545608 EFCC1Q9HA90 598 aa10.53□□□□□ -0.72
USP28-215ENST00000545608 ZFYVE28Q9HCC9 887 aa10.53□□□□□ -0.72
USP28-215ENST00000545608 GNL3LQ9NVN8 582 aaKnown RBP10.53□□□□□ -0.72
USP28-215ENST00000545608 ARAP2Q8WZ64 1704 aa10.53□□□□□ -0.72
USP28-215ENST00000545608 POTEFA5A3E0 1075 aa10.52□□□□□ -0.73
USP28-215ENST00000545608 IRF6O14896 467 aa10.52□□□□□ -0.73
USP28-215ENST00000545608 LDHBP07195 334 aaKnown RBP10.52□□□□□ -0.73
USP28-215ENST00000545608 TIMM10P62072 90 aa10.52□□□□□ -0.73
USP28-215ENST00000545608 DCAF15Q66K64 600 aa10.52□□□□□ -0.73
USP28-215ENST00000545608 CCDC102BQ68D86 513 aa10.52□□□□□ -0.73
USP28-215ENST00000545608 INTS3Q68E01 1043 aaKnown RBP10.52□□□□□ -0.73
USP28-215ENST00000545608 ZFPM1Q8IX07 1006 aa10.52□□□□□ -0.73
USP28-215ENST00000545608 ARHGAP45Q92619 1136 aa10.52□□□□□ -0.73
USP28-215ENST00000545608 HOOK2Q96ED9 719 aa10.52□□□□□ -0.73
USP28-215ENST00000545608 ZNF341Q9BYN7 854 aa10.52□□□□□ -0.73
USP28-215ENST00000545608 USP40Q9NVE5 1235 aa10.52□□□□□ -0.73
USP28-215ENST00000545608 FAM198AQ9UFP1 575 aa10.52□□□□□ -0.73
USP28-215ENST00000545608 DENND2AQ9ULE3 1009 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms